Wall clock time and date at job start Tue Mar 31 2020 10:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46878 * 2 1 4 4 C 1.42906 * 113.99943 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.90320 * 18.74860 * 4 3 2 6 6 C 1.53947 * 113.61234 * 247.42429 * 4 3 2 7 7 C 1.53783 * 87.11056 * 270.84120 * 6 4 3 8 8 O 1.42906 * 113.61511 * 220.09412 * 7 6 4 9 9 C 1.52995 * 113.61409 * 89.18776 * 7 6 4 10 10 N 1.46501 * 109.46966 * 82.50449 * 9 7 6 11 11 C 1.34778 * 120.00081 * 179.97438 * 10 9 7 12 12 O 1.21598 * 119.99524 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00298 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00180 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47304 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47089 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99895 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99904 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00330 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47345 * 89.99353 * 20 18 16 22 22 H 1.48500 * 109.47304 * 209.99642 * 20 18 16 23 23 H 1.48504 * 109.46698 * 329.99629 * 20 18 16 24 24 C 1.53781 * 113.61439 * 149.99513 * 4 3 2 25 25 C 1.52997 * 113.61512 * 334.57115 * 24 4 3 26 26 C 1.52999 * 113.61163 * 203.74916 * 24 4 3 27 27 H 1.09001 * 109.47413 * 299.99897 * 1 2 3 28 28 H 1.08998 * 109.47405 * 60.00012 * 1 2 3 29 29 H 1.09000 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47413 * 240.00103 * 2 1 3 31 31 H 1.09002 * 109.47272 * 119.99497 * 2 1 3 32 32 H 1.09000 * 113.53652 * 156.29011 * 6 4 3 33 33 H 1.08995 * 113.67104 * 25.41115 * 6 4 3 34 34 H 0.96699 * 113.99687 * 277.49230 * 8 7 6 35 35 H 1.09008 * 109.47059 * 202.50418 * 9 7 6 36 36 H 1.08997 * 109.47053 * 322.50480 * 9 7 6 37 37 H 0.96999 * 119.99978 * 0.02562 * 10 9 7 38 38 H 0.97000 * 119.99784 * 359.97438 * 13 11 10 39 39 H 1.08998 * 109.46989 * 300.00136 * 14 13 11 40 40 H 1.09004 * 109.46990 * 59.99386 * 14 13 11 41 41 H 1.09005 * 109.46929 * 300.00083 * 15 14 13 42 42 H 1.09001 * 109.46770 * 59.99799 * 15 14 13 43 43 H 0.97004 * 120.00169 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47153 * 279.13255 * 25 24 4 45 45 H 1.09001 * 109.46832 * 159.13446 * 25 24 4 46 46 H 1.09004 * 109.47261 * 39.13427 * 25 24 4 47 47 H 1.09003 * 109.46687 * 200.87007 * 26 24 4 48 48 H 1.08993 * 109.47313 * 320.85949 * 26 24 4 49 49 H 1.08992 * 109.47161 * 80.87337 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9287 0.5459 -0.3237 6 6 4.0033 2.0486 1.3018 7 6 3.8414 3.4345 0.6552 8 8 4.9281 4.3225 0.9248 9 6 2.4740 4.0727 0.9080 10 7 2.4726 4.7196 2.2224 11 6 1.3661 5.3518 2.6612 12 8 0.3692 5.3856 1.9657 13 7 1.3648 5.9473 3.8701 14 6 0.1619 6.6340 4.3472 15 6 0.4252 7.2182 5.7366 16 6 -0.8124 7.9240 6.2276 17 1 -1.6980 7.9534 5.6103 18 6 -0.8137 8.5332 7.4644 19 7 0.2650 8.4979 8.2159 20 14 -2.3475 9.4088 8.0729 21 1 -3.2012 8.4504 8.8198 22 1 -1.9568 10.5264 8.9692 23 1 -3.1038 9.9456 6.9131 24 6 3.9482 2.7254 -0.7052 25 6 2.9868 3.2758 -1.7605 26 6 5.3838 2.5973 -1.2185 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0413 1.7711 1.4854 33 1 3.3629 1.8944 2.1702 34 1 4.8665 4.7715 1.7790 35 1 2.2719 4.8162 0.1369 36 1 1.7031 3.3026 0.8812 37 1 3.2682 4.6935 2.7767 38 1 2.1602 5.9206 4.4247 39 1 -0.0953 7.4378 3.6575 40 1 -0.6638 5.9245 4.4023 41 1 0.6822 6.4140 6.4261 42 1 1.2510 7.9276 5.6818 43 1 0.2641 8.9261 9.0863 44 1 3.0996 2.7099 -2.6852 45 1 3.2142 4.3255 -1.9468 46 1 1.9618 3.1843 -1.4011 47 1 5.8091 3.5909 -1.3601 48 1 5.9816 2.0465 -0.4923 49 1 5.3837 2.0635 -2.1688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352522217.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:22 Heat of formation + Delta-G solvation = -115.882101 kcal Electronic energy + Delta-G solvation = -27235.305035 eV Core-core repulsion = 23391.081511 eV Total energy + Delta-G solvation = -3844.223524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25481 -39.35348 -37.51353 -35.33863 -34.88561 -33.97028 -32.78117 -31.45438 -30.53421 -29.74193 -28.29618 -26.49955 -24.57102 -23.44423 -22.87918 -22.54123 -20.99753 -20.56185 -18.81795 -18.44203 -17.39496 -16.40157 -16.23023 -16.11937 -15.63331 -15.60022 -15.24181 -14.77969 -14.47852 -14.21053 -14.09635 -13.68262 -13.48842 -13.40442 -13.14068 -12.84776 -12.68581 -12.58579 -12.34316 -12.30983 -12.25655 -12.12201 -11.80515 -11.39568 -11.20742 -11.16848 -11.01808 -10.95619 -10.61788 -10.43695 -10.29617 -9.92962 -9.90815 -9.69708 -9.53507 -9.24349 -8.98100 -8.46658 -8.22082 -6.07749 -4.10184 2.96906 3.18190 3.30926 3.36987 3.41799 3.62197 3.79461 4.09893 4.22626 4.33382 4.42921 4.46513 4.74833 4.78695 4.80048 4.91531 5.03648 5.08035 5.12140 5.29451 5.30927 5.33498 5.46035 5.51927 5.60942 5.63608 5.66358 5.69099 5.75812 5.86614 5.91463 5.93821 6.14336 6.19992 6.32230 6.42606 6.57593 6.80215 6.95076 7.02704 7.20333 7.37321 7.58614 7.65384 7.91696 8.27696 8.44796 8.94808 9.02784 9.54503 11.03975 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.002476 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.651463 B =11304.113974 C =12057.243587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.081 0.919 6 C -0.183 4.183 7 C 0.108 3.892 8 O -0.544 6.544 9 C 0.132 3.868 10 N -0.754 5.754 11 C 0.700 3.300 12 O -0.594 6.594 13 N -0.739 5.739 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.061 4.061 25 C -0.141 4.141 26 C -0.118 4.118 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.373 0.627 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.387 0.613 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.594 -18.107 -18.095 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.013 3.987 5 H 0.099 0.901 6 C -0.221 4.221 7 C 0.066 3.934 8 O -0.350 6.350 9 C 0.007 3.993 10 N -0.412 5.412 11 C 0.400 3.600 12 O -0.472 6.472 13 N -0.392 5.392 14 C 0.018 3.982 15 C -0.024 4.024 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.061 4.061 25 C -0.198 4.198 26 C -0.175 4.175 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.221 0.779 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.220 0.780 38 H 0.225 0.775 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.755 -18.042 -19.159 28.430 hybrid contribution 0.011 0.414 1.655 1.706 sum 10.766 -17.628 -17.504 27.074 Atomic orbital electron populations 1.21756 0.93473 1.02237 1.03611 1.22542 0.95787 0.83606 0.99898 1.87921 1.19041 1.26379 1.94354 1.22942 0.82104 0.97512 0.96093 0.90140 1.24228 1.02229 0.96957 0.98690 1.22867 0.86186 0.87707 0.96603 1.86551 1.45343 1.61239 1.41866 1.21565 0.96019 0.97635 0.84068 1.45037 1.14971 1.60747 1.20479 1.15995 0.83078 0.78651 0.82267 1.90900 1.33093 1.65917 1.57312 1.45524 1.18102 1.58378 1.17220 1.21588 0.84315 0.94741 0.97603 1.19323 0.97988 0.96075 0.89045 1.21058 0.98391 1.34337 1.02090 0.92212 1.24995 0.96379 0.96248 0.96700 1.69957 1.27818 1.44478 1.11159 0.86510 0.83007 0.79254 0.78773 1.20574 1.21190 1.19706 1.22207 0.96993 0.93524 0.93417 1.21706 0.99876 1.00761 0.97442 1.21420 0.92952 1.02914 1.00251 0.91518 0.91703 0.91156 0.93382 0.93388 0.88402 0.90106 0.77874 0.90976 0.88680 0.77977 0.77488 0.92778 0.92815 0.96012 0.95971 0.92879 0.92443 0.92205 0.90662 0.91024 0.92329 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.15 0.38 -0.82 16 2 C 0.06 0.45 6.50 37.15 0.24 0.69 16 3 O -0.36 -3.55 6.82 -35.23 -0.24 -3.79 16 4 C 0.07 0.61 3.81 -25.83 -0.10 0.51 16 5 H 0.08 0.55 7.83 -51.93 -0.41 0.14 16 6 C -0.18 -1.57 6.98 -25.83 -0.18 -1.75 16 7 C 0.11 1.05 1.42 -89.81 -0.13 0.93 16 8 O -0.54 -5.30 12.53 -35.23 -0.44 -5.74 16 9 C 0.13 1.65 3.93 -4.04 -0.02 1.64 16 10 N -0.75 -9.84 5.34 -65.22 -0.35 -10.19 16 11 C 0.70 12.61 8.57 -86.92 -0.74 11.86 16 12 O -0.59 -13.22 16.34 5.28 0.09 -13.13 16 13 N -0.74 -13.25 5.56 -65.22 -0.36 -13.61 16 14 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 15 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 16 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.06 -0.54 1.31 -153.69 -0.20 -0.74 16 25 C -0.14 -1.31 7.84 37.16 0.29 -1.02 16 26 C -0.12 -0.90 8.50 37.16 0.32 -0.58 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.73 7.64 -51.93 -0.40 0.33 16 33 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.37 2.78 7.30 45.56 0.33 3.11 16 35 H 0.07 1.02 7.36 -51.92 -0.38 0.64 16 36 H 0.10 1.36 5.94 -51.93 -0.31 1.05 16 37 H 0.39 3.79 7.05 -40.82 -0.29 3.51 16 38 H 0.39 5.97 8.49 -40.82 -0.35 5.63 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 46 H 0.07 0.81 6.12 -51.93 -0.32 0.49 16 47 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 48 H 0.06 0.41 7.34 -51.93 -0.38 0.03 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 389.89 15.07 5.88 5.88 Total: -1.00 -33.50 389.89 -8.36 -41.86 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.94 Total: 7.12 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.71 Total: 0.63 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.03 Total: -49.35 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.60 Total: -22.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.50 -8.36 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352522217.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.020 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds