Wall clock time and date at job start Tue Mar 31 2020 11:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38669 * 120.41703 * 2 1 4 4 C 1.38635 * 118.41898 * 180.23888 * 3 2 1 5 5 C 1.38232 * 119.16126 * 359.75915 * 4 3 2 6 6 N 1.31859 * 120.76014 * 359.97438 * 5 4 3 7 7 C 1.31880 * 121.72738 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.61610 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47194 * 179.63808 * 8 7 6 10 10 C 1.52997 * 109.47218 * 59.63780 * 8 7 6 11 11 C 1.53000 * 109.46974 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47006 * 60.00227 * 11 10 8 13 13 C 1.52997 * 109.47068 * 299.99715 * 12 11 10 14 14 H 1.08999 * 109.47139 * 180.02562 * 13 12 11 15 15 N 1.46904 * 109.47279 * 299.99854 * 13 12 11 16 16 C 1.46894 * 111.00251 * 275.06513 * 15 13 12 17 17 C 1.52998 * 109.47231 * 183.86984 * 16 15 13 18 18 C 1.50702 * 115.55194 * 294.91181 * 17 16 15 19 19 H 1.07997 * 119.99900 * 98.83381 * 18 17 16 20 20 C 1.37881 * 119.99772 * 278.84014 * 18 17 16 21 21 N 1.31510 * 119.99899 * 7.46119 * 20 18 17 22 22 Si 1.86799 * 119.99802 * 187.46520 * 20 18 17 23 23 H 1.48498 * 109.47032 * 270.00040 * 22 20 18 24 24 H 1.48500 * 109.47131 * 29.99557 * 22 20 18 25 25 H 1.48497 * 109.47393 * 149.99873 * 22 20 18 26 26 C 1.53007 * 117.51461 * 80.61024 * 17 16 15 27 27 C 1.52996 * 117.50056 * 149.23638 * 17 16 15 28 28 C 1.52995 * 109.47438 * 60.00078 * 13 12 11 29 29 H 1.08990 * 109.47335 * 263.83575 * 1 2 3 30 30 H 1.09002 * 109.46777 * 23.84206 * 1 2 3 31 31 H 1.09003 * 109.47135 * 143.83755 * 1 2 3 32 32 H 1.07995 * 120.79499 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.41994 * 179.72860 * 4 3 2 34 34 H 1.07994 * 119.62093 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47061 * 300.00110 * 10 8 7 36 36 H 1.08996 * 109.47169 * 60.00150 * 10 8 7 37 37 H 1.09001 * 109.47045 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.47371 * 299.99988 * 11 10 8 39 39 H 1.09000 * 109.46820 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47251 * 59.99687 * 12 11 10 41 41 H 1.00895 * 110.99582 * 151.10467 * 15 13 12 42 42 H 1.09002 * 109.47443 * 63.87046 * 16 15 13 43 43 H 1.09001 * 109.47324 * 303.87319 * 16 15 13 44 44 H 0.96997 * 120.00180 * 355.21447 * 21 20 18 45 45 H 1.08997 * 117.49397 * 214.96800 * 26 17 16 46 46 H 1.08994 * 117.49714 * 359.97438 * 26 17 16 47 47 H 1.09002 * 117.50075 * 359.97438 * 27 17 16 48 48 H 1.09001 * 117.50219 * 144.99774 * 27 17 16 49 49 H 1.09000 * 109.46986 * 59.99964 * 28 13 12 50 50 H 1.08992 * 109.47463 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0051 5 6 4.2257 -0.0824 -0.0049 6 7 3.5254 -1.1996 0.0006 7 6 2.2067 -1.1916 0.0065 8 6 1.4540 -2.4972 0.0120 9 1 0.3823 -2.2987 0.0230 10 6 1.8365 -3.3012 1.2562 11 6 1.0718 -4.6264 1.2621 12 6 1.4289 -5.4268 0.0080 13 6 1.0464 -4.6228 -1.2362 14 1 1.3003 -5.1931 -2.1297 15 7 -0.3979 -4.3547 -1.2212 16 6 -1.1483 -5.4805 -1.7934 17 6 -2.6356 -5.1261 -1.8493 18 6 -3.3087 -4.9340 -0.5147 19 1 -3.4591 -3.9385 -0.1241 20 6 -3.7324 -6.0294 0.2077 21 7 -3.4208 -7.2423 -0.1937 22 14 -4.7490 -5.7903 1.7565 23 1 -3.8452 -5.6779 2.9294 24 1 -5.5557 -4.5497 1.6326 25 1 -5.6543 -6.9532 1.9389 26 6 -3.1111 -4.2531 -3.0125 27 6 -3.4664 -5.7408 -2.9775 28 6 1.8109 -3.2976 -1.2422 29 1 -0.3633 -0.1103 1.0216 30 1 -0.3633 0.9400 -0.4154 31 1 -0.3633 -0.8297 -0.6064 32 1 1.6890 2.1423 -0.0004 33 1 4.1735 2.0592 -0.0097 34 1 5.3046 -0.1287 -0.0092 35 1 2.9082 -3.4997 1.2452 36 1 1.5817 -2.7312 2.1497 37 1 1.3440 -5.1990 2.1487 38 1 0.0002 -4.4275 1.2733 39 1 0.8845 -6.3710 0.0124 40 1 2.5006 -5.6257 -0.0033 41 1 -0.6111 -3.4951 -1.7044 42 1 -1.0086 -6.3642 -1.1708 43 1 -0.7853 -5.6846 -2.8007 44 1 -2.9531 -7.3700 -1.0338 45 1 -3.9107 -3.5400 -2.8123 46 1 -2.3641 -3.9308 -3.7378 47 1 -2.9533 -6.3974 -3.6802 48 1 -4.4998 -6.0064 -2.7544 49 1 2.8826 -3.4965 -1.2534 50 1 1.5388 -2.7250 -2.1287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366967581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:56 Heat of formation + Delta-G solvation = 19.883230 kcal Electronic energy + Delta-G solvation = -27211.893098 eV Core-core repulsion = 23816.698814 eV Total energy + Delta-G solvation = -3395.194283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54726 -39.86091 -38.55378 -35.17328 -34.49691 -33.84352 -33.31350 -30.94802 -30.15552 -28.01980 -27.04621 -25.93643 -24.96128 -23.32634 -23.07861 -22.86878 -21.86488 -21.15797 -19.87966 -18.53615 -17.71351 -17.39127 -16.57581 -16.25480 -15.75575 -15.59069 -15.51296 -15.39844 -15.20271 -15.17592 -14.61727 -14.30615 -14.16092 -13.90959 -13.64269 -13.50705 -13.34780 -13.22009 -13.12201 -12.99010 -12.82899 -12.58820 -12.48786 -12.40835 -12.18644 -11.91460 -11.75733 -11.37978 -11.26094 -11.14668 -11.10662 -10.55628 -10.41307 -10.31455 -10.19641 -10.12781 -9.61472 -9.02567 -8.38211 -6.07119 0.22800 0.42346 1.57882 1.65529 1.81436 2.66169 2.88030 3.15307 3.38174 3.38558 3.53463 3.70709 3.87596 3.91781 4.01970 4.08471 4.19860 4.23179 4.24950 4.40326 4.44098 4.47070 4.54430 4.58426 4.62148 4.64058 4.65986 4.68165 4.75204 4.81883 4.82037 4.83903 4.86360 4.94002 5.06036 5.09269 5.14788 5.19950 5.22801 5.30697 5.35083 5.39008 5.43325 5.46850 5.49711 5.62919 5.71988 5.90784 6.27869 6.38683 6.45678 6.73497 6.88196 7.15500 7.69912 9.02288 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.003775 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.747861 B = 7415.855471 C = 7489.913910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.143 4.143 3 C -0.083 4.083 4 C -0.173 4.173 5 C 0.077 3.923 6 N -0.500 5.500 7 C 0.120 3.880 8 C -0.030 4.030 9 H 0.093 0.907 10 C -0.087 4.087 11 C -0.105 4.105 12 C -0.099 4.099 13 C 0.089 3.911 14 H 0.032 0.968 15 N -0.657 5.657 16 C 0.120 3.880 17 C 0.007 3.993 18 C -0.546 4.546 19 H 0.040 0.960 20 C -0.020 4.020 21 N -0.940 5.940 22 Si 1.104 2.896 23 H -0.282 1.282 24 H -0.275 1.275 25 H -0.291 1.291 26 C -0.173 4.173 27 C -0.191 4.191 28 C -0.088 4.088 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.335 0.665 42 H 0.036 0.964 43 H 0.003 0.997 44 H 0.263 0.737 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.193 16.470 -0.661 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.145 4.145 3 C -0.108 4.108 4 C -0.192 4.192 5 C -0.080 4.080 6 N -0.209 5.209 7 C -0.017 4.017 8 C -0.049 4.049 9 H 0.111 0.889 10 C -0.125 4.125 11 C -0.143 4.143 12 C -0.138 4.138 13 C -0.021 4.021 14 H 0.050 0.950 15 N -0.289 5.289 16 C -0.010 4.010 17 C 0.006 3.994 18 C -0.584 4.584 19 H 0.058 0.942 20 C -0.219 4.219 21 N -0.577 5.577 22 Si 0.929 3.071 23 H -0.208 1.208 24 H -0.200 1.200 25 H -0.217 1.217 26 C -0.210 4.210 27 C -0.229 4.229 28 C -0.126 4.126 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.191 0.809 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.853 14.655 1.245 20.204 hybrid contribution 0.264 1.122 -2.308 2.580 sum 14.117 15.776 -1.063 21.197 Atomic orbital electron populations 1.20823 0.89641 1.03679 1.02953 1.20977 0.98236 0.93849 1.01442 1.21842 0.94705 0.98361 0.95913 1.22443 0.95280 1.00267 1.01211 1.23200 1.01283 0.87818 0.95735 1.67415 1.08032 1.32750 1.12698 1.21211 0.89846 0.94937 0.95753 1.20074 0.99267 0.89888 0.95661 0.88936 1.21303 0.99809 0.95108 0.96248 1.21294 1.00653 0.95700 0.96606 1.21421 0.99861 0.97439 0.95042 1.21523 0.87989 0.96072 0.96490 0.94996 1.60211 1.04510 1.04368 1.59789 1.21293 0.92875 0.93402 0.93431 1.19198 0.91126 0.99363 0.89698 1.21321 1.39277 0.93928 1.03882 0.94193 1.26721 0.97435 0.92558 1.05142 1.70800 1.40565 1.23411 1.22964 0.83080 0.75455 0.75448 0.73107 1.20794 1.19975 1.21678 1.22817 1.03169 0.92413 1.02573 1.22713 1.00183 0.95834 1.04183 1.21503 1.00144 0.94170 0.96832 0.90888 0.89768 0.91430 0.82582 0.81952 0.80875 0.91759 0.92973 0.92782 0.92548 0.94723 0.91052 0.84632 0.94541 0.97949 0.92705 0.90351 0.89239 0.90617 0.92212 0.90730 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 9.19 71.24 0.65 -1.68 16 2 C -0.14 -3.17 5.90 -19.77 -0.12 -3.28 16 3 C -0.08 -1.42 9.84 22.47 0.22 -1.20 16 4 C -0.17 -2.66 10.11 22.36 0.23 -2.43 16 5 C 0.08 1.46 11.18 84.69 0.95 2.41 16 6 N -0.50 -12.60 9.81 -183.88 -1.80 -14.40 16 7 C 0.12 3.06 5.46 42.54 0.23 3.30 16 8 C -0.03 -0.82 2.07 -11.54 -0.02 -0.85 16 9 H 0.09 2.75 4.95 -2.39 -0.01 2.74 16 10 C -0.09 -2.48 5.10 30.59 0.16 -2.33 16 11 C -0.10 -3.45 5.77 30.59 0.18 -3.27 16 12 C -0.10 -3.27 5.53 30.59 0.17 -3.10 16 13 C 0.09 2.84 2.82 44.91 0.13 2.97 16 14 H 0.03 1.04 7.74 -2.39 -0.02 1.02 16 15 N -0.66 -24.43 4.75 -491.59 -2.34 -26.76 16 16 C 0.12 5.21 5.20 86.30 0.45 5.66 16 17 C 0.01 0.32 0.97 -52.93 -0.05 0.27 16 18 C -0.55 -29.49 8.72 25.60 0.22 -29.26 16 19 H 0.04 2.20 7.82 -2.91 -0.02 2.17 16 20 C -0.02 -1.10 5.41 84.66 0.46 -0.64 16 21 N -0.94 -56.18 13.61 21.45 0.29 -55.89 16 22 Si 1.10 50.96 29.91 68.60 2.05 53.01 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 C -0.17 -7.03 9.96 30.60 0.30 -6.73 16 27 C -0.19 -8.69 9.05 30.59 0.28 -8.42 16 28 C -0.09 -2.43 4.49 30.59 0.14 -2.29 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.35 8.06 -2.39 -0.02 1.33 16 31 H 0.07 1.57 6.50 -2.39 -0.02 1.55 16 32 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 2.23 7.60 -2.39 -0.02 2.21 16 39 H 0.03 1.31 7.52 -2.39 -0.02 1.29 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.34 11.76 8.14 -89.70 -0.73 11.03 16 42 H 0.04 1.84 6.92 -2.39 -0.02 1.82 16 43 H 0.00 0.11 7.91 -2.39 -0.02 0.09 16 44 H 0.26 15.73 6.05 -92.71 -0.56 15.16 16 45 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 48 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 49 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 50 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 Total: -1.00 -63.63 388.87 3.16 -60.48 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.39 Total: 34.44 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 4.57 Total: -50.87 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -3.85 Total: -97.05 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -63.63 3.16 -60.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366967581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.361 kcal (2) G-P(sol) polarization free energy of solvation -63.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds