Wall clock time and date at job start Tue Mar 31 2020 10:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46878 * 2 1 4 4 C 1.42906 * 113.99943 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.90320 * 18.74860 * 4 3 2 6 6 C 1.53947 * 113.61234 * 247.42429 * 4 3 2 7 7 C 1.53783 * 87.11056 * 270.84120 * 6 4 3 8 8 O 1.42906 * 113.61511 * 220.09412 * 7 6 4 9 9 C 1.52995 * 113.61409 * 89.18776 * 7 6 4 10 10 N 1.46501 * 109.46966 * 82.50449 * 9 7 6 11 11 C 1.34778 * 120.00081 * 179.97438 * 10 9 7 12 12 O 1.21598 * 119.99524 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00298 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00180 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47304 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47089 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99895 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99904 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00330 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47345 * 89.99353 * 20 18 16 22 22 H 1.48500 * 109.47304 * 209.99642 * 20 18 16 23 23 H 1.48504 * 109.46698 * 329.99629 * 20 18 16 24 24 C 1.53781 * 113.61439 * 149.99513 * 4 3 2 25 25 C 1.52997 * 113.61512 * 334.57115 * 24 4 3 26 26 C 1.52999 * 113.61163 * 203.74916 * 24 4 3 27 27 H 1.09001 * 109.47413 * 299.99897 * 1 2 3 28 28 H 1.08998 * 109.47405 * 60.00012 * 1 2 3 29 29 H 1.09000 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47413 * 240.00103 * 2 1 3 31 31 H 1.09002 * 109.47272 * 119.99497 * 2 1 3 32 32 H 1.09000 * 113.53652 * 156.29011 * 6 4 3 33 33 H 1.08995 * 113.67104 * 25.41115 * 6 4 3 34 34 H 0.96699 * 113.99687 * 277.49230 * 8 7 6 35 35 H 1.09008 * 109.47059 * 202.50418 * 9 7 6 36 36 H 1.08997 * 109.47053 * 322.50480 * 9 7 6 37 37 H 0.96999 * 119.99978 * 0.02562 * 10 9 7 38 38 H 0.97000 * 119.99784 * 359.97438 * 13 11 10 39 39 H 1.08998 * 109.46989 * 300.00136 * 14 13 11 40 40 H 1.09004 * 109.46990 * 59.99386 * 14 13 11 41 41 H 1.09005 * 109.46929 * 300.00083 * 15 14 13 42 42 H 1.09001 * 109.46770 * 59.99799 * 15 14 13 43 43 H 0.97004 * 120.00169 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47153 * 279.13255 * 25 24 4 45 45 H 1.09001 * 109.46832 * 159.13446 * 25 24 4 46 46 H 1.09004 * 109.47261 * 39.13427 * 25 24 4 47 47 H 1.09003 * 109.46687 * 200.87007 * 26 24 4 48 48 H 1.08993 * 109.47313 * 320.85949 * 26 24 4 49 49 H 1.08992 * 109.47161 * 80.87337 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9287 0.5459 -0.3237 6 6 4.0033 2.0486 1.3018 7 6 3.8414 3.4345 0.6552 8 8 4.9281 4.3225 0.9248 9 6 2.4740 4.0727 0.9080 10 7 2.4726 4.7196 2.2224 11 6 1.3661 5.3518 2.6612 12 8 0.3692 5.3856 1.9657 13 7 1.3648 5.9473 3.8701 14 6 0.1619 6.6340 4.3472 15 6 0.4252 7.2182 5.7366 16 6 -0.8124 7.9240 6.2276 17 1 -1.6980 7.9534 5.6103 18 6 -0.8137 8.5332 7.4644 19 7 0.2650 8.4979 8.2159 20 14 -2.3475 9.4088 8.0729 21 1 -3.2012 8.4504 8.8198 22 1 -1.9568 10.5264 8.9692 23 1 -3.1038 9.9456 6.9131 24 6 3.9482 2.7254 -0.7052 25 6 2.9868 3.2758 -1.7605 26 6 5.3838 2.5973 -1.2185 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0413 1.7711 1.4854 33 1 3.3629 1.8944 2.1702 34 1 4.8665 4.7715 1.7790 35 1 2.2719 4.8162 0.1369 36 1 1.7031 3.3026 0.8812 37 1 3.2682 4.6935 2.7767 38 1 2.1602 5.9206 4.4247 39 1 -0.0953 7.4378 3.6575 40 1 -0.6638 5.9245 4.4023 41 1 0.6822 6.4140 6.4261 42 1 1.2510 7.9276 5.6818 43 1 0.2641 8.9261 9.0863 44 1 3.0996 2.7099 -2.6852 45 1 3.2142 4.3255 -1.9468 46 1 1.9618 3.1843 -1.4011 47 1 5.8091 3.5909 -1.3601 48 1 5.9816 2.0465 -0.4923 49 1 5.3837 2.0635 -2.1688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352522217.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:21 Heat of formation + Delta-G solvation = -141.055749 kcal Electronic energy + Delta-G solvation = -27236.396646 eV Core-core repulsion = 23391.081511 eV Total energy + Delta-G solvation = -3845.315135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05374 -40.77198 -38.25369 -36.68799 -36.06939 -35.24622 -34.77931 -32.09904 -31.66422 -31.11941 -29.30754 -27.46916 -26.37840 -24.15716 -23.66980 -23.34836 -22.79856 -22.01507 -19.94325 -19.37949 -18.44904 -18.24988 -17.26542 -17.00806 -16.78827 -16.53708 -16.47379 -16.27649 -15.80101 -15.34679 -15.12756 -15.05782 -14.69075 -14.42936 -14.27885 -14.12752 -13.60348 -13.48704 -13.25509 -13.21281 -13.09773 -12.98646 -12.93592 -12.83292 -12.52767 -12.48227 -12.23771 -12.07137 -11.87956 -11.70384 -11.64815 -11.53446 -11.31155 -11.06522 -10.69695 -10.60319 -10.37669 -10.33565 -9.75450 -8.23913 -6.34002 1.41999 1.42654 1.53836 1.66479 2.13282 2.41382 2.55721 3.07237 3.10991 3.23705 3.36960 3.58418 3.64939 3.70104 4.19459 4.19714 4.25361 4.39490 4.42656 4.47739 4.50111 4.52001 4.52990 4.71450 4.75805 4.81505 4.84124 4.86464 4.90985 4.98802 5.00719 5.04261 5.09607 5.20171 5.27685 5.29818 5.35696 5.48278 5.49944 5.51182 5.59746 5.78524 5.96666 6.17464 6.34532 6.67512 6.79031 7.08284 7.35252 7.56227 8.88052 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.002476 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.651463 B =11304.113974 C =12057.243587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.382 6.382 4 C 0.073 3.927 5 H 0.104 0.896 6 C -0.174 4.174 7 C 0.108 3.892 8 O -0.549 6.549 9 C 0.137 3.863 10 N -0.731 5.731 11 C 0.699 3.301 12 O -0.638 6.638 13 N -0.731 5.731 14 C 0.160 3.840 15 C 0.025 3.975 16 C -0.547 4.547 17 H 0.058 0.942 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.267 1.267 24 C -0.062 4.062 25 C -0.139 4.139 26 C -0.113 4.113 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.382 0.618 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.406 0.594 38 H 0.408 0.592 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.633 -19.239 -18.410 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.301 6.301 4 C 0.014 3.986 5 H 0.122 0.878 6 C -0.212 4.212 7 C 0.066 3.934 8 O -0.356 6.356 9 C 0.012 3.988 10 N -0.389 5.389 11 C 0.399 3.601 12 O -0.519 6.519 13 N -0.386 5.386 14 C 0.036 3.964 15 C -0.012 4.012 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.063 4.063 25 C -0.196 4.196 26 C -0.170 4.170 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.231 0.769 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.243 0.757 38 H 0.243 0.757 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.860 -19.197 -19.466 29.801 hybrid contribution -0.284 0.749 1.721 1.898 sum 11.576 -18.447 -17.745 28.093 Atomic orbital electron populations 1.21773 0.94002 1.03128 1.02144 1.22676 0.95433 0.82973 1.01122 1.87911 1.20030 1.27720 1.94455 1.23027 0.81657 0.98179 0.95696 0.87828 1.24207 1.03091 0.95588 0.98339 1.22812 0.84382 0.88105 0.98070 1.86551 1.44926 1.61454 1.42690 1.21540 0.97818 0.96621 0.82803 1.44783 1.14224 1.59075 1.20838 1.16103 0.83583 0.78662 0.81731 1.90873 1.35135 1.67504 1.58433 1.45182 1.17595 1.58146 1.17635 1.21081 0.85420 0.94204 0.95690 1.19119 0.96661 0.95169 0.90294 1.21464 0.99339 1.35039 1.02674 0.92371 1.25857 0.99580 0.96874 0.96806 1.70055 1.29743 1.45191 1.11606 0.85451 0.79125 0.78199 0.78313 1.19727 1.20452 1.19139 1.22298 0.97785 0.93573 0.92612 1.21661 0.99000 1.00556 0.98366 1.21397 0.91726 1.02637 1.01276 0.93663 0.92430 0.89106 0.91525 0.92635 0.86560 0.91102 0.76853 0.92866 0.90236 0.75708 0.75696 0.93925 0.93919 0.97224 0.97202 0.92525 0.90969 0.93100 0.92567 0.92146 0.91353 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 10.28 71.98 0.74 -1.61 16 2 C 0.05 0.77 6.50 71.98 0.47 1.23 16 3 O -0.38 -7.27 6.82 -148.98 -1.02 -8.29 16 4 C 0.07 1.08 3.81 31.18 0.12 1.20 16 5 H 0.10 1.07 7.83 -2.38 -0.02 1.05 16 6 C -0.17 -2.62 6.98 31.18 0.22 -2.41 16 7 C 0.11 1.98 1.42 -10.27 -0.01 1.96 16 8 O -0.55 -9.74 12.53 -148.98 -1.87 -11.60 16 9 C 0.14 3.45 3.93 86.38 0.34 3.79 16 10 N -0.73 -18.78 5.34 -478.53 -2.56 -21.33 16 11 C 0.70 25.32 8.57 179.06 1.53 26.86 16 12 O -0.64 -29.09 16.34 -4.02 -0.07 -29.16 16 13 N -0.73 -26.22 5.56 -478.52 -2.66 -28.88 16 14 C 0.16 7.14 5.61 86.38 0.48 7.62 16 15 C 0.03 1.28 5.09 29.85 0.15 1.43 16 16 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 18 C 0.01 0.43 5.46 84.65 0.46 0.89 16 19 N -0.93 -54.44 13.29 21.45 0.28 -54.16 16 20 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C -0.06 -1.00 1.31 -51.65 -0.07 -1.07 16 25 C -0.14 -2.53 7.84 71.98 0.56 -1.96 16 26 C -0.11 -1.44 8.50 71.98 0.61 -0.83 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.12 1.35 7.64 -2.39 -0.02 1.34 16 33 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.38 4.97 7.30 -74.06 -0.54 4.43 16 35 H 0.05 1.56 7.36 -2.38 -0.02 1.54 16 36 H 0.08 2.33 5.94 -2.39 -0.01 2.31 16 37 H 0.41 7.40 7.05 -92.71 -0.65 6.75 16 38 H 0.41 12.14 8.49 -92.71 -0.79 11.35 16 39 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 0.99 8.11 -2.39 -0.02 0.97 16 46 H 0.06 1.24 6.12 -2.38 -0.01 1.22 16 47 H 0.06 0.92 7.90 -2.39 -0.02 0.90 16 48 H 0.07 0.74 7.34 -2.39 -0.02 0.73 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -72.37 389.89 -1.04 -73.41 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -1.02 Total: 27.60 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.84 Total: 6.46 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -4.93 Total: -104.37 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.95 Total: -49.05 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -72.37 -1.04 -73.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352522217.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.648 kcal (2) G-P(sol) polarization free energy of solvation -72.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds