Wall clock time and date at job start Tue Mar 31 2020 10:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46964 * 2 1 4 4 C 1.42902 * 113.99848 * 179.97438 * 3 2 1 5 5 H 1.09005 * 112.84904 * 21.69638 * 4 3 2 6 6 C 1.53771 * 113.61911 * 250.49572 * 4 3 2 7 7 C 1.53779 * 87.08289 * 219.93453 * 6 4 3 8 8 O 1.42903 * 113.61090 * 139.98128 * 7 6 4 9 9 C 1.52998 * 113.61499 * 270.79559 * 7 6 4 10 10 N 1.46504 * 109.47125 * 284.13979 * 9 7 6 11 11 C 1.34782 * 119.99607 * 179.97438 * 10 9 7 12 12 O 1.21583 * 120.00044 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99772 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99855 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46909 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.46832 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00256 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99695 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00106 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99937 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46981 * 59.99554 * 20 18 16 22 22 H 1.48490 * 109.47141 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46821 * 299.99946 * 20 18 16 24 24 C 1.53778 * 113.69025 * 152.95596 * 4 3 2 25 25 C 1.53007 * 113.61494 * 25.44986 * 24 4 3 26 26 C 1.52994 * 113.61755 * 254.54188 * 24 4 3 27 27 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47333 * 300.00505 * 1 2 3 29 29 H 1.09007 * 109.46947 * 59.99794 * 1 2 3 30 30 H 1.08996 * 109.46924 * 240.00150 * 2 1 3 31 31 H 1.08994 * 109.46755 * 119.99948 * 2 1 3 32 32 H 1.08999 * 113.61793 * 105.38417 * 6 4 3 33 33 H 1.09006 * 113.61409 * 334.48805 * 6 4 3 34 34 H 0.96700 * 114.00311 * 79.50641 * 8 7 6 35 35 H 1.08996 * 109.46910 * 44.13766 * 9 7 6 36 36 H 1.08999 * 109.47017 * 164.13506 * 9 7 6 37 37 H 0.96995 * 120.00176 * 359.97438 * 10 9 7 38 38 H 0.97003 * 119.99821 * 0.02562 * 13 11 10 39 39 H 1.09006 * 109.47191 * 300.00000 * 14 13 11 40 40 H 1.08999 * 109.47352 * 60.00197 * 14 13 11 41 41 H 1.08997 * 109.47035 * 299.99282 * 15 14 13 42 42 H 1.08999 * 109.47118 * 59.99850 * 15 14 13 43 43 H 0.97006 * 120.00046 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.47011 * 157.49418 * 25 24 4 45 45 H 1.08995 * 109.46823 * 277.49164 * 25 24 4 46 46 H 1.09000 * 109.46933 * 37.49461 * 25 24 4 47 47 H 1.08995 * 109.47588 * 322.50666 * 26 24 4 48 48 H 1.09008 * 109.47035 * 82.50797 * 26 24 4 49 49 H 1.09008 * 109.47343 * 202.50107 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9267 0.5630 -0.3704 6 6 4.0073 1.9779 1.3288 7 6 4.9930 2.8060 0.4876 8 8 5.2216 4.1194 1.0021 9 6 6.2892 2.0640 0.1556 10 7 7.1504 2.0315 1.3404 11 6 8.3527 1.4249 1.2830 12 8 8.7222 0.9043 0.2483 13 7 9.1452 1.3955 2.3727 14 6 10.4521 0.7366 2.3103 15 6 11.1433 0.8448 3.6710 16 6 12.4880 0.1676 3.6066 17 1 12.8166 -0.2942 2.6872 18 6 13.2984 0.1367 4.7217 19 7 12.8981 0.6986 5.8413 20 14 14.9650 -0.7034 4.6421 21 1 15.8026 -0.0444 3.6079 22 1 15.6359 -0.5983 5.9626 23 1 14.7815 -2.1348 4.2921 24 6 3.9481 2.7591 -0.6397 25 6 2.9411 3.9100 -0.5901 26 6 4.5548 2.5580 -2.0297 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.4874 1.2040 1.9277 33 1 3.3061 2.5842 1.9023 34 1 5.8436 4.1493 1.7419 35 1 6.0558 1.0447 -0.1519 36 1 6.8052 2.5789 -0.6547 37 1 6.8555 2.4466 2.1659 38 1 8.8502 1.8105 3.1983 39 1 10.3174 -0.3143 2.0542 40 1 11.0667 1.2198 1.5507 41 1 11.2781 1.8956 3.9275 42 1 10.5286 0.3614 4.4303 43 1 13.4684 0.6771 6.6257 44 1 3.4698 4.8593 -0.6759 45 1 2.2356 3.8112 -1.4151 46 1 2.4005 3.8794 0.3559 47 1 5.1023 1.6159 -2.0544 48 1 3.7586 2.5352 -2.7739 49 1 5.2357 3.3799 -2.2513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352522215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:17 Heat of formation + Delta-G solvation = -119.926417 kcal Electronic energy + Delta-G solvation = -26783.847754 eV Core-core repulsion = 22939.448855 eV Total energy + Delta-G solvation = -3844.398899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26003 -39.46133 -37.64777 -35.35447 -34.98684 -34.12447 -32.82824 -31.48324 -30.74138 -29.71770 -28.20637 -26.64250 -24.59508 -23.53342 -22.93477 -22.60762 -21.06650 -20.65314 -18.84255 -18.53243 -17.26174 -16.47989 -16.35365 -16.20398 -15.73376 -15.56037 -15.40790 -14.73749 -14.51551 -14.32918 -14.23218 -13.87901 -13.56190 -13.41020 -13.17908 -12.98501 -12.76281 -12.65459 -12.48723 -12.29919 -12.27620 -12.13854 -11.78646 -11.57680 -11.21558 -11.20977 -11.02971 -10.87978 -10.68216 -10.64277 -10.33756 -10.06542 -10.00689 -9.66713 -9.58217 -9.29655 -9.14602 -8.50768 -8.29960 -6.10366 -4.13149 2.85898 3.21938 3.30676 3.34504 3.38050 3.50684 3.82726 3.99922 4.16608 4.23632 4.34931 4.41718 4.64878 4.68838 4.71756 4.87874 4.92845 5.02086 5.07091 5.23802 5.26688 5.33543 5.42287 5.47340 5.50744 5.52404 5.54912 5.67093 5.70157 5.76949 5.79923 5.82964 6.05743 6.21601 6.24608 6.36752 6.43501 6.74565 6.92379 6.94309 7.10512 7.30662 7.53873 7.61081 7.88367 8.22716 8.35898 8.88636 8.94193 9.51590 11.01189 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.002155 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.714594 B =12988.974009 C =13334.504671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.072 3.928 5 H 0.091 0.909 6 C -0.181 4.181 7 C 0.102 3.898 8 O -0.537 6.537 9 C 0.134 3.866 10 N -0.754 5.754 11 C 0.700 3.300 12 O -0.595 6.595 13 N -0.737 5.737 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.054 4.054 25 C -0.108 4.108 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.375 0.625 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.391 0.609 38 H 0.393 0.607 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.263 0.737 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.114 3.881 -10.612 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.285 6.285 4 C 0.013 3.987 5 H 0.109 0.891 6 C -0.219 4.219 7 C 0.061 3.939 8 O -0.343 6.343 9 C 0.009 3.991 10 N -0.413 5.413 11 C 0.400 3.600 12 O -0.474 6.474 13 N -0.391 5.391 14 C 0.017 3.983 15 C -0.024 4.024 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.055 4.055 25 C -0.165 4.165 26 C -0.203 4.203 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.223 0.777 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.224 0.776 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.223 3.725 -11.868 28.124 hybrid contribution 1.261 -0.519 1.402 1.956 sum -23.963 3.206 -10.466 26.344 Atomic orbital electron populations 1.21738 0.93746 1.02236 1.03075 1.22528 0.95596 0.84005 1.00157 1.87938 1.19912 1.26090 1.94543 1.23589 0.81640 0.97307 0.96131 0.89141 1.24210 0.99161 1.00507 0.97976 1.22615 0.92234 0.83270 0.95826 1.86568 1.67556 1.26671 1.53499 1.21489 0.88720 1.00622 0.88272 1.45022 1.18563 1.63051 1.14615 1.16007 0.79992 0.79423 0.84593 1.90898 1.74465 1.51726 1.30283 1.45539 1.20230 1.61103 1.12180 1.21613 0.79713 0.95711 1.01271 1.19320 0.95297 0.97908 0.89889 1.21010 1.01346 1.36243 0.97452 0.92263 1.24999 0.98532 0.95447 0.95331 1.69944 1.37573 1.44267 1.01540 0.86561 0.83646 0.80092 0.77170 1.20096 1.21258 1.20108 1.22188 0.93960 0.95625 0.93692 1.21224 0.96953 0.96123 1.02233 1.21865 1.01034 1.02417 0.94971 0.91159 0.91872 0.91889 0.93321 0.93338 0.90573 0.88069 0.77687 0.90742 0.90353 0.77591 0.77371 0.92761 0.92710 0.95950 0.95989 0.92792 0.91877 0.92437 0.92036 0.91992 0.91830 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.39 6.51 37.16 0.24 0.63 16 3 O -0.37 -3.38 9.45 -35.23 -0.33 -3.71 16 4 C 0.07 0.62 3.35 -25.93 -0.09 0.53 16 5 H 0.09 0.74 7.18 -51.93 -0.37 0.37 16 6 C -0.18 -1.55 6.98 -25.92 -0.18 -1.73 16 7 C 0.10 0.92 1.31 -89.81 -0.12 0.81 16 8 O -0.54 -5.02 12.48 -35.23 -0.44 -5.45 16 9 C 0.13 1.46 3.93 -4.04 -0.02 1.44 16 10 N -0.75 -8.87 5.35 -65.22 -0.35 -9.22 16 11 C 0.70 11.83 8.57 -86.91 -0.74 11.08 16 12 O -0.60 -12.55 16.34 5.29 0.09 -12.46 16 13 N -0.74 -12.63 5.56 -65.23 -0.36 -13.00 16 14 C 0.14 2.96 5.61 -4.04 -0.02 2.94 16 15 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 20 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.05 -0.48 1.30 -153.70 -0.20 -0.68 16 25 C -0.11 -0.98 7.92 37.16 0.29 -0.69 16 26 C -0.15 -1.21 8.13 37.15 0.30 -0.91 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.65 8.10 -51.93 -0.42 0.22 16 33 H 0.10 0.91 7.65 -51.93 -0.40 0.51 16 34 H 0.38 2.54 7.74 45.56 0.35 2.89 16 35 H 0.07 0.84 6.95 -51.93 -0.36 0.48 16 36 H 0.08 0.96 7.72 -51.93 -0.40 0.56 16 37 H 0.39 3.42 7.43 -40.82 -0.30 3.11 16 38 H 0.39 5.70 8.49 -40.82 -0.35 5.35 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.06 0.60 7.84 -51.93 -0.41 0.19 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.59 7.19 -51.93 -0.37 0.22 16 47 H 0.06 0.50 6.99 -51.93 -0.36 0.14 16 48 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 49 H 0.07 0.57 8.13 -51.92 -0.42 0.15 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -33.00 393.88 -8.45 -41.45 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.01 Total: 5.48 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.70 Total: -0.07 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.02 Total: -47.46 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.69 Total: -21.63 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.00 -8.45 -41.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352522215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.477 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds