Wall clock time and date at job start Tue Mar 31 2020 11:05:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30827 * 1
3 3 Si 1.86796 * 120.00483 * 2 1
4 4 H 1.48503 * 109.46912 * 269.99575 * 3 2 1
5 5 H 1.48500 * 109.46934 * 29.99539 * 3 2 1
6 6 H 1.48500 * 109.47317 * 149.99545 * 3 2 1
7 7 C 1.39952 * 119.99556 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00124 * 192.89189 * 7 2 1
9 9 C 1.41396 * 119.99986 * 12.89453 * 7 2 1
10 10 C 1.40720 * 120.24216 * 27.89476 * 9 7 2
11 11 C 1.37615 * 119.74346 * 179.97438 * 10 9 7
12 12 C 1.38636 * 120.24880 * 0.02562 * 11 10 9
13 13 C 1.50699 * 119.75276 * 180.02562 * 12 11 10
14 14 N 1.46900 * 109.47487 * 89.99567 * 13 12 11
15 15 C 1.47900 * 111.00241 * 290.13109 * 14 13 12
16 16 C 1.53990 * 107.05822 * 145.83889 * 15 14 13
17 17 C 1.54594 * 105.13964 * 358.77704 * 16 15 14
18 18 H 1.09002 * 110.72423 * 96.40227 * 17 16 15
19 19 C 1.53000 * 110.72489 * 219.50412 * 17 16 15
20 20 N 1.46899 * 109.47580 * 184.51488 * 19 17 16
21 21 C 1.48534 * 110.99578 * 58.15906 * 20 19 17
22 22 C 1.54947 * 103.22513 * 159.72212 * 21 20 19
23 23 C 1.54593 * 102.92198 * 322.58914 * 22 21 20
24 24 C 1.47902 * 111.00189 * 175.55755 * 20 19 17
25 25 C 1.48539 * 110.99441 * 47.52617 * 14 13 12
26 26 C 1.38635 * 120.50004 * 0.27282 * 12 11 10
27 27 C 1.37612 * 120.24994 * 359.44888 * 26 12 11
28 28 H 0.97006 * 119.99068 * 0.02562 * 1 2 3
29 29 H 1.07996 * 120.12785 * 359.97438 * 10 9 7
30 30 H 1.08002 * 119.87757 * 179.97438 * 11 10 9
31 31 H 1.09003 * 109.46854 * 330.00019 * 13 12 11
32 32 H 1.08994 * 109.47369 * 210.00254 * 13 12 11
33 33 H 1.09003 * 109.91744 * 26.48769 * 15 14 13
34 34 H 1.08998 * 109.91762 * 265.19875 * 15 14 13
35 35 H 1.09000 * 110.31374 * 239.85676 * 16 15 14
36 36 H 1.09003 * 110.39330 * 117.73490 * 16 15 14
37 37 H 1.09002 * 109.47302 * 304.51734 * 19 17 16
38 38 H 1.09002 * 109.47392 * 64.51475 * 19 17 16
39 39 H 1.09000 * 110.67155 * 278.15702 * 21 20 19
40 40 H 1.09001 * 110.66887 * 41.29311 * 21 20 19
41 41 H 1.08996 * 110.72396 * 204.22833 * 22 21 20
42 42 H 1.09003 * 110.87260 * 81.01840 * 22 21 20
43 43 H 1.08996 * 110.30837 * 263.04073 * 23 22 21
44 44 H 1.08995 * 110.39594 * 140.91430 * 23 22 21
45 45 H 1.08996 * 109.91866 * 333.50994 * 24 20 19
46 46 H 1.09002 * 109.91757 * 94.60801 * 24 20 19
47 47 H 1.08998 * 110.66697 * 81.84826 * 25 14 13
48 48 H 1.08994 * 110.66891 * 318.71185 * 25 14 13
49 49 H 1.08007 * 119.87713 * 179.70470 * 26 12 11
50 50 H 1.08000 * 120.13060 * 180.27384 * 27 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2424 1.6176 0.0000
4 1 2.4900 2.0462 -1.4001
5 1 1.4398 2.6526 0.6999
6 1 3.5399 1.4400 0.7001
7 6 2.0079 -1.2121 0.0005
8 1 3.0675 -1.2239 0.2092
9 6 1.3276 -2.4212 -0.2722
10 6 0.1778 -2.4201 -1.0834
11 6 -0.4760 -3.6029 -1.3427
12 6 -0.0063 -4.7924 -0.8075
13 6 -0.7307 -6.0813 -1.0990
14 7 -0.1746 -6.6916 -2.3141
15 6 -0.5303 -5.9031 -3.5138
16 6 0.6563 -6.0056 -4.4899
17 6 1.7085 -6.8691 -3.7570
18 1 1.6362 -7.9115 -4.0675
19 6 3.1188 -6.3295 -4.0039
20 7 4.1024 -7.2292 -3.3868
21 6 3.9785 -8.6061 -3.9298
22 6 5.3525 -9.2421 -3.6005
23 6 6.3375 -8.0716 -3.8229
24 6 5.4829 -6.7969 -3.6950
25 6 1.3099 -6.7115 -2.2681
26 6 1.1219 -4.8045 -0.0019
27 6 1.7950 -3.6345 0.2660
28 1 -0.4849 0.8402 -0.0004
29 1 -0.1901 -1.4946 -1.5010
30 1 -1.3590 -3.6045 -1.9647
31 1 -1.7909 -5.8766 -1.2479
32 1 -0.6072 -6.7655 -0.2596
33 1 -0.6953 -4.8615 -3.2380
34 1 -1.4278 -6.3143 -3.9757
35 1 1.0598 -5.0152 -4.7004
36 1 0.3462 -6.4915 -5.4150
37 1 3.3028 -6.2709 -5.0766
38 1 3.2097 -5.3359 -3.5649
39 1 3.1747 -9.1462 -3.4294
40 1 3.8144 -8.5815 -5.0072
41 1 5.5702 -10.0643 -4.2821
42 1 5.3849 -9.5822 -2.5654
43 1 6.7791 -8.1326 -4.8175
44 1 7.1177 -8.0819 -3.0619
45 1 5.4978 -6.2440 -4.6342
46 1 5.8643 -6.1699 -2.8891
47 1 1.6653 -7.5596 -1.6829
48 1 1.6949 -5.7754 -1.8638
49 1 1.4764 -5.7362 0.4137
50 1 2.6762 -3.6467 0.8903
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000343522993.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:52
Heat of formation + Delta-G solvation = 21.957357 kcal
Electronic energy + Delta-G solvation = -26841.749773 eV
Core-core repulsion = 23446.645431 eV
Total energy + Delta-G solvation = -3395.104343 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-39.60073 -38.55998 -36.97619 -34.15558 -33.10052 -31.29814 -29.62391 -29.34210
-28.93522 -28.14153 -26.43865 -24.65959 -23.32342 -21.52234 -21.09708 -20.89290
-20.46771 -19.54483 -19.37876 -17.29082 -16.35162 -16.03544 -15.43688 -15.21187
-14.94881 -14.62118 -14.03503 -13.83468 -13.78077 -13.65890 -13.22902 -12.98096
-12.61740 -12.53662 -12.40533 -12.04667 -11.91935 -11.61495 -11.49360 -11.34980
-11.21260 -11.14366 -11.08216 -10.90100 -10.76144 -10.70896 -10.68184 -10.56582
-10.45771 -10.25970 -10.07957 -9.72113 -9.37852 -9.18792 -8.36635 -7.79009
-7.45091 -7.24976 -6.72959 -4.37536 2.73597 3.03639 3.06551 3.09674
3.17019 3.92919 3.96525 4.49318 4.57493 4.61509 4.74376 4.82744
5.00772 5.06851 5.18914 5.24183 5.38253 5.44721 5.56553 5.64164
5.67060 5.69434 5.72010 5.75051 5.85877 5.90802 5.95946 6.01951
6.04529 6.06746 6.11446 6.15595 6.25146 6.32336 6.35323 6.45854
6.51625 6.61620 6.70634 6.91671 6.93095 7.07219 7.07592 7.23539
7.32293 7.45418 7.59991 7.60871 7.85033 8.04680 8.10111 8.29583
8.63496 8.89345 8.96127 10.21180
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.012815 B = 0.003770 C = 0.003203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2184.470665 B = 7424.997787 C = 8739.492782
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.800 5.800
2 C 0.074 3.926
3 Si 0.909 3.091
4 H -0.269 1.269
5 H -0.278 1.278
6 H -0.263 1.263
7 C -0.465 4.465
8 H 0.076 0.924
9 C 0.113 3.887
10 C -0.161 4.161
11 C -0.093 4.093
12 C -0.241 4.241
13 C 0.103 3.897
14 N -0.517 5.517
15 C 0.028 3.972
16 C -0.123 4.123
17 C -0.087 4.087
18 H 0.074 0.926
19 C 0.057 3.943
20 N -0.511 5.511
21 C 0.034 3.966
22 C -0.124 4.124
23 C -0.130 4.130
24 C 0.034 3.966
25 C 0.044 3.956
26 C -0.077 4.077
27 C -0.222 4.222
28 H 0.279 0.721
29 H 0.116 0.884
30 H 0.085 0.915
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.062 0.938
34 H 0.065 0.935
35 H 0.065 0.935
36 H 0.061 0.939
37 H 0.031 0.969
38 H 0.081 0.919
39 H 0.083 0.917
40 H 0.040 0.960
41 H 0.067 0.933
42 H 0.074 0.926
43 H 0.063 0.937
44 H 0.070 0.930
45 H 0.041 0.959
46 H 0.080 0.920
47 H 0.070 0.930
48 H 0.077 0.923
49 H 0.087 0.913
50 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.668 -12.210 -8.917 16.146
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.426 5.426
2 C -0.142 4.142
3 Si 0.733 3.267
4 H -0.194 1.194
5 H -0.203 1.203
6 H -0.187 1.187
7 C -0.495 4.495
8 H 0.094 0.906
9 C 0.111 3.889
10 C -0.180 4.180
11 C -0.112 4.112
12 C -0.243 4.243
13 C -0.025 4.025
14 N -0.240 5.240
15 C -0.100 4.100
16 C -0.161 4.161
17 C -0.107 4.107
18 H 0.092 0.908
19 C -0.071 4.071
20 N -0.235 5.235
21 C -0.094 4.094
22 C -0.162 4.162
23 C -0.169 4.169
24 C -0.094 4.094
25 C -0.083 4.083
26 C -0.096 4.096
27 C -0.242 4.242
28 H 0.090 0.910
29 H 0.134 0.866
30 H 0.103 0.897
31 H 0.080 0.920
32 H 0.084 0.916
33 H 0.080 0.920
34 H 0.083 0.917
35 H 0.084 0.916
36 H 0.080 0.920
37 H 0.049 0.951
38 H 0.099 0.901
39 H 0.101 0.899
40 H 0.059 0.941
41 H 0.086 0.914
42 H 0.093 0.907
43 H 0.081 0.919
44 H 0.089 0.911
45 H 0.060 0.940
46 H 0.098 0.902
47 H 0.089 0.911
48 H 0.095 0.905
49 H 0.105 0.895
50 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 5.121 -12.560 -8.363 15.935
hybrid contribution 0.734 1.792 -0.755 2.079
sum 5.855 -10.768 -9.118 15.276
Atomic orbital electron populations
1.69810 1.07444 1.28990 1.36324 1.25883 0.94783 1.01170 0.92394
0.86306 0.80434 0.80704 0.79224 1.19380 1.20318 1.18667 1.19596
0.96456 0.90776 1.42633 0.90605 1.17619 0.91249 0.91993 0.88079
1.21314 0.99018 0.96405 1.01311 1.20547 0.98297 0.92925 0.99472
1.19605 1.01381 0.94499 1.08850 1.20939 0.97280 0.92357 0.91884
1.65210 1.09238 1.47124 1.02390 1.22871 0.97308 0.98410 0.91390
1.22374 0.95768 0.99910 0.98094 1.22064 0.92535 0.99179 0.96878
0.90768 1.22351 0.91410 0.97206 0.96139 1.64765 1.02295 1.01814
1.54630 1.23235 0.97966 0.90539 0.97611 1.22477 0.94411 0.97168
1.02145 1.22385 0.98242 0.94625 1.01598 1.22866 0.89209 0.97112
1.00196 1.23314 0.87696 1.02553 0.94784 1.20373 0.95363 0.96263
0.97592 1.21012 1.03223 0.93358 1.06564 0.91001 0.86573 0.89731
0.91976 0.91647 0.92028 0.91683 0.91606 0.91985 0.95095 0.90098
0.89866 0.94128 0.91430 0.90718 0.91865 0.91090 0.94049 0.90185
0.91145 0.90515 0.89533 0.89132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -20.76 10.90 55.55 0.61 -20.16 16
2 C 0.07 1.87 5.22 -17.34 -0.09 1.78 16
3 Si 0.91 18.78 29.58 -169.99 -5.03 13.76 16
4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16
5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16
6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16
7 C -0.46 -12.33 9.06 -37.74 -0.34 -12.67 16
8 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16
9 C 0.11 2.99 5.55 -106.82 -0.59 2.39 16
10 C -0.16 -4.12 8.67 -38.87 -0.34 -4.46 16
11 C -0.09 -2.12 8.15 -39.66 -0.32 -2.45 16
12 C -0.24 -5.08 3.97 -104.33 -0.41 -5.50 16
13 C 0.10 1.85 5.69 -4.98 -0.03 1.83 16
14 N -0.52 -8.65 5.54 -231.90 -1.28 -9.93 16
15 C 0.03 0.45 6.46 -2.76 -0.02 0.43 16
16 C -0.12 -1.71 6.51 -25.38 -0.17 -1.88 16
17 C -0.09 -1.21 2.89 -88.76 -0.26 -1.47 16
18 H 0.07 0.99 6.60 -51.93 -0.34 0.65 16
19 C 0.06 0.77 4.16 -3.82 -0.02 0.76 16
20 N -0.51 -6.52 5.27 -230.44 -1.21 -7.74 16
21 C 0.03 0.37 5.36 -1.89 -0.01 0.36 16
22 C -0.12 -1.13 7.06 -24.87 -0.18 -1.31 16
23 C -0.13 -1.19 6.93 -25.37 -0.18 -1.37 16
24 C 0.03 0.39 6.70 -2.75 -0.02 0.37 16
25 C 0.04 0.72 5.42 -1.90 -0.01 0.71 16
26 C -0.08 -1.69 7.47 -39.66 -0.30 -1.99 16
27 C -0.22 -5.41 9.80 -38.87 -0.38 -5.79 16
28 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16
29 H 0.12 3.11 6.23 -52.49 -0.33 2.78 16
30 H 0.08 1.77 7.16 -52.49 -0.38 1.40 16
31 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16
32 H 0.07 1.14 8.08 -51.93 -0.42 0.73 16
33 H 0.06 1.08 4.84 -51.93 -0.25 0.83 16
34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
35 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16
36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
37 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 16
38 H 0.08 1.25 8.02 -51.93 -0.42 0.84 16
39 H 0.08 0.92 7.49 -51.93 -0.39 0.53 16
40 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16
41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
45 H 0.04 0.45 7.66 -51.93 -0.40 0.06 16
46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
47 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16
48 H 0.08 1.49 4.68 -51.93 -0.24 1.24 16
49 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16
50 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16
LS Contribution 377.71 15.07 5.69 5.69
Total: -1.00 -26.61 377.71 -13.47 -40.08
By element:
Atomic # 1 Polarization: 17.15 SS G_CDS: -8.59 Total: 8.56 kcal
Atomic # 6 Polarization: -26.61 SS G_CDS: -3.65 Total: -30.26 kcal
Atomic # 7 Polarization: -35.93 SS G_CDS: -1.89 Total: -37.83 kcal
Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -26.61 -13.47 -40.08 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343522993.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.038 kcal
(2) G-P(sol) polarization free energy of solvation -26.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.429 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.471 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.957 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds