Wall clock time and date at job start Tue Mar 31 2020 11:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38668 * 120.41792 * 2 1 4 4 C 1.38623 * 118.41879 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.16220 * 359.97438 * 4 3 2 6 6 N 1.31854 * 120.76394 * 359.97438 * 5 4 3 7 7 C 1.31885 * 121.72536 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.61592 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47122 * 175.46850 * 8 7 6 10 10 C 1.52998 * 109.47187 * 295.46395 * 8 7 6 11 11 C 1.53005 * 109.47420 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46698 * 299.99997 * 11 10 8 13 13 C 1.52998 * 109.47182 * 59.99858 * 12 11 10 14 14 H 1.08998 * 109.47384 * 60.00063 * 13 12 11 15 15 N 1.46896 * 109.47047 * 180.02562 * 13 12 11 16 16 C 1.46903 * 111.00236 * 274.99787 * 15 13 12 17 17 C 1.52989 * 109.47289 * 185.09926 * 16 15 13 18 18 C 1.50704 * 115.55170 * 58.50406 * 17 16 15 19 19 H 1.08000 * 119.99884 * 264.93697 * 18 17 16 20 20 C 1.37882 * 119.99714 * 84.93746 * 18 17 16 21 21 N 1.31516 * 119.99994 * 4.88985 * 20 18 17 22 22 Si 1.86799 * 119.99674 * 184.88804 * 20 18 17 23 23 H 1.48492 * 109.47542 * 59.99834 * 22 20 18 24 24 H 1.48503 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47047 * 299.99706 * 22 20 18 26 26 C 1.53002 * 117.50229 * 272.83103 * 17 16 15 27 27 C 1.53000 * 117.49873 * 204.17447 * 17 16 15 28 28 C 1.52995 * 109.47406 * 55.46355 * 8 7 6 29 29 H 1.08996 * 109.47380 * 96.01619 * 1 2 3 30 30 H 1.09006 * 109.47003 * 216.01569 * 1 2 3 31 31 H 1.09002 * 109.46966 * 336.01743 * 1 2 3 32 32 H 1.08005 * 120.79311 * 0.25597 * 3 2 1 33 33 H 1.08007 * 120.42051 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.61747 * 179.97438 * 5 4 3 35 35 H 1.09006 * 109.47416 * 300.00008 * 10 8 7 36 36 H 1.08998 * 109.47384 * 59.99980 * 10 8 7 37 37 H 1.08997 * 109.47414 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.47139 * 59.99486 * 11 10 8 39 39 H 1.08998 * 109.46909 * 299.99630 * 12 11 10 40 40 H 1.08997 * 109.46858 * 180.02562 * 12 11 10 41 41 H 1.00895 * 111.00193 * 38.95350 * 15 13 12 42 42 H 1.09003 * 109.46925 * 305.10682 * 16 15 13 43 43 H 1.08999 * 109.46697 * 65.09481 * 16 15 13 44 44 H 0.96998 * 119.99224 * 180.02562 * 21 20 18 45 45 H 1.09006 * 117.49475 * 0.02562 * 26 17 16 46 46 H 1.08993 * 117.49842 * 145.01855 * 26 17 16 47 47 H 1.09005 * 117.50076 * 214.98386 * 27 17 16 48 48 H 1.09004 * 117.49715 * 359.97333 * 27 17 16 49 49 H 1.09003 * 109.47384 * 300.00335 * 28 8 7 50 50 H 1.09007 * 109.47232 * 59.99633 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5945 1.1475 0.0005 5 6 4.2256 -0.0824 0.0016 6 7 3.5254 -1.1997 0.0026 7 6 2.2066 -1.1917 0.0021 8 6 1.4540 -2.4972 0.0039 9 1 0.3849 -2.3002 0.0844 10 6 1.7370 -3.2508 -1.2972 11 6 0.9723 -4.5761 -1.2957 12 6 1.4252 -5.4248 -0.1058 13 6 1.1421 -4.6711 1.1952 14 1 0.0732 -4.4737 1.2757 15 7 1.5775 -5.4857 2.3375 16 6 0.5311 -6.4371 2.7349 17 6 0.9682 -7.1765 4.0010 18 6 1.2640 -6.3042 5.1938 19 1 2.2781 -5.9929 5.3969 20 6 0.2401 -5.9035 6.0257 21 7 -0.9786 -6.3597 5.8352 22 14 0.5839 -4.7128 7.4233 23 1 1.1157 -3.4412 6.8708 24 1 -0.6742 -4.4432 8.1647 25 1 1.5837 -5.3080 8.3460 26 6 1.8101 -8.4419 3.8251 27 6 0.3485 -8.5499 4.2666 28 6 1.9073 -3.3456 1.1936 29 1 -0.3634 -0.1077 -1.0219 30 1 -0.3633 -0.8313 0.6043 31 1 -0.3633 0.9390 0.4177 32 1 1.6890 2.1424 0.0041 33 1 4.1736 2.0592 0.0010 34 1 5.3046 -0.1286 0.0016 35 1 1.4140 -2.6464 -2.1449 36 1 2.8060 -3.4478 -1.3778 37 1 1.1743 -5.1132 -2.2224 38 1 -0.0966 -4.3787 -1.2152 39 1 2.4941 -5.6221 -0.1863 40 1 0.8808 -6.3690 -0.1050 41 1 2.4419 -5.9638 2.1322 42 1 -0.3954 -5.8973 2.9308 43 1 0.3697 -7.1560 1.9317 44 1 -1.6990 -6.0775 6.4203 45 1 2.0529 -8.7474 2.8073 46 1 2.5776 -8.6436 4.5722 47 1 0.1549 -8.8227 5.3040 48 1 -0.3711 -8.9265 3.5395 49 1 2.9763 -3.5427 1.1131 50 1 1.7057 -2.8087 2.1206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366967582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:59 Heat of formation + Delta-G solvation = 36.622380 kcal Electronic energy + Delta-G solvation = -26519.527268 eV Core-core repulsion = 23125.058849 eV Total energy + Delta-G solvation = -3394.468419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66662 -38.48885 -36.62930 -34.19757 -33.63686 -32.38120 -31.72592 -29.86538 -28.70567 -27.26023 -25.47934 -24.29319 -23.82987 -22.29447 -21.73022 -21.06318 -20.60423 -19.70345 -18.82536 -16.93698 -16.38547 -16.03571 -15.35784 -14.73112 -14.58856 -14.53106 -14.32711 -14.02488 -13.94131 -13.66524 -13.22572 -13.17718 -12.97110 -12.89509 -12.69731 -12.40456 -12.25364 -12.08799 -11.69566 -11.56947 -11.24898 -10.87934 -10.81910 -10.79389 -10.65582 -10.40062 -10.38334 -10.23360 -10.08176 -10.04743 -9.75779 -9.38614 -9.21969 -8.83738 -8.79994 -8.23626 -7.94161 -7.37543 -5.86190 -3.87418 1.02160 1.20000 3.41908 3.45155 3.50402 3.69280 4.23245 4.47056 4.55475 4.67423 4.73612 4.83143 4.88819 4.98426 5.08060 5.22863 5.30386 5.35296 5.43283 5.43941 5.46570 5.52191 5.54880 5.61674 5.71108 5.73506 5.77802 5.87121 5.91413 5.98932 6.06344 6.13934 6.24152 6.24979 6.27945 6.36349 6.37332 6.45555 6.58174 6.64114 6.64614 6.74766 6.78284 6.83932 7.01378 7.22989 7.59519 7.65414 7.98718 8.05228 8.11133 8.30303 8.65728 9.10620 9.74991 11.23160 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003665 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.421987 B = 7637.080620 C = 8825.838361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C -0.078 4.078 4 C -0.181 4.181 5 C 0.094 3.906 6 N -0.471 5.471 7 C 0.145 3.855 8 C -0.042 4.042 9 H 0.087 0.913 10 C -0.102 4.102 11 C -0.113 4.113 12 C -0.149 4.149 13 C 0.091 3.909 14 H 0.070 0.930 15 N -0.661 5.661 16 C 0.110 3.890 17 C 0.049 3.951 18 C -0.464 4.464 19 H 0.057 0.943 20 C 0.068 3.932 21 N -0.888 5.888 22 Si 0.887 3.113 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.218 4.218 27 C -0.153 4.153 28 C -0.090 4.090 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.331 0.669 42 H 0.069 0.931 43 H -0.006 1.006 44 H 0.256 0.744 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 12.295 -16.229 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.138 4.138 3 C -0.104 4.104 4 C -0.201 4.201 5 C -0.063 4.063 6 N -0.179 5.179 7 C 0.007 3.993 8 C -0.062 4.062 9 H 0.105 0.895 10 C -0.140 4.140 11 C -0.151 4.151 12 C -0.189 4.189 13 C -0.020 4.020 14 H 0.089 0.911 15 N -0.289 5.289 16 C -0.019 4.019 17 C 0.049 3.951 18 C -0.502 4.502 19 H 0.075 0.925 20 C -0.134 4.134 21 N -0.526 5.526 22 Si 0.715 3.285 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.255 4.255 27 C -0.191 4.191 28 C -0.129 4.129 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.170 0.830 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.087 0.913 43 H 0.012 0.988 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.113 11.975 -15.646 20.128 hybrid contribution -0.216 0.960 0.075 0.987 sum 3.898 12.935 -15.571 20.614 Atomic orbital electron populations 1.20826 0.90345 1.03343 1.02641 1.20759 0.97600 0.93619 1.01820 1.21451 0.94202 0.97917 0.96834 1.22083 0.95262 0.99573 1.03142 1.22732 1.00240 0.87718 0.95641 1.67469 1.07789 1.31188 1.11485 1.21159 0.89651 0.94545 0.93900 1.20302 0.98652 0.90238 0.96995 0.89492 1.21482 1.01283 0.95624 0.95641 1.21465 0.99873 0.95663 0.98103 1.22338 1.01331 0.98991 0.96201 1.21546 0.99100 0.93332 0.88038 0.91145 1.60298 1.06066 1.27732 1.34837 1.21516 0.94147 0.92184 0.94017 1.18845 0.96802 0.85672 0.93827 1.20235 0.93538 1.29288 1.07112 0.92495 1.24904 0.95233 0.95993 0.97229 1.70010 1.00172 1.43652 1.38811 0.86754 0.77157 0.82215 0.82358 1.20260 1.21654 1.20569 1.23010 0.94926 1.08781 0.98831 1.22474 0.92309 1.04182 1.00135 1.21452 1.00809 0.94583 0.96029 0.90949 0.90319 0.91492 0.85165 0.85141 0.83005 0.92773 0.91148 0.92332 0.92099 0.91980 0.92309 0.85145 0.91291 0.98783 0.93421 0.92320 0.90675 0.89809 0.92410 0.91079 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.28 36.01 0.33 -0.70 16 2 C -0.14 -1.52 5.90 -104.48 -0.62 -2.14 16 3 C -0.08 -0.76 9.84 -39.28 -0.39 -1.15 16 4 C -0.18 -1.71 10.11 -39.44 -0.40 -2.11 16 5 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 6 N -0.47 -6.39 9.81 -9.48 -0.09 -6.48 16 7 C 0.15 1.88 5.47 -82.59 -0.45 1.43 16 8 C -0.04 -0.54 2.25 -91.78 -0.21 -0.74 16 9 H 0.09 1.02 5.54 -51.93 -0.29 0.73 16 10 C -0.10 -1.19 5.14 -26.73 -0.14 -1.32 16 11 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 12 C -0.15 -2.04 5.17 -26.73 -0.14 -2.18 16 13 C 0.09 1.46 2.47 -67.69 -0.17 1.29 16 14 H 0.07 1.19 7.72 -51.93 -0.40 0.79 16 15 N -0.66 -13.00 5.99 -106.71 -0.64 -13.64 16 16 C 0.11 2.44 5.36 -3.83 -0.02 2.42 16 17 C 0.05 1.21 1.67 -155.66 -0.26 0.95 16 18 C -0.46 -12.81 8.61 -34.44 -0.30 -13.11 16 19 H 0.06 1.61 7.82 -52.49 -0.41 1.19 16 20 C 0.07 1.89 5.43 -17.82 -0.10 1.79 16 21 N -0.89 -25.54 12.65 55.43 0.70 -24.83 16 22 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.22 -4.85 9.94 -26.70 -0.27 -5.11 16 27 C -0.15 -3.68 9.17 -26.70 -0.24 -3.92 16 28 C -0.09 -1.38 4.67 -26.71 -0.12 -1.51 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.76 6.37 -51.93 -0.33 0.43 16 31 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 32 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 40 H 0.06 0.84 7.55 -51.93 -0.39 0.45 16 41 H 0.33 6.26 8.53 -39.29 -0.33 5.92 16 42 H 0.07 1.70 7.93 -51.93 -0.41 1.29 16 43 H -0.01 -0.12 7.53 -51.93 -0.39 -0.51 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 47 H 0.08 2.18 8.14 -51.93 -0.42 1.75 16 48 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 50 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -29.94 393.91 -11.79 -41.74 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.84 Total: 7.11 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -3.83 Total: -26.70 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.03 Total: -44.95 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.94 -11.79 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366967582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.359 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds