Wall clock time and date at job start Tue Mar 31 2020 11:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86793 * 120.00465 * 2 1 4 4 H 1.48504 * 109.47123 * 270.00290 * 3 2 1 5 5 H 1.48504 * 109.46771 * 29.99741 * 3 2 1 6 6 H 1.48495 * 109.47393 * 150.00153 * 3 2 1 7 7 C 1.39946 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99755 * 162.28879 * 7 2 1 9 9 C 1.41395 * 120.00621 * 342.55986 * 7 2 1 10 10 C 1.40707 * 120.24713 * 155.03785 * 9 7 2 11 11 C 1.37627 * 119.74628 * 179.70072 * 10 9 7 12 12 C 1.38638 * 120.24394 * 0.57711 * 11 10 9 13 13 C 1.50693 * 119.74704 * 179.69255 * 12 11 10 14 14 N 1.46898 * 109.47688 * 270.02430 * 13 12 11 15 15 C 1.47845 * 110.99842 * 290.84444 * 14 13 12 16 16 C 1.54906 * 104.79754 * 213.63256 * 15 14 13 17 17 C 1.55139 * 101.64861 * 37.07162 * 16 15 14 18 18 H 1.08998 * 110.86069 * 82.79975 * 17 16 15 19 19 N 1.46905 * 110.70401 * 205.96418 * 17 16 15 20 20 C 1.46851 * 110.99855 * 52.80762 * 19 17 16 21 21 C 1.53042 * 109.52081 * 174.16205 * 20 19 17 22 22 C 1.53122 * 109.27938 * 59.18214 * 21 20 19 23 23 C 1.53128 * 109.15637 * 302.34611 * 22 21 20 24 24 C 1.46845 * 110.99705 * 288.59983 * 19 17 16 25 25 C 1.47442 * 111.00405 * 170.00138 * 14 13 12 26 26 C 1.38633 * 120.49943 * 359.71917 * 12 11 10 27 27 C 1.37616 * 120.25061 * 359.97438 * 26 12 11 28 28 H 0.97002 * 119.99788 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.12688 * 359.97153 * 10 9 7 30 30 H 1.07993 * 119.87846 * 180.27171 * 11 10 9 31 31 H 1.09001 * 109.47040 * 30.02377 * 13 12 11 32 32 H 1.09005 * 109.47292 * 150.01931 * 13 12 11 33 33 H 1.09002 * 110.37353 * 332.46445 * 15 14 13 34 34 H 1.09004 * 110.37466 * 94.79859 * 15 14 13 35 35 H 1.08998 * 110.99212 * 278.97756 * 16 15 14 36 36 H 1.09003 * 111.02213 * 155.17624 * 16 15 14 37 37 H 1.09004 * 109.45954 * 294.17516 * 20 19 17 38 38 H 1.08996 * 109.46070 * 54.14873 * 20 19 17 39 39 H 1.08995 * 109.50131 * 299.23740 * 21 20 19 40 40 H 1.09001 * 109.53014 * 179.14022 * 21 20 19 41 41 H 1.08996 * 109.52255 * 182.44266 * 22 21 20 42 42 H 1.08994 * 109.57603 * 62.27603 * 22 21 20 43 43 H 1.09001 * 109.49694 * 297.70637 * 23 22 21 44 44 H 1.09002 * 109.53189 * 177.61601 * 23 22 21 45 45 H 1.08997 * 109.46273 * 305.85181 * 24 19 17 46 46 H 1.08999 * 109.46365 * 65.83512 * 24 19 17 47 47 H 1.08996 * 109.88851 * 242.66340 * 25 14 13 48 48 H 1.09005 * 109.88621 * 3.69051 * 25 14 13 49 49 H 1.08003 * 119.87177 * 179.97438 * 26 12 11 50 50 H 1.08001 * 120.12717 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5399 1.4400 0.7000 7 6 2.0078 -1.2120 -0.0005 8 1 3.0495 -1.2342 -0.2851 9 6 1.3496 -2.4086 0.3659 10 6 1.8189 -3.6486 -0.1053 11 6 1.1740 -4.8074 0.2629 12 6 0.0589 -4.7550 1.0850 13 6 -0.6427 -6.0302 1.4755 14 7 -1.6863 -6.3371 0.4883 15 6 -2.7957 -5.3632 0.5701 16 6 -4.0655 -6.1799 0.2231 17 6 -3.7560 -7.5420 0.8980 18 1 -4.0061 -7.5154 1.9586 19 7 -4.4755 -8.6311 0.2238 20 6 -4.2163 -8.6174 -1.2216 21 6 -4.8607 -9.8456 -1.8683 22 6 -6.3682 -9.8254 -1.6010 23 6 -6.6101 -9.7910 -0.0893 24 6 -5.9150 -8.5644 0.5058 25 6 -2.2328 -7.6900 0.7002 26 6 -0.4158 -3.5384 1.5500 27 6 0.2169 -2.3676 1.1998 28 1 -0.4850 0.8401 0.0004 29 1 2.6845 -3.6912 -0.7498 30 1 1.5350 -5.7606 -0.0939 31 1 0.0787 -6.8467 1.5072 32 1 -1.0971 -5.9085 2.4588 33 1 -2.8700 -4.9565 1.5787 34 1 -2.6508 -4.5611 -0.1536 35 1 -4.1736 -6.2941 -0.8555 36 1 -4.9550 -5.7226 0.6563 37 1 -4.6400 -7.7128 -1.6579 38 1 -3.1409 -8.6362 -1.3979 39 1 -4.4276 -10.7506 -1.4422 40 1 -4.6814 -9.8277 -2.9433 41 1 -6.8250 -10.7208 -2.0227 42 1 -6.8088 -8.9407 -2.0605 43 1 -6.2046 -10.6952 0.3646 44 1 -7.6807 -9.7338 0.1072 45 1 -6.0734 -8.5448 1.5841 46 1 -6.3307 -7.6602 0.0612 47 1 -2.0307 -8.3122 -0.1716 48 1 -1.7829 -8.1369 1.5868 49 1 -1.2856 -3.5093 2.1896 50 1 -0.1544 -1.4209 1.5636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343503874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:49 Heat of formation + Delta-G solvation = 20.840910 kcal Electronic energy + Delta-G solvation = -26169.341660 eV Core-core repulsion = 22774.188904 eV Total energy + Delta-G solvation = -3395.152755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.06434 -38.11438 -37.01869 -34.17925 -33.27267 -31.13237 -30.91842 -29.56265 -29.07735 -28.01693 -26.13321 -24.14898 -23.37696 -23.20449 -21.39556 -20.70787 -20.30527 -19.70830 -19.22794 -17.25765 -16.71870 -15.85747 -15.25382 -14.94571 -14.83104 -14.59868 -14.29523 -14.05947 -13.96520 -13.66150 -13.49105 -13.31160 -12.90516 -12.63412 -12.51363 -12.14520 -12.11583 -11.91450 -11.61399 -11.48743 -11.33768 -11.26728 -11.10656 -10.98401 -10.88513 -10.83575 -10.69560 -10.50340 -10.39884 -10.37326 -10.26704 -9.51772 -9.33609 -9.09752 -8.34506 -7.87825 -7.39791 -7.23929 -6.73188 -4.31462 2.77079 3.07505 3.11052 3.13034 3.20623 3.70339 3.94773 4.37867 4.58551 4.59546 4.69241 4.72269 4.86048 4.92294 5.01744 5.14771 5.21844 5.30735 5.39664 5.44405 5.52696 5.58448 5.65972 5.69164 5.72777 5.74947 5.78208 5.84043 5.91146 5.93541 5.95559 6.06218 6.13320 6.18074 6.24662 6.29380 6.40686 6.44015 6.47867 6.96524 6.98574 7.02752 7.10583 7.28348 7.41058 7.44362 7.52045 7.66160 7.93259 8.09188 8.18766 8.34566 8.67847 8.93318 9.01993 10.21177 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.002459 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.324782 B =11382.570201 C =11683.624385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.070 4.070 12 C -0.205 4.205 13 C 0.116 3.884 14 N -0.521 5.521 15 C 0.056 3.944 16 C -0.166 4.166 17 C 0.066 3.934 18 H 0.085 0.915 19 N -0.526 5.526 20 C 0.047 3.953 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.116 4.116 24 C 0.055 3.945 25 C 0.046 3.954 26 C -0.093 4.093 27 C -0.166 4.166 28 H 0.279 0.721 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.033 0.967 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.067 -14.675 0.324 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.109 3.891 10 C -0.247 4.247 11 C -0.089 4.089 12 C -0.207 4.207 13 C -0.011 4.011 14 N -0.245 5.245 15 C -0.072 4.072 16 C -0.206 4.206 17 C -0.044 4.044 18 H 0.103 0.897 19 N -0.249 5.249 20 C -0.081 4.081 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.073 4.073 25 C -0.082 4.082 26 C -0.112 4.112 27 C -0.185 4.185 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.098 0.902 48 H 0.071 0.929 49 H 0.099 0.901 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.859 -14.952 0.021 19.084 hybrid contribution -0.407 1.643 0.417 1.743 sum -12.266 -13.309 0.438 18.105 Atomic orbital electron populations 1.69835 1.07557 1.29046 1.35526 1.25896 0.94704 1.01239 0.92309 0.86357 0.80679 0.80755 0.79185 1.19538 1.20154 1.18497 1.19578 0.98008 0.91279 1.40461 0.90570 1.17608 0.91092 0.92007 0.88389 1.20972 1.03969 0.92961 1.06843 1.20322 0.95361 0.96299 0.96922 1.18841 1.00512 0.92515 1.08815 1.20939 0.92565 0.96448 0.91119 1.63778 1.10377 1.00529 1.49819 1.22864 0.88229 0.95460 1.00598 1.23415 0.98432 0.96864 1.01870 1.22986 0.94916 0.88445 0.98039 0.89698 1.62035 1.08464 1.44383 1.10064 1.22231 1.01534 0.97020 0.87299 1.21592 0.95180 0.98765 0.99896 1.21582 0.96574 1.01580 0.96204 1.21580 0.99437 0.98679 0.95677 1.22048 0.87705 0.97124 1.00385 1.22916 0.91773 0.92323 1.01213 1.20500 0.98074 0.92864 0.99773 1.21266 0.99432 0.96579 1.01262 0.91004 0.89178 0.89561 0.91808 0.95788 0.93789 0.89991 0.90309 0.91495 0.94305 0.89775 0.91232 0.91645 0.92035 0.92385 0.91198 0.91820 0.91079 0.94835 0.90175 0.92863 0.90100 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.70 10.95 55.55 0.61 -20.09 16 2 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 3 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 9 C 0.11 3.01 5.57 -106.83 -0.60 2.41 16 10 C -0.23 -5.69 9.80 -38.87 -0.38 -6.07 16 11 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 12 C -0.21 -4.46 5.12 -104.33 -0.53 -4.99 16 13 C 0.12 2.07 4.71 -4.98 -0.02 2.04 16 14 N -0.52 -8.63 5.15 -232.69 -1.20 -9.82 16 15 C 0.06 0.91 5.60 -2.30 -0.01 0.89 16 16 C -0.17 -2.14 5.74 -24.59 -0.14 -2.28 16 17 C 0.07 0.79 3.02 -65.89 -0.20 0.59 16 18 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 19 N -0.53 -5.69 4.68 -224.51 -1.05 -6.74 16 20 C 0.05 0.49 4.63 -3.83 -0.02 0.47 16 21 C -0.12 -1.02 6.09 -26.65 -0.16 -1.19 16 22 C -0.12 -0.97 6.00 -26.60 -0.16 -1.13 16 23 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 24 C 0.06 0.52 5.24 -3.84 -0.02 0.50 16 25 C 0.05 0.62 6.37 -2.84 -0.02 0.61 16 26 C -0.09 -2.16 8.88 -39.66 -0.35 -2.51 16 27 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 28 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 29 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.06 1.08 7.97 -51.93 -0.41 0.66 16 32 H 0.02 0.41 7.79 -51.93 -0.40 0.01 16 33 H 0.04 0.72 6.97 -51.93 -0.36 0.36 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.08 1.04 5.66 -51.93 -0.29 0.75 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.44 6.19 -51.93 -0.32 0.12 16 38 H 0.08 0.97 5.89 -51.93 -0.31 0.66 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 46 H 0.03 0.33 7.71 -51.93 -0.40 -0.07 16 47 H 0.08 1.09 5.78 -51.93 -0.30 0.79 16 48 H 0.05 0.70 7.55 -51.93 -0.39 0.31 16 49 H 0.08 1.72 7.46 -52.48 -0.39 1.33 16 50 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -26.97 375.83 -13.46 -40.43 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.52 Total: 6.12 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -3.93 Total: -29.35 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -1.64 Total: -36.65 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.97 -13.46 -40.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343503874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.273 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds