Wall clock time and date at job start Tue Mar 31 2020 11:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38669 * 120.41703 * 2 1 4 4 C 1.38635 * 118.41898 * 180.23888 * 3 2 1 5 5 C 1.38232 * 119.16126 * 359.75915 * 4 3 2 6 6 N 1.31859 * 120.76014 * 359.97438 * 5 4 3 7 7 C 1.31880 * 121.72738 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.61610 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47194 * 179.63808 * 8 7 6 10 10 C 1.52997 * 109.47218 * 59.63780 * 8 7 6 11 11 C 1.53000 * 109.46974 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47006 * 60.00227 * 11 10 8 13 13 C 1.52997 * 109.47068 * 299.99715 * 12 11 10 14 14 H 1.08999 * 109.47139 * 180.02562 * 13 12 11 15 15 N 1.46904 * 109.47279 * 299.99854 * 13 12 11 16 16 C 1.46894 * 111.00251 * 275.06513 * 15 13 12 17 17 C 1.52998 * 109.47231 * 183.86984 * 16 15 13 18 18 C 1.50702 * 115.55194 * 294.91181 * 17 16 15 19 19 H 1.07997 * 119.99900 * 98.83381 * 18 17 16 20 20 C 1.37881 * 119.99772 * 278.84014 * 18 17 16 21 21 N 1.31510 * 119.99899 * 7.46119 * 20 18 17 22 22 Si 1.86799 * 119.99802 * 187.46520 * 20 18 17 23 23 H 1.48498 * 109.47032 * 270.00040 * 22 20 18 24 24 H 1.48500 * 109.47131 * 29.99557 * 22 20 18 25 25 H 1.48497 * 109.47393 * 149.99873 * 22 20 18 26 26 C 1.53007 * 117.51461 * 80.61024 * 17 16 15 27 27 C 1.52996 * 117.50056 * 149.23638 * 17 16 15 28 28 C 1.52995 * 109.47438 * 60.00078 * 13 12 11 29 29 H 1.08990 * 109.47335 * 263.83575 * 1 2 3 30 30 H 1.09002 * 109.46777 * 23.84206 * 1 2 3 31 31 H 1.09003 * 109.47135 * 143.83755 * 1 2 3 32 32 H 1.07995 * 120.79499 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.41994 * 179.72860 * 4 3 2 34 34 H 1.07994 * 119.62093 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47061 * 300.00110 * 10 8 7 36 36 H 1.08996 * 109.47169 * 60.00150 * 10 8 7 37 37 H 1.09001 * 109.47045 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.47371 * 299.99988 * 11 10 8 39 39 H 1.09000 * 109.46820 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47251 * 59.99687 * 12 11 10 41 41 H 1.00895 * 110.99582 * 151.10467 * 15 13 12 42 42 H 1.09002 * 109.47443 * 63.87046 * 16 15 13 43 43 H 1.09001 * 109.47324 * 303.87319 * 16 15 13 44 44 H 0.96997 * 120.00180 * 355.21447 * 21 20 18 45 45 H 1.08997 * 117.49397 * 214.96800 * 26 17 16 46 46 H 1.08994 * 117.49714 * 359.97438 * 26 17 16 47 47 H 1.09002 * 117.50075 * 359.97438 * 27 17 16 48 48 H 1.09001 * 117.50219 * 144.99774 * 27 17 16 49 49 H 1.09000 * 109.46986 * 59.99964 * 28 13 12 50 50 H 1.08992 * 109.47463 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0051 5 6 4.2257 -0.0824 -0.0049 6 7 3.5254 -1.1996 0.0006 7 6 2.2067 -1.1916 0.0065 8 6 1.4540 -2.4972 0.0120 9 1 0.3823 -2.2987 0.0230 10 6 1.8365 -3.3012 1.2562 11 6 1.0718 -4.6264 1.2621 12 6 1.4289 -5.4268 0.0080 13 6 1.0464 -4.6228 -1.2362 14 1 1.3003 -5.1931 -2.1297 15 7 -0.3979 -4.3547 -1.2212 16 6 -1.1483 -5.4805 -1.7934 17 6 -2.6356 -5.1261 -1.8493 18 6 -3.3087 -4.9340 -0.5147 19 1 -3.4591 -3.9385 -0.1241 20 6 -3.7324 -6.0294 0.2077 21 7 -3.4208 -7.2423 -0.1937 22 14 -4.7490 -5.7903 1.7565 23 1 -3.8452 -5.6779 2.9294 24 1 -5.5557 -4.5497 1.6326 25 1 -5.6543 -6.9532 1.9389 26 6 -3.1111 -4.2531 -3.0125 27 6 -3.4664 -5.7408 -2.9775 28 6 1.8109 -3.2976 -1.2422 29 1 -0.3633 -0.1103 1.0216 30 1 -0.3633 0.9400 -0.4154 31 1 -0.3633 -0.8297 -0.6064 32 1 1.6890 2.1423 -0.0004 33 1 4.1735 2.0592 -0.0097 34 1 5.3046 -0.1287 -0.0092 35 1 2.9082 -3.4997 1.2452 36 1 1.5817 -2.7312 2.1497 37 1 1.3440 -5.1990 2.1487 38 1 0.0002 -4.4275 1.2733 39 1 0.8845 -6.3710 0.0124 40 1 2.5006 -5.6257 -0.0033 41 1 -0.6111 -3.4951 -1.7044 42 1 -1.0086 -6.3642 -1.1708 43 1 -0.7853 -5.6846 -2.8007 44 1 -2.9531 -7.3700 -1.0338 45 1 -3.9107 -3.5400 -2.8123 46 1 -2.3641 -3.9308 -3.7378 47 1 -2.9533 -6.3974 -3.6802 48 1 -4.4998 -6.0064 -2.7544 49 1 2.8826 -3.4965 -1.2534 50 1 1.5388 -2.7250 -2.1287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366967581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:57 Heat of formation + Delta-G solvation = 33.585076 kcal Electronic energy + Delta-G solvation = -27211.298941 eV Core-core repulsion = 23816.698814 eV Total energy + Delta-G solvation = -3394.600127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63145 -38.54973 -36.85898 -33.95990 -33.54308 -32.21344 -31.74732 -29.79655 -28.87275 -27.17749 -25.08231 -24.29950 -23.85112 -22.23373 -21.89902 -21.23017 -20.81555 -19.23442 -18.58435 -16.94370 -16.51717 -16.40646 -15.31003 -14.97473 -14.50551 -14.46115 -14.19259 -13.95285 -13.72311 -13.66523 -13.19531 -13.05178 -12.88356 -12.73169 -12.58057 -12.30349 -12.13370 -11.94114 -11.80253 -11.56828 -11.46096 -11.23004 -10.72517 -10.66073 -10.56857 -10.41002 -10.11269 -10.06185 -9.94758 -9.90544 -9.67833 -9.42552 -9.27666 -8.74984 -8.47182 -8.35634 -8.16968 -7.50429 -6.20961 -3.90578 1.05567 1.22463 3.50020 3.52840 3.67862 3.72411 4.28714 4.59108 4.60535 4.71131 4.74224 4.87972 4.95237 5.10525 5.17086 5.22552 5.32461 5.40275 5.47246 5.55843 5.60178 5.67861 5.70841 5.73399 5.80475 5.90508 5.92546 5.98699 6.02832 6.05355 6.10618 6.20676 6.23786 6.26543 6.32000 6.37361 6.42677 6.51371 6.56738 6.58669 6.67734 6.72083 6.75929 6.77940 6.91925 7.10096 7.27672 7.41367 7.94488 8.00685 8.16360 8.43096 8.57133 9.01819 9.80718 11.18658 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.003775 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.747861 B = 7415.855471 C = 7489.913910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.131 4.131 3 C -0.080 4.080 4 C -0.182 4.182 5 C 0.089 3.911 6 N -0.475 5.475 7 C 0.141 3.859 8 C -0.036 4.036 9 H 0.104 0.896 10 C -0.097 4.097 11 C -0.111 4.111 12 C -0.101 4.101 13 C 0.086 3.914 14 H 0.032 0.968 15 N -0.655 5.655 16 C 0.103 3.897 17 C 0.032 3.968 18 C -0.546 4.546 19 H 0.051 0.949 20 C 0.026 3.974 21 N -0.912 5.912 22 Si 1.066 2.934 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.288 1.288 26 C -0.200 4.200 27 C -0.185 4.185 28 C -0.101 4.101 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.329 0.671 42 H 0.071 0.929 43 H -0.007 1.007 44 H 0.272 0.728 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.767 13.692 -0.347 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.133 4.133 3 C -0.106 4.106 4 C -0.202 4.202 5 C -0.068 4.068 6 N -0.183 5.183 7 C 0.004 3.996 8 C -0.055 4.055 9 H 0.122 0.878 10 C -0.135 4.135 11 C -0.148 4.148 12 C -0.140 4.140 13 C -0.024 4.024 14 H 0.050 0.950 15 N -0.286 5.286 16 C -0.026 4.026 17 C 0.032 3.968 18 C -0.584 4.584 19 H 0.069 0.931 20 C -0.178 4.178 21 N -0.548 5.548 22 Si 0.895 3.105 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.214 1.214 26 C -0.238 4.238 27 C -0.223 4.223 28 C -0.140 4.140 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.168 0.832 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.147 0.853 42 H 0.089 0.911 43 H 0.011 0.989 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.425 11.856 1.570 17.245 hybrid contribution 0.644 1.906 -2.389 3.123 sum 13.068 13.762 -0.819 18.996 Atomic orbital electron populations 1.20847 0.89892 1.03290 1.03304 1.20837 0.97857 0.93494 1.01087 1.21474 0.94148 0.98015 0.96931 1.22063 0.95279 0.99479 1.03362 1.22698 1.00105 0.87833 0.96170 1.67476 1.07960 1.31136 1.11765 1.21384 0.89505 0.95063 0.93697 1.20233 0.99711 0.89192 0.96343 0.87783 1.21417 1.00171 0.96199 0.95694 1.21396 1.02529 0.94485 0.96406 1.21437 0.99061 0.98700 0.94754 1.21503 0.89282 0.94851 0.96737 0.94983 1.60319 1.03219 1.05131 1.59907 1.21658 0.93626 0.93727 0.93626 1.19152 0.90227 0.97205 0.90262 1.21097 1.39916 0.94708 1.02639 0.93098 1.25607 0.96720 0.92776 1.02710 1.70700 1.38810 1.22516 1.22759 0.83593 0.76352 0.75057 0.75489 1.21570 1.21721 1.21382 1.22821 1.03283 0.93687 1.03990 1.22784 1.01437 0.94059 1.04035 1.21637 1.00532 0.95440 0.96350 0.90544 0.91654 0.89961 0.85176 0.85268 0.83209 0.92052 0.92990 0.93186 0.89269 0.91978 0.93079 0.85307 0.91057 0.98934 0.91668 0.90319 0.92076 0.91928 0.89965 0.91059 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.19 36.01 0.33 -0.93 16 2 C -0.13 -1.56 5.90 -104.48 -0.62 -2.18 16 3 C -0.08 -0.81 9.84 -39.28 -0.39 -1.20 16 4 C -0.18 -1.73 10.11 -39.44 -0.40 -2.13 16 5 C 0.09 0.97 11.18 -17.54 -0.20 0.77 16 6 N -0.48 -6.40 9.81 -9.47 -0.09 -6.49 16 7 C 0.14 1.90 5.46 -82.59 -0.45 1.44 16 8 C -0.04 -0.50 2.07 -91.77 -0.19 -0.69 16 9 H 0.10 1.53 4.95 -51.93 -0.26 1.28 16 10 C -0.10 -1.40 5.10 -26.73 -0.14 -1.53 16 11 C -0.11 -1.78 5.77 -26.73 -0.15 -1.93 16 12 C -0.10 -1.64 5.53 -26.73 -0.15 -1.79 16 13 C 0.09 1.38 2.82 -67.71 -0.19 1.19 16 14 H 0.03 0.53 7.74 -51.93 -0.40 0.13 16 15 N -0.66 -12.06 4.75 -106.73 -0.51 -12.57 16 16 C 0.10 2.20 5.20 -3.83 -0.02 2.18 16 17 C 0.03 0.76 0.97 -155.66 -0.15 0.61 16 18 C -0.55 -14.50 8.72 -34.44 -0.30 -14.80 16 19 H 0.05 1.39 7.82 -52.49 -0.41 0.97 16 20 C 0.03 0.73 5.41 -17.82 -0.10 0.63 16 21 N -0.91 -26.48 13.61 55.43 0.75 -25.73 16 22 Si 1.07 24.95 29.91 -169.99 -5.08 19.86 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C -0.20 -4.22 9.96 -26.73 -0.27 -4.49 16 27 C -0.18 -4.21 9.05 -26.73 -0.24 -4.45 16 28 C -0.10 -1.44 4.49 -26.73 -0.12 -1.56 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.08 0.97 6.50 -51.93 -0.34 0.63 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.69 7.60 -51.93 -0.39 1.30 16 39 H 0.06 1.13 7.52 -51.93 -0.39 0.74 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.33 5.85 8.14 -39.29 -0.32 5.53 16 42 H 0.07 1.73 6.92 -51.93 -0.36 1.37 16 43 H -0.01 -0.15 7.91 -51.93 -0.41 -0.56 16 44 H 0.27 7.85 6.05 -40.82 -0.25 7.60 16 45 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 49 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 50 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -28.99 388.87 -11.45 -40.44 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.65 Total: 9.45 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: -3.73 Total: -30.83 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.15 Total: -44.78 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.99 -11.45 -40.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366967581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.027 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds