Wall clock time and date at job start Tue Mar 31 2020 11:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86806 * 120.00001 * 2 1 4 4 H 1.48495 * 109.47090 * 269.99851 * 3 2 1 5 5 H 1.48494 * 109.46818 * 30.00162 * 3 2 1 6 6 H 1.48504 * 109.47009 * 149.99696 * 3 2 1 7 7 C 1.39947 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00065 * 197.84851 * 7 2 1 9 9 C 1.41393 * 119.99890 * 17.84502 * 7 2 1 10 10 C 1.40711 * 120.24803 * 204.38639 * 9 7 2 11 11 C 1.37619 * 119.74948 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24678 * 0.02650 * 11 10 9 13 13 C 1.50694 * 119.74924 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47529 * 89.99321 * 13 12 11 15 15 C 1.47907 * 110.99809 * 69.87524 * 14 13 12 16 16 C 1.53993 * 107.05635 * 214.15743 * 15 14 13 17 17 C 1.54588 * 105.13985 * 1.22508 * 16 15 14 18 18 H 1.09004 * 110.72643 * 263.42206 * 17 16 15 19 19 N 1.46897 * 110.72683 * 140.31664 * 17 16 15 20 20 C 1.46847 * 111.00275 * 185.65847 * 19 17 16 21 21 C 1.53034 * 109.52251 * 174.15965 * 20 19 17 22 22 C 1.53116 * 109.27994 * 59.18282 * 21 20 19 23 23 C 1.53122 * 109.16342 * 302.34522 * 22 21 20 24 24 C 1.46856 * 110.99981 * 61.44977 * 19 17 16 25 25 C 1.48526 * 110.99991 * 312.47879 * 14 13 12 26 26 C 1.38638 * 120.50085 * 0.24685 * 12 11 10 27 27 C 1.37616 * 120.24480 * 359.45111 * 26 12 11 28 28 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.12239 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.87657 * 179.97438 * 11 10 9 31 31 H 1.09001 * 109.46897 * 329.99389 * 13 12 11 32 32 H 1.09000 * 109.47241 * 209.99805 * 13 12 11 33 33 H 1.09003 * 109.91800 * 94.80019 * 15 14 13 34 34 H 1.09003 * 109.91203 * 333.51159 * 15 14 13 35 35 H 1.09001 * 110.30330 * 120.14170 * 16 15 14 36 36 H 1.09001 * 110.30254 * 242.30643 * 16 15 14 37 37 H 1.08996 * 109.46767 * 294.18089 * 20 19 17 38 38 H 1.09000 * 109.45722 * 54.14878 * 20 19 17 39 39 H 1.09000 * 109.50623 * 299.24349 * 21 20 19 40 40 H 1.09006 * 109.54025 * 179.14404 * 21 20 19 41 41 H 1.09003 * 109.52686 * 182.43740 * 22 21 20 42 42 H 1.09003 * 109.57776 * 62.27954 * 22 21 20 43 43 H 1.09005 * 109.49970 * 297.71489 * 23 22 21 44 44 H 1.08994 * 109.50851 * 177.59143 * 23 22 21 45 45 H 1.08997 * 109.45781 * 305.86197 * 24 19 17 46 46 H 1.09005 * 109.45805 * 65.83403 * 24 19 17 47 47 H 1.09005 * 110.66552 * 41.28403 * 25 14 13 48 48 H 1.08999 * 110.66665 * 278.15354 * 25 14 13 49 49 H 1.07997 * 119.87754 * 179.71223 * 26 12 11 50 50 H 1.08002 * 120.12653 * 180.27780 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3521 -2.4068 -0.3763 10 6 1.8258 -3.6499 0.0824 11 6 1.1798 -4.8065 -0.2902 12 6 0.0667 -4.7502 -1.1146 13 6 -0.6317 -6.0238 -1.5161 14 7 -1.6776 -6.3393 -0.5339 15 6 -2.7967 -5.3764 -0.6236 16 6 -3.3399 -5.1810 0.8041 17 6 -2.4426 -6.0635 1.7018 18 1 -2.9123 -7.0298 1.8856 19 7 -2.1453 -5.3827 2.9691 20 6 -1.1865 -6.1553 3.7692 21 6 -0.7901 -5.3511 5.0094 22 6 -2.0427 -5.0450 5.8351 23 6 -3.0449 -4.2823 4.9642 24 6 -3.3759 -5.1175 3.7253 25 6 -1.1570 -6.2272 0.8526 26 6 -0.4055 -3.5315 -1.5771 27 6 0.2210 -2.3618 -1.2123 28 1 -0.4850 0.8400 -0.0004 29 1 2.6931 -3.6960 0.7244 30 1 1.5419 -5.7617 0.0603 31 1 0.0911 -6.8388 -1.5516 32 1 -1.0837 -5.8958 -2.4997 33 1 -3.5801 -5.7764 -1.2675 34 1 -2.4378 -4.4257 -1.0178 35 1 -3.2588 -4.1350 1.0997 36 1 -4.3766 -5.5124 0.8630 37 1 -1.6444 -7.0953 4.0770 38 1 -0.2987 -6.3625 3.1717 39 1 -0.3195 -4.4170 4.7023 40 1 -0.0900 -5.9306 5.6113 41 1 -1.7710 -4.4353 6.6969 42 1 -2.4923 -5.9776 6.1760 43 1 -2.6097 -3.3314 4.6564 44 1 -3.9561 -4.0988 5.5335 45 1 -4.0782 -4.5710 3.0959 46 1 -3.8235 -6.0624 4.0334 47 1 -0.5155 -5.3517 0.9530 48 1 -0.6210 -7.1328 1.1366 49 1 -1.2707 -3.4997 -2.2227 50 1 -0.1511 -1.4131 -1.5701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343503888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:52 Heat of formation + Delta-G solvation = 19.160319 kcal Electronic energy + Delta-G solvation = -27416.149957 eV Core-core repulsion = 24020.924326 eV Total energy + Delta-G solvation = -3395.225631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.68997 -38.26905 -36.75622 -34.09454 -33.13019 -31.14737 -30.75387 -29.58081 -28.91375 -27.78516 -26.04301 -24.09705 -23.33715 -22.77108 -21.11160 -20.54384 -19.85551 -19.52997 -19.45755 -17.29841 -16.52160 -15.67131 -15.24373 -14.73970 -14.60044 -14.45390 -14.28537 -13.90199 -13.72711 -13.57486 -13.28510 -13.17844 -12.90442 -12.53800 -12.39435 -12.15924 -11.97032 -11.66410 -11.33737 -11.21327 -11.13324 -11.01578 -10.94591 -10.84009 -10.72865 -10.64075 -10.53225 -10.39277 -10.29227 -10.14554 -10.10389 -9.72746 -9.39267 -9.11967 -8.08080 -7.81913 -7.43825 -7.27484 -6.76167 -4.34804 2.74469 3.05222 3.07273 3.09993 3.18526 3.92689 3.95291 4.56579 4.75310 4.83888 4.90989 5.00811 5.03402 5.13234 5.33852 5.41238 5.50451 5.58115 5.65008 5.69836 5.69945 5.79110 5.82874 5.89173 5.92740 5.99185 6.02839 6.05977 6.14561 6.23657 6.25837 6.28274 6.30882 6.34454 6.38663 6.46108 6.47972 6.58740 6.66687 6.93636 7.05961 7.18603 7.28355 7.31363 7.37518 7.49803 7.57196 7.61260 7.86437 8.05129 8.11184 8.29994 8.64074 8.89766 8.97710 10.17991 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.004751 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.734283 B = 5892.349318 C = 7294.023964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.115 3.885 10 C -0.225 4.225 11 C -0.076 4.076 12 C -0.246 4.246 13 C 0.104 3.896 14 N -0.515 5.515 15 C 0.031 3.969 16 C -0.119 4.119 17 C 0.083 3.917 18 H 0.043 0.957 19 N -0.524 5.524 20 C 0.058 3.942 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.118 4.118 24 C 0.058 3.942 25 C 0.035 3.965 26 C -0.090 4.090 27 C -0.165 4.165 28 H 0.280 0.720 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -8.275 6.108 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.095 4.095 12 C -0.249 4.249 13 C -0.023 4.023 14 N -0.238 5.238 15 C -0.098 4.098 16 C -0.158 4.158 17 C -0.025 4.025 18 H 0.061 0.939 19 N -0.249 5.249 20 C -0.070 4.070 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.070 4.070 25 C -0.093 4.093 26 C -0.109 4.109 27 C -0.184 4.184 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.109 0.891 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.425 -8.220 5.882 11.977 hybrid contribution 0.212 0.860 0.421 0.981 sum -6.213 -7.359 6.303 11.510 Atomic orbital electron populations 1.69833 1.07535 1.29117 1.34979 1.25893 0.94693 1.01221 0.92276 0.86352 0.80558 0.80752 0.79305 1.19297 1.20329 1.18632 1.19601 0.98107 0.91352 1.40141 0.90552 1.17593 0.90988 0.91949 0.88234 1.20937 1.03659 0.92961 1.06898 1.20317 0.95221 0.96213 0.97737 1.19544 1.01759 0.94273 1.09323 1.20942 0.92444 0.94429 0.94529 1.65180 1.08249 1.46630 1.03694 1.22860 0.94026 0.96509 0.96377 1.22398 0.97800 1.00941 0.94617 1.22469 0.96471 0.94651 0.88953 0.93882 1.61933 1.11992 1.47058 1.03953 1.22046 0.96357 0.93931 0.94623 1.21590 0.97219 1.01303 0.95488 1.21558 0.96293 0.99797 0.98002 1.21590 0.98800 0.99776 0.95401 1.22047 0.91786 0.98186 0.95006 1.23403 0.96044 1.02192 0.87697 1.20514 0.98012 0.92846 0.99510 1.21283 0.99415 0.96649 1.01073 0.90940 0.89248 0.89819 0.91717 0.91868 0.91649 0.91727 0.90267 0.92278 0.95624 0.90463 0.90613 0.91889 0.92081 0.92751 0.90750 0.91988 0.90737 0.95638 0.89131 0.91822 0.89794 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.34 10.95 55.55 0.61 -19.73 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.25 9.05 -37.74 -0.34 -12.59 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.11 3.04 5.57 -106.83 -0.60 2.44 16 10 C -0.22 -5.47 9.80 -38.87 -0.38 -5.85 16 11 C -0.08 -1.66 7.45 -39.66 -0.30 -1.95 16 12 C -0.25 -5.19 3.98 -104.33 -0.41 -5.60 16 13 C 0.10 1.85 5.69 -4.98 -0.03 1.83 16 14 N -0.51 -8.77 5.54 -231.89 -1.28 -10.06 16 15 C 0.03 0.50 6.46 -2.75 -0.02 0.49 16 16 C -0.12 -1.83 5.38 -25.38 -0.14 -1.97 16 17 C 0.08 1.28 2.76 -65.86 -0.18 1.10 16 18 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 19 N -0.52 -7.90 4.49 -224.47 -1.01 -8.91 16 20 C 0.06 0.80 5.30 -3.84 -0.02 0.78 16 21 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 22 C -0.12 -1.33 6.00 -26.61 -0.16 -1.49 16 23 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 24 C 0.06 0.75 5.29 -3.83 -0.02 0.73 16 25 C 0.03 0.59 4.41 -1.90 -0.01 0.58 16 26 C -0.09 -2.05 8.15 -39.66 -0.32 -2.37 16 27 C -0.16 -4.23 8.70 -38.87 -0.34 -4.57 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 29 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 30 H 0.08 1.65 8.05 -52.49 -0.42 1.23 16 31 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.20 4.86 -51.93 -0.25 0.95 16 35 H 0.08 1.36 7.74 -51.93 -0.40 0.96 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 1.11 6.80 -51.93 -0.35 0.76 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.97 6.82 -51.93 -0.35 0.62 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 1.84 4.85 -51.93 -0.25 1.59 16 48 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16 49 H 0.08 1.76 7.18 -52.49 -0.38 1.39 16 50 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -26.43 373.45 -13.37 -39.79 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.60 Total: 9.45 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -3.68 Total: -29.82 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -1.68 Total: -38.69 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -26.43 -13.37 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343503888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.951 kcal (2) G-P(sol) polarization free energy of solvation -26.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds