Wall clock time and date at job start Tue Mar 31 2020 11:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00483 * 2 1 4 4 H 1.48503 * 109.46912 * 269.99575 * 3 2 1 5 5 H 1.48500 * 109.46934 * 29.99539 * 3 2 1 6 6 H 1.48500 * 109.47317 * 149.99545 * 3 2 1 7 7 C 1.39952 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00124 * 192.89189 * 7 2 1 9 9 C 1.41396 * 119.99986 * 12.89453 * 7 2 1 10 10 C 1.40720 * 120.24216 * 27.89476 * 9 7 2 11 11 C 1.37615 * 119.74346 * 179.97438 * 10 9 7 12 12 C 1.38636 * 120.24880 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.75276 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.47487 * 89.99567 * 13 12 11 15 15 C 1.47900 * 111.00241 * 290.13109 * 14 13 12 16 16 C 1.53990 * 107.05822 * 145.83889 * 15 14 13 17 17 C 1.54594 * 105.13964 * 358.77704 * 16 15 14 18 18 H 1.09002 * 110.72423 * 96.40227 * 17 16 15 19 19 C 1.53000 * 110.72489 * 219.50412 * 17 16 15 20 20 N 1.46899 * 109.47580 * 184.51488 * 19 17 16 21 21 C 1.48534 * 110.99578 * 58.15906 * 20 19 17 22 22 C 1.54947 * 103.22513 * 159.72212 * 21 20 19 23 23 C 1.54593 * 102.92198 * 322.58914 * 22 21 20 24 24 C 1.47902 * 111.00189 * 175.55755 * 20 19 17 25 25 C 1.48539 * 110.99441 * 47.52617 * 14 13 12 26 26 C 1.38635 * 120.50004 * 0.27282 * 12 11 10 27 27 C 1.37612 * 120.24994 * 359.44888 * 26 12 11 28 28 H 0.97006 * 119.99068 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.12785 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.87757 * 179.97438 * 11 10 9 31 31 H 1.09003 * 109.46854 * 330.00019 * 13 12 11 32 32 H 1.08994 * 109.47369 * 210.00254 * 13 12 11 33 33 H 1.09003 * 109.91744 * 26.48769 * 15 14 13 34 34 H 1.08998 * 109.91762 * 265.19875 * 15 14 13 35 35 H 1.09000 * 110.31374 * 239.85676 * 16 15 14 36 36 H 1.09003 * 110.39330 * 117.73490 * 16 15 14 37 37 H 1.09002 * 109.47302 * 304.51734 * 19 17 16 38 38 H 1.09002 * 109.47392 * 64.51475 * 19 17 16 39 39 H 1.09000 * 110.67155 * 278.15702 * 21 20 19 40 40 H 1.09001 * 110.66887 * 41.29311 * 21 20 19 41 41 H 1.08996 * 110.72396 * 204.22833 * 22 21 20 42 42 H 1.09003 * 110.87260 * 81.01840 * 22 21 20 43 43 H 1.08996 * 110.30837 * 263.04073 * 23 22 21 44 44 H 1.08995 * 110.39594 * 140.91430 * 23 22 21 45 45 H 1.08996 * 109.91866 * 333.50994 * 24 20 19 46 46 H 1.09002 * 109.91757 * 94.60801 * 24 20 19 47 47 H 1.08998 * 110.66697 * 81.84826 * 25 14 13 48 48 H 1.08994 * 110.66891 * 318.71185 * 25 14 13 49 49 H 1.08007 * 119.87713 * 179.70470 * 26 12 11 50 50 H 1.08000 * 120.13060 * 180.27384 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4900 2.0462 -1.4001 5 1 1.4398 2.6526 0.6999 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0675 -1.2239 0.2092 9 6 1.3276 -2.4212 -0.2722 10 6 0.1778 -2.4201 -1.0834 11 6 -0.4760 -3.6029 -1.3427 12 6 -0.0063 -4.7924 -0.8075 13 6 -0.7307 -6.0813 -1.0990 14 7 -0.1746 -6.6916 -2.3141 15 6 -0.5303 -5.9031 -3.5138 16 6 0.6563 -6.0056 -4.4899 17 6 1.7085 -6.8691 -3.7570 18 1 1.6362 -7.9115 -4.0675 19 6 3.1188 -6.3295 -4.0039 20 7 4.1024 -7.2292 -3.3868 21 6 3.9785 -8.6061 -3.9298 22 6 5.3525 -9.2421 -3.6005 23 6 6.3375 -8.0716 -3.8229 24 6 5.4829 -6.7969 -3.6950 25 6 1.3099 -6.7115 -2.2681 26 6 1.1219 -4.8045 -0.0019 27 6 1.7950 -3.6345 0.2660 28 1 -0.4849 0.8402 -0.0004 29 1 -0.1901 -1.4946 -1.5010 30 1 -1.3590 -3.6045 -1.9647 31 1 -1.7909 -5.8766 -1.2479 32 1 -0.6072 -6.7655 -0.2596 33 1 -0.6953 -4.8615 -3.2380 34 1 -1.4278 -6.3143 -3.9757 35 1 1.0598 -5.0152 -4.7004 36 1 0.3462 -6.4915 -5.4150 37 1 3.3028 -6.2709 -5.0766 38 1 3.2097 -5.3359 -3.5649 39 1 3.1747 -9.1462 -3.4294 40 1 3.8144 -8.5815 -5.0072 41 1 5.5702 -10.0643 -4.2821 42 1 5.3849 -9.5822 -2.5654 43 1 6.7791 -8.1326 -4.8175 44 1 7.1177 -8.0819 -3.0619 45 1 5.4978 -6.2440 -4.6342 46 1 5.8643 -6.1699 -2.8891 47 1 1.6653 -7.5596 -1.6829 48 1 1.6949 -5.7754 -1.8638 49 1 1.4764 -5.7362 0.4137 50 1 2.6762 -3.6467 0.8903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343522993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:51 Heat of formation + Delta-G solvation = 7.652139 kcal Electronic energy + Delta-G solvation = -26842.370094 eV Core-core repulsion = 23446.645431 eV Total energy + Delta-G solvation = -3395.724663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.89066 -39.75421 -38.55008 -35.81644 -34.50028 -32.59857 -31.43917 -30.87693 -29.91521 -29.33146 -28.05567 -26.09611 -24.70099 -23.00461 -22.54721 -21.99876 -21.66854 -21.09567 -20.53780 -19.21841 -17.44949 -17.19315 -16.92669 -16.54733 -16.16545 -16.07779 -15.62934 -15.44911 -15.11170 -14.84676 -14.56894 -14.26169 -13.94977 -13.87001 -13.73879 -13.48119 -13.40860 -13.19350 -12.85929 -12.66805 -12.48590 -12.47677 -12.28305 -12.15758 -12.14453 -12.03240 -11.96519 -11.78161 -11.61662 -11.54207 -11.40056 -11.32115 -11.20578 -11.05378 -9.37585 -9.31656 -9.21450 -9.13363 -8.61160 -6.36701 0.93020 1.12271 1.35316 1.47666 1.49060 2.19219 2.71247 3.01990 3.29357 3.69912 3.75850 3.78043 3.81779 3.89938 4.07345 4.15729 4.29506 4.33232 4.38077 4.39479 4.52031 4.53409 4.56573 4.63304 4.67564 4.75516 4.82087 4.86123 4.92196 4.94438 5.00129 5.00673 5.03725 5.05060 5.09103 5.14632 5.19656 5.24444 5.29305 5.33352 5.34467 5.44312 5.47039 5.69028 5.92505 6.00470 6.04302 6.09284 6.10396 6.20754 6.27296 6.38862 6.69410 6.93845 7.02105 8.34891 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003770 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.470665 B = 7424.997787 C = 8739.492782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.083 3.917 10 C -0.183 4.183 11 C -0.093 4.093 12 C -0.223 4.223 13 C 0.106 3.894 14 N -0.510 5.510 15 C 0.025 3.975 16 C -0.120 4.120 17 C -0.077 4.077 18 H 0.089 0.911 19 C 0.065 3.935 20 N -0.531 5.531 21 C 0.034 3.966 22 C -0.120 4.120 23 C -0.125 4.125 24 C 0.030 3.970 25 C 0.047 3.953 26 C -0.074 4.074 27 C -0.238 4.238 28 H 0.286 0.714 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.045 0.955 49 H 0.108 0.892 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 -14.059 -10.203 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.089 0.911 9 C 0.081 3.919 10 C -0.203 4.203 11 C -0.112 4.112 12 C -0.225 4.225 13 C -0.022 4.022 14 N -0.232 5.232 15 C -0.103 4.103 16 C -0.159 4.159 17 C -0.096 4.096 18 H 0.108 0.892 19 C -0.063 4.063 20 N -0.255 5.255 21 C -0.094 4.094 22 C -0.158 4.158 23 C -0.163 4.163 24 C -0.098 4.098 25 C -0.081 4.081 26 C -0.092 4.092 27 C -0.258 4.258 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.126 0.874 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.285 -14.432 -9.652 18.149 hybrid contribution 0.640 2.211 -0.373 2.332 sum 5.925 -12.221 -10.025 16.881 Atomic orbital electron populations 1.69870 1.08821 1.30243 1.36964 1.26708 0.95573 1.04318 0.91369 0.85214 0.78998 0.76077 0.79476 1.18685 1.19175 1.18370 1.19818 0.96507 0.92126 1.44965 0.91134 1.17918 0.92117 0.92883 0.89014 1.21247 0.99819 0.96794 1.02435 1.20749 0.98516 0.92581 0.99320 1.19972 1.00498 0.95472 1.06555 1.20973 0.97469 0.90696 0.93017 1.65245 1.09221 1.46619 1.02103 1.22960 0.98909 0.97057 0.91420 1.22379 0.94979 0.99711 0.98796 1.22004 0.92660 0.99998 0.94935 0.89233 1.22177 0.91638 0.95964 0.96568 1.64721 1.02691 1.02770 1.55312 1.23280 0.98916 0.89239 0.97937 1.22479 0.93279 0.97558 1.02457 1.22375 0.97980 0.93300 1.02691 1.22902 0.89021 0.98245 0.99671 1.23215 0.87476 1.00809 0.96562 1.20599 0.95189 0.96224 0.97214 1.21169 1.03744 0.93843 1.07049 0.90342 0.88494 0.88009 0.90906 0.90557 0.94229 0.89701 0.92706 0.89305 0.93875 0.93139 0.90122 0.93323 0.89322 0.91166 0.90362 0.90598 0.93900 0.91665 0.91089 0.93712 0.87411 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.69 10.90 21.83 0.24 -44.45 16 2 C 0.03 1.76 5.22 85.26 0.44 2.21 16 3 Si 0.98 39.34 29.58 68.60 2.03 41.37 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 7 C -0.50 -28.06 9.06 23.46 0.21 -27.85 16 8 H 0.07 3.83 7.88 -2.91 -0.02 3.80 16 9 C 0.08 4.59 5.55 -21.29 -0.12 4.47 16 10 C -0.18 -9.79 8.67 22.73 0.20 -9.59 16 11 C -0.09 -4.27 8.15 22.22 0.18 -4.09 16 12 C -0.22 -9.30 3.97 -19.67 -0.08 -9.38 16 13 C 0.11 3.62 5.69 85.56 0.49 4.11 16 14 N -0.51 -15.97 5.54 -887.58 -4.91 -20.88 16 15 C 0.02 0.72 6.46 86.45 0.56 1.28 16 16 C -0.12 -3.11 6.51 31.47 0.20 -2.91 16 17 C -0.08 -2.00 2.89 -9.59 -0.03 -2.03 16 18 H 0.09 2.11 6.60 -2.39 -0.02 2.10 16 19 C 0.07 1.72 4.16 86.30 0.36 2.08 16 20 N -0.53 -13.08 5.27 -882.98 -4.65 -17.73 16 21 C 0.03 0.65 5.36 86.65 0.46 1.11 16 22 C -0.12 -1.90 7.06 31.80 0.22 -1.67 16 23 C -0.13 -2.05 6.93 31.47 0.22 -1.84 16 24 C 0.03 0.65 6.70 86.45 0.58 1.23 16 25 C 0.05 1.49 5.42 86.65 0.47 1.96 16 26 C -0.07 -3.25 7.47 22.22 0.17 -3.08 16 27 C -0.24 -12.05 9.80 22.73 0.22 -11.83 16 28 H 0.29 13.91 8.30 -92.70 -0.77 13.15 16 29 H 0.10 5.47 6.23 -2.91 -0.02 5.46 16 30 H 0.10 4.26 7.16 -2.91 -0.02 4.24 16 31 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 32 H 0.08 2.47 8.08 -2.39 -0.02 2.45 16 33 H 0.04 1.35 4.84 -2.39 -0.01 1.34 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.54 7.85 -2.39 -0.02 1.53 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.02 7.97 -2.39 -0.02 1.00 16 38 H 0.05 1.62 8.02 -2.39 -0.02 1.60 16 39 H 0.08 1.59 7.49 -2.39 -0.02 1.57 16 40 H 0.05 0.87 8.02 -2.39 -0.02 0.85 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.04 0.91 7.66 -2.39 -0.02 0.89 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.04 1.73 4.68 -2.39 -0.01 1.72 16 49 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 50 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -59.37 377.71 -1.63 -61.01 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.90 Total: 36.51 kcal Atomic # 6 Polarization: -60.59 SS G_CDS: 4.77 Total: -55.82 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -9.33 Total: -83.06 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -59.37 -1.63 -61.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.658 kcal (2) G-P(sol) polarization free energy of solvation -59.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds