Wall clock time and date at job start Tue Mar 31 2020 11:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47152 * 274.98232 * 3 2 1 5 5 H 1.48495 * 109.47093 * 34.98383 * 3 2 1 6 6 H 1.48502 * 109.47196 * 154.98494 * 3 2 1 7 7 C 1.39946 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99262 * 160.81562 * 7 2 1 9 9 C 1.41393 * 120.00315 * 340.81145 * 7 2 1 10 10 C 1.40715 * 120.24362 * 154.97682 * 9 7 2 11 11 C 1.37613 * 119.74417 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24945 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74891 * 179.69981 * 12 11 10 14 14 N 1.46904 * 109.46892 * 90.00265 * 13 12 11 15 15 C 1.46849 * 110.99933 * 66.04458 * 14 13 12 16 16 C 1.53030 * 109.52468 * 174.15885 * 15 14 13 17 17 C 1.53124 * 109.27668 * 59.18096 * 16 15 14 18 18 C 1.53121 * 109.16141 * 302.34368 * 17 16 15 19 19 H 1.08995 * 109.50504 * 297.71745 * 18 17 16 20 20 N 1.46900 * 109.50211 * 177.63418 * 18 17 16 21 21 C 1.48532 * 110.99835 * 59.02768 * 20 18 17 22 22 C 1.54944 * 103.22264 * 159.71707 * 21 20 18 23 23 C 1.54593 * 102.92405 * 322.58873 * 22 21 20 24 24 C 1.47904 * 110.99667 * 176.42690 * 20 18 17 25 25 C 1.46843 * 111.00192 * 301.83583 * 14 13 12 26 26 C 1.38634 * 120.50059 * 359.97438 * 12 11 10 27 27 C 1.37618 * 120.24887 * 0.02562 * 26 12 11 28 28 H 0.96999 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.12668 * 0.04443 * 10 9 7 30 30 H 1.08004 * 119.87632 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47350 * 210.00283 * 13 12 11 32 32 H 1.09003 * 109.47310 * 330.00395 * 13 12 11 33 33 H 1.09001 * 109.46287 * 294.17985 * 15 14 13 34 34 H 1.09008 * 109.45892 * 54.14347 * 15 14 13 35 35 H 1.09000 * 109.51036 * 179.12218 * 16 15 14 36 36 H 1.09001 * 109.50620 * 299.20235 * 16 15 14 37 37 H 1.08995 * 109.52499 * 62.25107 * 17 16 15 38 38 H 1.08997 * 109.52357 * 182.44139 * 17 16 15 39 39 H 1.08992 * 110.67161 * 278.14998 * 21 20 18 40 40 H 1.08999 * 110.66741 * 41.28657 * 21 20 18 41 41 H 1.09005 * 110.72335 * 204.22620 * 22 21 20 42 42 H 1.08998 * 110.87389 * 81.01572 * 22 21 20 43 43 H 1.09008 * 110.30568 * 263.03889 * 23 22 21 44 44 H 1.08999 * 110.39260 * 140.91981 * 23 22 21 45 45 H 1.08996 * 109.91636 * 333.50575 * 24 20 18 46 46 H 1.08994 * 109.91869 * 94.80149 * 24 20 18 47 47 H 1.09000 * 109.46362 * 305.85818 * 25 14 13 48 48 H 1.09003 * 109.46321 * 65.82356 * 25 14 13 49 49 H 1.07997 * 119.87674 * 179.97438 * 26 12 11 50 50 H 1.07991 * 120.12930 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3844 2.1073 -1.3948 5 1 1.4963 2.6199 0.8027 6 1 3.5885 1.4121 0.5920 7 6 2.0079 -1.2120 -0.0005 8 1 3.0430 -1.2377 -0.3079 9 6 1.3599 -2.4027 0.4014 10 6 1.8161 -3.6498 -0.0641 11 6 1.1774 -4.8021 0.3332 12 6 0.0881 -4.7375 1.1883 13 6 -0.6071 -6.0061 1.6108 14 7 0.0160 -6.5207 2.8376 15 6 -0.2085 -5.6070 3.9651 16 6 0.3255 -6.2411 5.2514 17 6 1.8214 -6.5261 5.0913 18 6 2.0321 -7.4406 3.8814 19 1 1.5294 -8.3924 4.0527 20 7 3.4695 -7.6732 3.6868 21 6 4.0754 -8.2975 4.8907 22 6 5.3782 -8.9326 4.3429 23 6 4.9518 -9.4493 2.9497 24 6 3.7075 -8.6220 2.5774 25 6 1.4486 -6.7717 2.6348 26 6 -0.3700 -3.5144 1.6531 27 6 0.2533 -2.3492 1.2689 28 1 -0.4851 0.8400 0.0004 29 1 2.6645 -3.7023 -0.7304 30 1 1.5261 -5.7605 -0.0224 31 1 -1.6606 -5.7980 1.7981 32 1 -0.5189 -6.7499 0.8189 33 1 0.3119 -4.6672 3.7802 34 1 -1.2765 -5.4159 4.0705 35 1 0.1728 -5.5562 6.0855 36 1 -0.2045 -7.1737 5.4447 37 1 2.3564 -5.5890 4.9371 38 1 2.1968 -7.0174 5.9889 39 1 4.3024 -7.5421 5.6429 40 1 3.4165 -9.0635 5.2997 41 1 5.7019 -9.7574 4.9778 42 1 6.1664 -8.1852 4.2524 43 1 4.7006 -10.5089 2.9998 44 1 5.7475 -9.2837 2.2233 45 1 2.8460 -9.2794 2.4599 46 1 3.8888 -8.0742 1.6528 47 1 1.5842 -7.4266 1.7740 48 1 1.9612 -5.8265 2.4562 49 1 -1.2197 -3.4758 2.3186 50 1 -0.1054 -1.3974 1.6319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342764881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:18 Heat of formation + Delta-G solvation = 1.028289 kcal Electronic energy + Delta-G solvation = -26947.956439 eV Core-core repulsion = 23551.944544 eV Total energy + Delta-G solvation = -3396.011895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.98278 -39.70070 -38.34831 -35.87079 -34.53625 -32.90540 -31.71896 -31.12508 -29.89609 -29.23594 -28.27737 -26.01277 -24.10293 -23.69680 -22.77261 -22.02296 -21.46492 -21.32256 -20.46019 -19.23955 -17.46121 -17.16450 -16.88205 -16.36851 -16.17662 -15.92195 -15.65262 -15.31782 -15.16245 -14.92721 -14.67546 -14.29892 -14.16130 -13.90778 -13.82412 -13.59300 -13.34744 -13.19299 -12.98091 -12.76433 -12.72414 -12.48924 -12.30575 -12.26428 -12.19851 -12.05241 -11.93481 -11.74635 -11.56379 -11.43518 -11.34947 -11.27953 -11.15409 -10.98106 -9.37752 -9.35841 -9.26926 -9.14086 -8.67101 -6.35564 0.92864 1.12122 1.34725 1.45246 1.51393 2.18183 2.65062 2.84935 3.34528 3.68760 3.73375 3.76426 3.96997 4.01166 4.07189 4.15381 4.24473 4.34324 4.38029 4.39066 4.48420 4.53145 4.61415 4.63771 4.65125 4.72227 4.80887 4.91505 4.93999 4.96832 4.99543 4.99896 5.03762 5.07433 5.08830 5.11146 5.13710 5.18304 5.23137 5.33183 5.34910 5.44274 5.45481 5.67663 5.92347 5.98595 6.04547 6.07803 6.17328 6.20612 6.36066 6.37555 6.67987 6.91884 7.01605 8.30088 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.003458 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.244449 B = 8095.107068 C = 8799.723079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.084 3.916 10 C -0.246 4.246 11 C -0.074 4.074 12 C -0.232 4.232 13 C 0.118 3.882 14 N -0.522 5.522 15 C 0.051 3.949 16 C -0.106 4.106 17 C -0.108 4.108 18 C 0.092 3.908 19 H 0.050 0.950 20 N -0.534 5.534 21 C 0.036 3.964 22 C -0.120 4.120 23 C -0.127 4.127 24 C 0.033 3.967 25 C 0.074 3.926 26 C -0.088 4.088 27 C -0.191 4.191 28 H 0.288 0.712 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.020 0.980 49 H 0.102 0.898 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 -15.581 10.301 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.081 3.919 10 C -0.266 4.266 11 C -0.092 4.092 12 C -0.235 4.235 13 C -0.009 4.009 14 N -0.245 5.245 15 C -0.078 4.078 16 C -0.144 4.144 17 C -0.146 4.146 18 C -0.017 4.017 19 H 0.067 0.933 20 N -0.259 5.259 21 C -0.091 4.091 22 C -0.158 4.158 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.055 4.055 26 C -0.106 4.106 27 C -0.211 4.211 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.034 0.966 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.038 0.962 49 H 0.120 0.880 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.718 -15.397 10.293 18.890 hybrid contribution 0.246 1.293 -0.632 1.460 sum 3.964 -14.104 9.661 17.549 Atomic orbital electron populations 1.69880 1.08998 1.30575 1.35491 1.26726 0.95452 1.04413 0.91134 0.85252 0.79219 0.76119 0.79495 1.18553 1.18785 1.18467 1.19816 0.98775 0.92988 1.41987 0.91099 1.17915 0.91734 0.92889 0.89319 1.21141 1.04840 0.93460 1.07141 1.20603 0.95511 0.96277 0.96853 1.20053 1.01588 0.95420 1.06407 1.20872 0.97189 0.91541 0.91312 1.62471 1.12620 1.44655 1.04757 1.22125 1.00699 0.93695 0.91240 1.21536 0.94985 1.01675 0.96253 1.21593 0.96710 0.99024 0.97299 1.21678 0.87334 0.97708 0.94962 0.93261 1.64696 1.12811 1.43173 1.05221 1.23251 0.95630 0.97398 0.92844 1.22477 0.96735 1.00522 0.96025 1.22395 0.96867 0.99531 0.97699 1.22854 0.98008 0.93505 0.95082 1.21870 0.87888 0.98635 0.97066 1.20723 0.98431 0.92488 0.99006 1.21189 1.00793 0.96988 1.02087 0.90111 0.89237 0.87569 0.90368 0.90539 0.96622 0.90524 0.90213 0.90320 0.93652 0.90291 0.90165 0.93093 0.89162 0.91365 0.90218 0.90771 0.93661 0.91920 0.91868 0.96168 0.87971 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.25 11.08 21.83 0.24 -44.01 16 2 C 0.04 1.97 5.10 85.26 0.44 2.41 16 3 Si 0.98 39.36 29.60 68.60 2.03 41.39 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.51 -28.52 9.04 23.46 0.21 -28.31 16 8 H 0.07 3.90 7.92 -2.91 -0.02 3.87 16 9 C 0.08 4.71 5.56 -21.29 -0.12 4.59 16 10 C -0.25 -12.67 9.80 22.73 0.22 -12.45 16 11 C -0.07 -3.30 7.98 22.22 0.18 -3.12 16 12 C -0.23 -9.77 4.06 -19.67 -0.08 -9.85 16 13 C 0.12 3.95 5.55 85.56 0.47 4.43 16 14 N -0.52 -16.08 4.86 -900.92 -4.38 -20.46 16 15 C 0.05 1.51 4.82 86.32 0.42 1.93 16 16 C -0.11 -2.52 6.09 30.65 0.19 -2.33 16 17 C -0.11 -2.70 5.05 30.68 0.15 -2.54 16 18 C 0.09 2.41 1.79 44.97 0.08 2.49 16 19 H 0.05 1.25 7.98 -2.39 -0.02 1.23 16 20 N -0.53 -13.41 5.11 -857.56 -4.38 -17.79 16 21 C 0.04 0.70 5.38 86.65 0.47 1.16 16 22 C -0.12 -1.93 7.06 31.80 0.22 -1.70 16 23 C -0.13 -2.14 6.93 31.47 0.22 -1.93 16 24 C 0.03 0.75 5.52 86.45 0.48 1.23 16 25 C 0.07 2.33 3.75 86.33 0.32 2.66 16 26 C -0.09 -4.07 8.09 22.22 0.18 -3.89 16 27 C -0.19 -10.33 8.70 22.73 0.20 -10.13 16 28 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 29 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.11 4.20 8.01 -2.91 -0.02 4.18 16 31 H 0.08 2.46 8.00 -2.39 -0.02 2.44 16 32 H 0.08 2.40 8.08 -2.39 -0.02 2.38 16 33 H 0.02 0.57 6.56 -2.39 -0.02 0.56 16 34 H 0.08 2.13 8.06 -2.38 -0.02 2.11 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.62 7.06 -2.39 -0.02 1.60 16 39 H 0.08 1.54 7.71 -2.39 -0.02 1.52 16 40 H 0.05 0.89 8.01 -2.39 -0.02 0.87 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.05 0.99 7.64 -2.39 -0.02 0.97 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 1.97 7.30 -2.39 -0.02 1.95 16 48 H 0.02 0.80 6.46 -2.39 -0.02 0.78 16 49 H 0.10 4.27 8.03 -2.91 -0.02 4.25 16 50 H 0.09 5.37 6.25 -2.92 -0.02 5.35 16 Total: -1.00 -60.82 376.81 -1.35 -62.17 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.89 Total: 34.06 kcal Atomic # 6 Polarization: -59.61 SS G_CDS: 4.25 Total: -55.36 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -8.52 Total: -82.26 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -60.82 -1.35 -62.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342764881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.200 kcal (2) G-P(sol) polarization free energy of solvation -60.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds