Wall clock time and date at job start Tue Mar 31 2020 11:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86806 * 120.00001 * 2 1 4 4 H 1.48495 * 109.47090 * 269.99851 * 3 2 1 5 5 H 1.48494 * 109.46818 * 30.00162 * 3 2 1 6 6 H 1.48504 * 109.47009 * 149.99696 * 3 2 1 7 7 C 1.39947 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00065 * 197.84851 * 7 2 1 9 9 C 1.41393 * 119.99890 * 17.84502 * 7 2 1 10 10 C 1.40711 * 120.24803 * 204.38639 * 9 7 2 11 11 C 1.37619 * 119.74948 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24678 * 0.02650 * 11 10 9 13 13 C 1.50694 * 119.74924 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47529 * 89.99321 * 13 12 11 15 15 C 1.47907 * 110.99809 * 69.87524 * 14 13 12 16 16 C 1.53993 * 107.05635 * 214.15743 * 15 14 13 17 17 C 1.54588 * 105.13985 * 1.22508 * 16 15 14 18 18 H 1.09004 * 110.72643 * 263.42206 * 17 16 15 19 19 N 1.46897 * 110.72683 * 140.31664 * 17 16 15 20 20 C 1.46847 * 111.00275 * 185.65847 * 19 17 16 21 21 C 1.53034 * 109.52251 * 174.15965 * 20 19 17 22 22 C 1.53116 * 109.27994 * 59.18282 * 21 20 19 23 23 C 1.53122 * 109.16342 * 302.34522 * 22 21 20 24 24 C 1.46856 * 110.99981 * 61.44977 * 19 17 16 25 25 C 1.48526 * 110.99991 * 312.47879 * 14 13 12 26 26 C 1.38638 * 120.50085 * 0.24685 * 12 11 10 27 27 C 1.37616 * 120.24480 * 359.45111 * 26 12 11 28 28 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.12239 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.87657 * 179.97438 * 11 10 9 31 31 H 1.09001 * 109.46897 * 329.99389 * 13 12 11 32 32 H 1.09000 * 109.47241 * 209.99805 * 13 12 11 33 33 H 1.09003 * 109.91800 * 94.80019 * 15 14 13 34 34 H 1.09003 * 109.91203 * 333.51159 * 15 14 13 35 35 H 1.09001 * 110.30330 * 120.14170 * 16 15 14 36 36 H 1.09001 * 110.30254 * 242.30643 * 16 15 14 37 37 H 1.08996 * 109.46767 * 294.18089 * 20 19 17 38 38 H 1.09000 * 109.45722 * 54.14878 * 20 19 17 39 39 H 1.09000 * 109.50623 * 299.24349 * 21 20 19 40 40 H 1.09006 * 109.54025 * 179.14404 * 21 20 19 41 41 H 1.09003 * 109.52686 * 182.43740 * 22 21 20 42 42 H 1.09003 * 109.57776 * 62.27954 * 22 21 20 43 43 H 1.09005 * 109.49970 * 297.71489 * 23 22 21 44 44 H 1.08994 * 109.50851 * 177.59143 * 23 22 21 45 45 H 1.08997 * 109.45781 * 305.86197 * 24 19 17 46 46 H 1.09005 * 109.45805 * 65.83403 * 24 19 17 47 47 H 1.09005 * 110.66552 * 41.28403 * 25 14 13 48 48 H 1.08999 * 110.66665 * 278.15354 * 25 14 13 49 49 H 1.07997 * 119.87754 * 179.71223 * 26 12 11 50 50 H 1.08002 * 120.12653 * 180.27780 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3521 -2.4068 -0.3763 10 6 1.8258 -3.6499 0.0824 11 6 1.1798 -4.8065 -0.2902 12 6 0.0667 -4.7502 -1.1146 13 6 -0.6317 -6.0238 -1.5161 14 7 -1.6776 -6.3393 -0.5339 15 6 -2.7967 -5.3764 -0.6236 16 6 -3.3399 -5.1810 0.8041 17 6 -2.4426 -6.0635 1.7018 18 1 -2.9123 -7.0298 1.8856 19 7 -2.1453 -5.3827 2.9691 20 6 -1.1865 -6.1553 3.7692 21 6 -0.7901 -5.3511 5.0094 22 6 -2.0427 -5.0450 5.8351 23 6 -3.0449 -4.2823 4.9642 24 6 -3.3759 -5.1175 3.7253 25 6 -1.1570 -6.2272 0.8526 26 6 -0.4055 -3.5315 -1.5771 27 6 0.2210 -2.3618 -1.2123 28 1 -0.4850 0.8400 -0.0004 29 1 2.6931 -3.6960 0.7244 30 1 1.5419 -5.7617 0.0603 31 1 0.0911 -6.8388 -1.5516 32 1 -1.0837 -5.8958 -2.4997 33 1 -3.5801 -5.7764 -1.2675 34 1 -2.4378 -4.4257 -1.0178 35 1 -3.2588 -4.1350 1.0997 36 1 -4.3766 -5.5124 0.8630 37 1 -1.6444 -7.0953 4.0770 38 1 -0.2987 -6.3625 3.1717 39 1 -0.3195 -4.4170 4.7023 40 1 -0.0900 -5.9306 5.6113 41 1 -1.7710 -4.4353 6.6969 42 1 -2.4923 -5.9776 6.1760 43 1 -2.6097 -3.3314 4.6564 44 1 -3.9561 -4.0988 5.5335 45 1 -4.0782 -4.5710 3.0959 46 1 -3.8235 -6.0624 4.0334 47 1 -0.5155 -5.3517 0.9530 48 1 -0.6210 -7.1328 1.1366 49 1 -1.2707 -3.4997 -2.2227 50 1 -0.1511 -1.4131 -1.5701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343503888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:51 Heat of formation + Delta-G solvation = 5.218701 kcal Electronic energy + Delta-G solvation = -27416.754511 eV Core-core repulsion = 24020.924326 eV Total energy + Delta-G solvation = -3395.830185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.01058 -39.68573 -38.29157 -35.76184 -34.52865 -32.55540 -31.91025 -31.36056 -30.55473 -29.12058 -27.69542 -25.54744 -24.53046 -23.95418 -22.92710 -22.14531 -21.08218 -21.01057 -20.59968 -19.21881 -17.72586 -17.27339 -16.84037 -16.11715 -15.87031 -15.68789 -15.64208 -15.52561 -15.17102 -14.99325 -14.48518 -14.37197 -14.26586 -14.05809 -13.87626 -13.73535 -13.31689 -13.18339 -13.01668 -12.81842 -12.57308 -12.38462 -12.26510 -12.15347 -12.14108 -12.04753 -11.97108 -11.73103 -11.54339 -11.52152 -11.25101 -11.18354 -11.15015 -10.99509 -9.38232 -9.23664 -9.20488 -9.12882 -8.63779 -6.33131 0.94907 1.14811 1.35598 1.48583 1.49836 2.19234 2.69181 2.82999 3.42995 3.62394 3.77122 3.82887 3.92624 4.01740 4.02900 4.17667 4.30235 4.33908 4.35411 4.46034 4.50939 4.54193 4.55002 4.64197 4.65136 4.69655 4.81502 4.82794 4.92138 4.96021 4.99728 5.02505 5.05119 5.07296 5.11435 5.14651 5.21813 5.22552 5.26487 5.31794 5.36812 5.46831 5.49473 5.69587 5.88506 5.98182 6.10337 6.11685 6.25083 6.27985 6.31605 6.39958 6.70920 6.94853 7.04524 8.32649 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.004751 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.734283 B = 5892.349318 C = 7294.023964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.071 0.929 9 C 0.084 3.916 10 C -0.242 4.242 11 C -0.071 4.071 12 C -0.228 4.228 13 C 0.107 3.893 14 N -0.505 5.505 15 C 0.028 3.972 16 C -0.114 4.114 17 C 0.090 3.910 18 H 0.057 0.943 19 N -0.549 5.549 20 C 0.059 3.941 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.117 4.117 24 C 0.058 3.942 25 C 0.037 3.963 26 C -0.091 4.091 27 C -0.189 4.189 28 H 0.286 0.714 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.041 0.959 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.100 0.900 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -10.089 6.720 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.089 0.911 9 C 0.081 3.919 10 C -0.262 4.262 11 C -0.090 4.090 12 C -0.231 4.231 13 C -0.021 4.021 14 N -0.227 5.227 15 C -0.100 4.100 16 C -0.153 4.153 17 C -0.018 4.018 18 H 0.075 0.925 19 N -0.275 5.275 20 C -0.068 4.068 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.155 4.155 24 C -0.069 4.069 25 C -0.091 4.091 26 C -0.109 4.109 27 C -0.209 4.209 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.531 -10.050 6.497 14.140 hybrid contribution 0.490 1.276 0.228 1.386 sum -7.041 -8.774 6.725 13.107 Atomic orbital electron populations 1.69894 1.08941 1.30329 1.35721 1.26712 0.95447 1.04361 0.91273 0.85257 0.79120 0.76134 0.79532 1.18636 1.19219 1.18288 1.19822 0.98226 0.92750 1.42431 0.91053 1.17911 0.91853 0.92947 0.89143 1.21111 1.04251 0.93380 1.07421 1.20576 0.94949 0.96418 0.97061 1.19934 1.00737 0.95226 1.07174 1.21004 0.92866 0.92866 0.95321 1.65231 1.07825 1.46228 1.03454 1.22927 0.94394 0.95291 0.97370 1.22355 0.99390 0.99567 0.93963 1.22393 0.95350 0.95143 0.88963 0.92526 1.61912 1.13301 1.47768 1.04503 1.22044 0.95666 0.94575 0.94562 1.21583 0.98280 0.99997 0.95671 1.21541 0.95268 1.00619 0.97749 1.21592 0.99902 0.98457 0.95537 1.22079 0.90919 0.98912 0.95021 1.23330 0.96542 1.01044 0.88217 1.20730 0.98103 0.92686 0.99423 1.21223 1.00336 0.96955 1.02391 0.90315 0.89154 0.87265 0.90094 0.90571 0.89324 0.94291 0.92848 0.89657 0.94018 0.91839 0.93630 0.90078 0.91135 0.90995 0.93458 0.89789 0.91187 0.94082 0.92687 0.90674 0.88177 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.29 10.95 21.83 0.24 -44.05 16 2 C 0.04 1.92 5.14 85.26 0.44 2.36 16 3 Si 0.98 39.33 29.60 68.60 2.03 41.36 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.50 -28.02 9.05 23.46 0.21 -27.80 16 8 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 9 C 0.08 4.65 5.57 -21.29 -0.12 4.53 16 10 C -0.24 -12.17 9.80 22.73 0.22 -11.95 16 11 C -0.07 -3.11 7.45 22.22 0.17 -2.94 16 12 C -0.23 -9.47 3.98 -19.68 -0.08 -9.55 16 13 C 0.11 3.57 5.69 85.55 0.49 4.05 16 14 N -0.51 -16.01 5.54 -887.57 -4.91 -20.92 16 15 C 0.03 0.89 6.46 86.44 0.56 1.44 16 16 C -0.11 -3.36 5.38 31.47 0.17 -3.19 16 17 C 0.09 2.62 2.76 46.12 0.13 2.74 16 18 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 19 N -0.55 -16.09 4.49 -864.09 -3.88 -19.98 16 20 C 0.06 1.54 5.30 86.32 0.46 2.00 16 21 C -0.12 -2.85 6.09 30.64 0.19 -2.66 16 22 C -0.11 -2.34 6.00 30.67 0.18 -2.15 16 23 C -0.12 -2.67 6.09 30.65 0.19 -2.48 16 24 C 0.06 1.42 5.29 86.32 0.46 1.88 16 25 C 0.04 1.20 4.41 86.65 0.38 1.58 16 26 C -0.09 -4.19 8.15 22.22 0.18 -4.01 16 27 C -0.19 -10.18 8.70 22.73 0.20 -9.99 16 28 H 0.29 13.96 8.30 -92.71 -0.77 13.20 16 29 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.11 4.16 8.05 -2.91 -0.02 4.13 16 31 H 0.08 2.49 8.08 -2.39 -0.02 2.47 16 32 H 0.08 2.38 8.02 -2.39 -0.02 2.36 16 33 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.04 1.42 4.86 -2.39 -0.01 1.41 16 35 H 0.05 1.85 7.74 -2.39 -0.02 1.83 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.80 6.80 -2.39 -0.02 1.78 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.75 6.82 -2.39 -0.02 1.73 16 46 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 47 H 0.06 2.22 4.85 -2.38 -0.01 2.21 16 48 H 0.07 2.26 7.86 -2.39 -0.02 2.24 16 49 H 0.10 4.22 7.18 -2.91 -0.02 4.20 16 50 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 Total: -1.00 -59.75 373.45 -1.21 -60.96 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: 0.90 Total: 38.76 kcal Atomic # 6 Polarization: -60.55 SS G_CDS: 4.42 Total: -56.14 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -8.55 Total: -84.95 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -59.75 -1.21 -60.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343503888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.183 kcal (2) G-P(sol) polarization free energy of solvation -59.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds