Wall clock time and date at job start Tue Mar 31 2020 11:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86793 * 120.00465 * 2 1 4 4 H 1.48504 * 109.47123 * 270.00290 * 3 2 1 5 5 H 1.48504 * 109.46771 * 29.99741 * 3 2 1 6 6 H 1.48495 * 109.47393 * 150.00153 * 3 2 1 7 7 C 1.39946 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99755 * 162.28879 * 7 2 1 9 9 C 1.41395 * 120.00621 * 342.55986 * 7 2 1 10 10 C 1.40707 * 120.24713 * 155.03785 * 9 7 2 11 11 C 1.37627 * 119.74628 * 179.70072 * 10 9 7 12 12 C 1.38638 * 120.24394 * 0.57711 * 11 10 9 13 13 C 1.50693 * 119.74704 * 179.69255 * 12 11 10 14 14 N 1.46898 * 109.47688 * 270.02430 * 13 12 11 15 15 C 1.47845 * 110.99842 * 290.84444 * 14 13 12 16 16 C 1.54906 * 104.79754 * 213.63256 * 15 14 13 17 17 C 1.55139 * 101.64861 * 37.07162 * 16 15 14 18 18 H 1.08998 * 110.86069 * 82.79975 * 17 16 15 19 19 N 1.46905 * 110.70401 * 205.96418 * 17 16 15 20 20 C 1.46851 * 110.99855 * 52.80762 * 19 17 16 21 21 C 1.53042 * 109.52081 * 174.16205 * 20 19 17 22 22 C 1.53122 * 109.27938 * 59.18214 * 21 20 19 23 23 C 1.53128 * 109.15637 * 302.34611 * 22 21 20 24 24 C 1.46845 * 110.99705 * 288.59983 * 19 17 16 25 25 C 1.47442 * 111.00405 * 170.00138 * 14 13 12 26 26 C 1.38633 * 120.49943 * 359.71917 * 12 11 10 27 27 C 1.37616 * 120.25061 * 359.97438 * 26 12 11 28 28 H 0.97002 * 119.99788 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.12688 * 359.97153 * 10 9 7 30 30 H 1.07993 * 119.87846 * 180.27171 * 11 10 9 31 31 H 1.09001 * 109.47040 * 30.02377 * 13 12 11 32 32 H 1.09005 * 109.47292 * 150.01931 * 13 12 11 33 33 H 1.09002 * 110.37353 * 332.46445 * 15 14 13 34 34 H 1.09004 * 110.37466 * 94.79859 * 15 14 13 35 35 H 1.08998 * 110.99212 * 278.97756 * 16 15 14 36 36 H 1.09003 * 111.02213 * 155.17624 * 16 15 14 37 37 H 1.09004 * 109.45954 * 294.17516 * 20 19 17 38 38 H 1.08996 * 109.46070 * 54.14873 * 20 19 17 39 39 H 1.08995 * 109.50131 * 299.23740 * 21 20 19 40 40 H 1.09001 * 109.53014 * 179.14022 * 21 20 19 41 41 H 1.08996 * 109.52255 * 182.44266 * 22 21 20 42 42 H 1.08994 * 109.57603 * 62.27603 * 22 21 20 43 43 H 1.09001 * 109.49694 * 297.70637 * 23 22 21 44 44 H 1.09002 * 109.53189 * 177.61601 * 23 22 21 45 45 H 1.08997 * 109.46273 * 305.85181 * 24 19 17 46 46 H 1.08999 * 109.46365 * 65.83512 * 24 19 17 47 47 H 1.08996 * 109.88851 * 242.66340 * 25 14 13 48 48 H 1.09005 * 109.88621 * 3.69051 * 25 14 13 49 49 H 1.08003 * 119.87177 * 179.97438 * 26 12 11 50 50 H 1.08001 * 120.12717 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5399 1.4400 0.7000 7 6 2.0078 -1.2120 -0.0005 8 1 3.0495 -1.2342 -0.2851 9 6 1.3496 -2.4086 0.3659 10 6 1.8189 -3.6486 -0.1053 11 6 1.1740 -4.8074 0.2629 12 6 0.0589 -4.7550 1.0850 13 6 -0.6427 -6.0302 1.4755 14 7 -1.6863 -6.3371 0.4883 15 6 -2.7957 -5.3632 0.5701 16 6 -4.0655 -6.1799 0.2231 17 6 -3.7560 -7.5420 0.8980 18 1 -4.0061 -7.5154 1.9586 19 7 -4.4755 -8.6311 0.2238 20 6 -4.2163 -8.6174 -1.2216 21 6 -4.8607 -9.8456 -1.8683 22 6 -6.3682 -9.8254 -1.6010 23 6 -6.6101 -9.7910 -0.0893 24 6 -5.9150 -8.5644 0.5058 25 6 -2.2328 -7.6900 0.7002 26 6 -0.4158 -3.5384 1.5500 27 6 0.2169 -2.3676 1.1998 28 1 -0.4850 0.8401 0.0004 29 1 2.6845 -3.6912 -0.7498 30 1 1.5350 -5.7606 -0.0939 31 1 0.0787 -6.8467 1.5072 32 1 -1.0971 -5.9085 2.4588 33 1 -2.8700 -4.9565 1.5787 34 1 -2.6508 -4.5611 -0.1536 35 1 -4.1736 -6.2941 -0.8555 36 1 -4.9550 -5.7226 0.6563 37 1 -4.6400 -7.7128 -1.6579 38 1 -3.1409 -8.6362 -1.3979 39 1 -4.4276 -10.7506 -1.4422 40 1 -4.6814 -9.8277 -2.9433 41 1 -6.8250 -10.7208 -2.0227 42 1 -6.8088 -8.9407 -2.0605 43 1 -6.2046 -10.6952 0.3646 44 1 -7.6807 -9.7338 0.1072 45 1 -6.0734 -8.5448 1.5841 46 1 -6.3307 -7.6602 0.0612 47 1 -2.0307 -8.3122 -0.1716 48 1 -1.7829 -8.1369 1.5868 49 1 -1.2856 -3.5093 2.1896 50 1 -0.1544 -1.4209 1.5636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343503874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:48 Heat of formation + Delta-G solvation = 6.823413 kcal Electronic energy + Delta-G solvation = -26169.949504 eV Core-core repulsion = 22774.188904 eV Total energy + Delta-G solvation = -3395.760600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.07564 -39.60157 -38.38862 -35.79261 -34.53669 -32.46955 -31.77114 -31.26814 -30.72542 -29.23355 -27.70306 -25.32092 -24.67914 -23.97956 -23.01506 -22.23584 -21.53763 -21.17715 -20.07148 -19.20669 -17.66915 -17.22486 -16.95010 -16.08263 -15.85727 -15.74206 -15.61526 -15.53858 -15.10448 -14.83455 -14.64779 -14.37297 -14.24525 -14.06909 -13.78509 -13.75131 -13.35336 -13.25262 -12.91173 -12.87514 -12.72543 -12.58800 -12.53571 -12.25599 -12.19896 -12.04036 -11.94212 -11.63887 -11.54311 -11.33656 -11.22967 -11.20426 -11.16516 -10.99004 -9.36131 -9.25839 -9.21542 -9.05406 -8.62544 -6.31953 0.96055 1.17754 1.36787 1.47602 1.53457 2.20547 2.66940 2.84790 3.24384 3.64740 3.75103 3.85409 3.87527 3.98063 4.05690 4.11534 4.25841 4.28415 4.34311 4.39667 4.44469 4.50752 4.56061 4.62384 4.66251 4.69950 4.74641 4.80186 4.83018 4.88017 4.92936 5.02513 5.05672 5.06139 5.08211 5.13016 5.17504 5.25042 5.25790 5.33339 5.38969 5.49794 5.50593 5.72767 5.96407 6.04313 6.11989 6.12741 6.18745 6.28804 6.32005 6.41826 6.72312 6.95948 7.06260 8.34164 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.002459 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.324782 B =11382.570201 C =11683.624385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.078 3.922 10 C -0.245 4.245 11 C -0.074 4.074 12 C -0.192 4.192 13 C 0.121 3.879 14 N -0.535 5.535 15 C 0.057 3.943 16 C -0.155 4.155 17 C 0.075 3.925 18 H 0.093 0.907 19 N -0.526 5.526 20 C 0.047 3.953 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.112 4.112 24 C 0.053 3.947 25 C 0.049 3.951 26 C -0.094 4.094 27 C -0.190 4.190 28 H 0.287 0.713 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.029 0.971 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.098 0.902 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -16.325 0.722 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.264 4.264 11 C -0.093 4.093 12 C -0.194 4.194 13 C -0.006 4.006 14 N -0.260 5.260 15 C -0.071 4.071 16 C -0.194 4.194 17 C -0.035 4.035 18 H 0.111 0.889 19 N -0.249 5.249 20 C -0.080 4.080 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.075 4.075 25 C -0.079 4.079 26 C -0.112 4.112 27 C -0.209 4.209 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.047 0.953 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.116 0.884 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.037 -16.630 0.416 21.135 hybrid contribution -0.111 1.999 0.282 2.022 sum -13.147 -14.630 0.698 19.682 Atomic orbital electron populations 1.69890 1.08988 1.30371 1.36073 1.26754 0.95502 1.04493 0.91276 0.85226 0.79122 0.75981 0.79494 1.18697 1.18994 1.18319 1.19818 0.98201 0.92612 1.42666 0.90898 1.17954 0.92031 0.93041 0.89378 1.21175 1.04568 0.93345 1.07349 1.20637 0.95345 0.96634 0.96666 1.19279 0.99677 0.93798 1.06600 1.20874 0.93178 0.94713 0.91787 1.63614 1.10673 1.02090 1.49612 1.22757 0.89806 0.95112 0.99439 1.23323 0.97271 0.97034 1.01816 1.22876 0.94003 0.88105 0.98476 0.88889 1.62075 1.09396 1.43436 1.10035 1.22220 1.00931 0.97558 0.87330 1.21576 0.95735 0.97681 1.00135 1.21586 0.95847 1.02110 0.96298 1.21570 1.00155 0.97802 0.95483 1.22138 0.86713 0.97703 1.00932 1.22905 0.92869 0.90348 1.01733 1.20710 0.98216 0.92645 0.99679 1.21236 1.00281 0.96964 1.02460 0.90284 0.88841 0.86968 0.90183 0.94678 0.94021 0.93322 0.90798 0.90255 0.95228 0.90927 0.91294 0.90978 0.90725 0.92649 0.91305 0.90357 0.90436 0.95263 0.90071 0.91861 0.88355 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.56 10.95 21.83 0.24 -44.32 16 2 C 0.03 1.77 5.15 85.26 0.44 2.21 16 3 Si 0.98 39.28 29.59 68.60 2.03 41.31 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.50 -28.16 9.05 23.46 0.21 -27.95 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.08 4.39 5.57 -21.29 -0.12 4.27 16 10 C -0.24 -12.53 9.80 22.73 0.22 -12.31 16 11 C -0.07 -3.35 9.67 22.22 0.21 -3.13 16 12 C -0.19 -8.21 5.12 -19.68 -0.10 -8.31 16 13 C 0.12 4.08 4.71 85.56 0.40 4.49 16 14 N -0.54 -16.93 5.15 -890.11 -4.59 -21.52 16 15 C 0.06 1.80 5.60 86.77 0.49 2.28 16 16 C -0.15 -3.78 5.74 31.98 0.18 -3.60 16 17 C 0.08 1.64 3.02 46.09 0.14 1.78 16 18 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 19 N -0.53 -10.23 4.68 -864.22 -4.04 -14.27 16 20 C 0.05 0.92 4.63 86.33 0.40 1.32 16 21 C -0.11 -1.77 6.09 30.65 0.19 -1.59 16 22 C -0.12 -1.63 6.00 30.68 0.18 -1.45 16 23 C -0.11 -1.51 6.09 30.65 0.19 -1.32 16 24 C 0.05 0.87 5.24 86.33 0.45 1.32 16 25 C 0.05 1.22 6.37 86.64 0.55 1.77 16 26 C -0.09 -4.39 8.88 22.22 0.20 -4.19 16 27 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 28 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 29 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 30 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 31 H 0.08 2.46 7.97 -2.39 -0.02 2.44 16 32 H 0.04 1.12 7.79 -2.38 -0.02 1.10 16 33 H 0.04 1.32 6.97 -2.39 -0.02 1.30 16 34 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.07 1.90 5.66 -2.39 -0.01 1.88 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.03 0.64 6.19 -2.39 -0.01 0.62 16 38 H 0.07 1.58 5.89 -2.39 -0.01 1.57 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 1.18 8.07 -2.39 -0.02 1.17 16 46 H 0.03 0.51 7.71 -2.39 -0.02 0.49 16 47 H 0.08 2.04 5.78 -2.39 -0.01 2.03 16 48 H 0.06 1.48 7.55 -2.38 -0.02 1.46 16 49 H 0.10 4.17 7.46 -2.91 -0.02 4.15 16 50 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 Total: -1.00 -59.82 375.83 -1.02 -60.85 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.90 Total: 32.46 kcal Atomic # 6 Polarization: -58.94 SS G_CDS: 4.44 Total: -54.50 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -8.39 Total: -80.11 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -59.82 -1.02 -60.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343503874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.669 kcal (2) G-P(sol) polarization free energy of solvation -59.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds