Wall clock time and date at job start Tue Mar 31 2020 11:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00483 * 2 1 4 4 H 1.48503 * 109.46912 * 269.99575 * 3 2 1 5 5 H 1.48500 * 109.46934 * 29.99539 * 3 2 1 6 6 H 1.48500 * 109.47317 * 149.99545 * 3 2 1 7 7 C 1.39952 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00124 * 192.89189 * 7 2 1 9 9 C 1.41396 * 119.99986 * 12.89453 * 7 2 1 10 10 C 1.40720 * 120.24216 * 27.89476 * 9 7 2 11 11 C 1.37615 * 119.74346 * 179.97438 * 10 9 7 12 12 C 1.38636 * 120.24880 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.75276 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.47487 * 89.99567 * 13 12 11 15 15 C 1.47900 * 111.00241 * 290.13109 * 14 13 12 16 16 C 1.53990 * 107.05822 * 145.83889 * 15 14 13 17 17 C 1.54594 * 105.13964 * 358.77704 * 16 15 14 18 18 H 1.09002 * 110.72423 * 96.40227 * 17 16 15 19 19 C 1.53000 * 110.72489 * 219.50412 * 17 16 15 20 20 N 1.46899 * 109.47580 * 184.51488 * 19 17 16 21 21 C 1.48534 * 110.99578 * 58.15906 * 20 19 17 22 22 C 1.54947 * 103.22513 * 159.72212 * 21 20 19 23 23 C 1.54593 * 102.92198 * 322.58914 * 22 21 20 24 24 C 1.47902 * 111.00189 * 175.55755 * 20 19 17 25 25 C 1.48539 * 110.99441 * 47.52617 * 14 13 12 26 26 C 1.38635 * 120.50004 * 0.27282 * 12 11 10 27 27 C 1.37612 * 120.24994 * 359.44888 * 26 12 11 28 28 H 0.97006 * 119.99068 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.12785 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.87757 * 179.97438 * 11 10 9 31 31 H 1.09003 * 109.46854 * 330.00019 * 13 12 11 32 32 H 1.08994 * 109.47369 * 210.00254 * 13 12 11 33 33 H 1.09003 * 109.91744 * 26.48769 * 15 14 13 34 34 H 1.08998 * 109.91762 * 265.19875 * 15 14 13 35 35 H 1.09000 * 110.31374 * 239.85676 * 16 15 14 36 36 H 1.09003 * 110.39330 * 117.73490 * 16 15 14 37 37 H 1.09002 * 109.47302 * 304.51734 * 19 17 16 38 38 H 1.09002 * 109.47392 * 64.51475 * 19 17 16 39 39 H 1.09000 * 110.67155 * 278.15702 * 21 20 19 40 40 H 1.09001 * 110.66887 * 41.29311 * 21 20 19 41 41 H 1.08996 * 110.72396 * 204.22833 * 22 21 20 42 42 H 1.09003 * 110.87260 * 81.01840 * 22 21 20 43 43 H 1.08996 * 110.30837 * 263.04073 * 23 22 21 44 44 H 1.08995 * 110.39594 * 140.91430 * 23 22 21 45 45 H 1.08996 * 109.91866 * 333.50994 * 24 20 19 46 46 H 1.09002 * 109.91757 * 94.60801 * 24 20 19 47 47 H 1.08998 * 110.66697 * 81.84826 * 25 14 13 48 48 H 1.08994 * 110.66891 * 318.71185 * 25 14 13 49 49 H 1.08007 * 119.87713 * 179.70470 * 26 12 11 50 50 H 1.08000 * 120.13060 * 180.27384 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4900 2.0462 -1.4001 5 1 1.4398 2.6526 0.6999 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0675 -1.2239 0.2092 9 6 1.3276 -2.4212 -0.2722 10 6 0.1778 -2.4201 -1.0834 11 6 -0.4760 -3.6029 -1.3427 12 6 -0.0063 -4.7924 -0.8075 13 6 -0.7307 -6.0813 -1.0990 14 7 -0.1746 -6.6916 -2.3141 15 6 -0.5303 -5.9031 -3.5138 16 6 0.6563 -6.0056 -4.4899 17 6 1.7085 -6.8691 -3.7570 18 1 1.6362 -7.9115 -4.0675 19 6 3.1188 -6.3295 -4.0039 20 7 4.1024 -7.2292 -3.3868 21 6 3.9785 -8.6061 -3.9298 22 6 5.3525 -9.2421 -3.6005 23 6 6.3375 -8.0716 -3.8229 24 6 5.4829 -6.7969 -3.6950 25 6 1.3099 -6.7115 -2.2681 26 6 1.1219 -4.8045 -0.0019 27 6 1.7950 -3.6345 0.2660 28 1 -0.4849 0.8402 -0.0004 29 1 -0.1901 -1.4946 -1.5010 30 1 -1.3590 -3.6045 -1.9647 31 1 -1.7909 -5.8766 -1.2479 32 1 -0.6072 -6.7655 -0.2596 33 1 -0.6953 -4.8615 -3.2380 34 1 -1.4278 -6.3143 -3.9757 35 1 1.0598 -5.0152 -4.7004 36 1 0.3462 -6.4915 -5.4150 37 1 3.3028 -6.2709 -5.0766 38 1 3.2097 -5.3359 -3.5649 39 1 3.1747 -9.1462 -3.4294 40 1 3.8144 -8.5815 -5.0072 41 1 5.5702 -10.0643 -4.2821 42 1 5.3849 -9.5822 -2.5654 43 1 6.7791 -8.1326 -4.8175 44 1 7.1177 -8.0819 -3.0619 45 1 5.4978 -6.2440 -4.6342 46 1 5.8643 -6.1699 -2.8891 47 1 1.6653 -7.5596 -1.6829 48 1 1.6949 -5.7754 -1.8638 49 1 1.4764 -5.7362 0.4137 50 1 2.6762 -3.6467 0.8903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343522993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:52 Heat of formation + Delta-G solvation = 21.957357 kcal Electronic energy + Delta-G solvation = -26841.749773 eV Core-core repulsion = 23446.645431 eV Total energy + Delta-G solvation = -3395.104343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.60073 -38.55998 -36.97619 -34.15558 -33.10052 -31.29814 -29.62391 -29.34210 -28.93522 -28.14153 -26.43865 -24.65959 -23.32342 -21.52234 -21.09708 -20.89290 -20.46771 -19.54483 -19.37876 -17.29082 -16.35162 -16.03544 -15.43688 -15.21187 -14.94881 -14.62118 -14.03503 -13.83468 -13.78077 -13.65890 -13.22902 -12.98096 -12.61740 -12.53662 -12.40533 -12.04667 -11.91935 -11.61495 -11.49360 -11.34980 -11.21260 -11.14366 -11.08216 -10.90100 -10.76144 -10.70896 -10.68184 -10.56582 -10.45771 -10.25970 -10.07957 -9.72113 -9.37852 -9.18792 -8.36635 -7.79009 -7.45091 -7.24976 -6.72959 -4.37536 2.73597 3.03639 3.06551 3.09674 3.17019 3.92919 3.96525 4.49318 4.57493 4.61509 4.74376 4.82744 5.00772 5.06851 5.18914 5.24183 5.38253 5.44721 5.56553 5.64164 5.67060 5.69434 5.72010 5.75051 5.85877 5.90802 5.95946 6.01951 6.04529 6.06746 6.11446 6.15595 6.25146 6.32336 6.35323 6.45854 6.51625 6.61620 6.70634 6.91671 6.93095 7.07219 7.07592 7.23539 7.32293 7.45418 7.59991 7.60871 7.85033 8.04680 8.10111 8.29583 8.63496 8.89345 8.96127 10.21180 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003770 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.470665 B = 7424.997787 C = 8739.492782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.161 4.161 11 C -0.093 4.093 12 C -0.241 4.241 13 C 0.103 3.897 14 N -0.517 5.517 15 C 0.028 3.972 16 C -0.123 4.123 17 C -0.087 4.087 18 H 0.074 0.926 19 C 0.057 3.943 20 N -0.511 5.511 21 C 0.034 3.966 22 C -0.124 4.124 23 C -0.130 4.130 24 C 0.034 3.966 25 C 0.044 3.956 26 C -0.077 4.077 27 C -0.222 4.222 28 H 0.279 0.721 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 -12.210 -8.917 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.111 3.889 10 C -0.180 4.180 11 C -0.112 4.112 12 C -0.243 4.243 13 C -0.025 4.025 14 N -0.240 5.240 15 C -0.100 4.100 16 C -0.161 4.161 17 C -0.107 4.107 18 H 0.092 0.908 19 C -0.071 4.071 20 N -0.235 5.235 21 C -0.094 4.094 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.094 4.094 25 C -0.083 4.083 26 C -0.096 4.096 27 C -0.242 4.242 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.105 0.895 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.121 -12.560 -8.363 15.935 hybrid contribution 0.734 1.792 -0.755 2.079 sum 5.855 -10.768 -9.118 15.276 Atomic orbital electron populations 1.69810 1.07444 1.28990 1.36324 1.25883 0.94783 1.01170 0.92394 0.86306 0.80434 0.80704 0.79224 1.19380 1.20318 1.18667 1.19596 0.96456 0.90776 1.42633 0.90605 1.17619 0.91249 0.91993 0.88079 1.21314 0.99018 0.96405 1.01311 1.20547 0.98297 0.92925 0.99472 1.19605 1.01381 0.94499 1.08850 1.20939 0.97280 0.92357 0.91884 1.65210 1.09238 1.47124 1.02390 1.22871 0.97308 0.98410 0.91390 1.22374 0.95768 0.99910 0.98094 1.22064 0.92535 0.99179 0.96878 0.90768 1.22351 0.91410 0.97206 0.96139 1.64765 1.02295 1.01814 1.54630 1.23235 0.97966 0.90539 0.97611 1.22477 0.94411 0.97168 1.02145 1.22385 0.98242 0.94625 1.01598 1.22866 0.89209 0.97112 1.00196 1.23314 0.87696 1.02553 0.94784 1.20373 0.95363 0.96263 0.97592 1.21012 1.03223 0.93358 1.06564 0.91001 0.86573 0.89731 0.91976 0.91647 0.92028 0.91683 0.91606 0.91985 0.95095 0.90098 0.89866 0.94128 0.91430 0.90718 0.91865 0.91090 0.94049 0.90185 0.91145 0.90515 0.89533 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 10.90 55.55 0.61 -20.16 16 2 C 0.07 1.87 5.22 -17.34 -0.09 1.78 16 3 Si 0.91 18.78 29.58 -169.99 -5.03 13.76 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.33 9.06 -37.74 -0.34 -12.67 16 8 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 9 C 0.11 2.99 5.55 -106.82 -0.59 2.39 16 10 C -0.16 -4.12 8.67 -38.87 -0.34 -4.46 16 11 C -0.09 -2.12 8.15 -39.66 -0.32 -2.45 16 12 C -0.24 -5.08 3.97 -104.33 -0.41 -5.50 16 13 C 0.10 1.85 5.69 -4.98 -0.03 1.83 16 14 N -0.52 -8.65 5.54 -231.90 -1.28 -9.93 16 15 C 0.03 0.45 6.46 -2.76 -0.02 0.43 16 16 C -0.12 -1.71 6.51 -25.38 -0.17 -1.88 16 17 C -0.09 -1.21 2.89 -88.76 -0.26 -1.47 16 18 H 0.07 0.99 6.60 -51.93 -0.34 0.65 16 19 C 0.06 0.77 4.16 -3.82 -0.02 0.76 16 20 N -0.51 -6.52 5.27 -230.44 -1.21 -7.74 16 21 C 0.03 0.37 5.36 -1.89 -0.01 0.36 16 22 C -0.12 -1.13 7.06 -24.87 -0.18 -1.31 16 23 C -0.13 -1.19 6.93 -25.37 -0.18 -1.37 16 24 C 0.03 0.39 6.70 -2.75 -0.02 0.37 16 25 C 0.04 0.72 5.42 -1.90 -0.01 0.71 16 26 C -0.08 -1.69 7.47 -39.66 -0.30 -1.99 16 27 C -0.22 -5.41 9.80 -38.87 -0.38 -5.79 16 28 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 29 H 0.12 3.11 6.23 -52.49 -0.33 2.78 16 30 H 0.08 1.77 7.16 -52.49 -0.38 1.40 16 31 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 32 H 0.07 1.14 8.08 -51.93 -0.42 0.73 16 33 H 0.06 1.08 4.84 -51.93 -0.25 0.83 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 16 38 H 0.08 1.25 8.02 -51.93 -0.42 0.84 16 39 H 0.08 0.92 7.49 -51.93 -0.39 0.53 16 40 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.04 0.45 7.66 -51.93 -0.40 0.06 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 48 H 0.08 1.49 4.68 -51.93 -0.24 1.24 16 49 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 50 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -26.61 377.71 -13.47 -40.08 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.59 Total: 8.56 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -3.65 Total: -30.26 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -1.89 Total: -37.83 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -26.61 -13.47 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.038 kcal (2) G-P(sol) polarization free energy of solvation -26.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds