Wall clock time and date at job start Tue Mar 31 2020 11:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38668 * 120.41792 * 2 1 4 4 C 1.38623 * 118.41879 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.16220 * 359.97438 * 4 3 2 6 6 N 1.31854 * 120.76394 * 359.97438 * 5 4 3 7 7 C 1.31885 * 121.72536 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.61592 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47122 * 175.46850 * 8 7 6 10 10 C 1.52998 * 109.47187 * 295.46395 * 8 7 6 11 11 C 1.53005 * 109.47420 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46698 * 299.99997 * 11 10 8 13 13 C 1.52998 * 109.47182 * 59.99858 * 12 11 10 14 14 H 1.08998 * 109.47384 * 60.00063 * 13 12 11 15 15 N 1.46896 * 109.47047 * 180.02562 * 13 12 11 16 16 C 1.46903 * 111.00236 * 274.99787 * 15 13 12 17 17 C 1.52989 * 109.47289 * 185.09926 * 16 15 13 18 18 C 1.50704 * 115.55170 * 58.50406 * 17 16 15 19 19 H 1.08000 * 119.99884 * 264.93697 * 18 17 16 20 20 C 1.37882 * 119.99714 * 84.93746 * 18 17 16 21 21 N 1.31516 * 119.99994 * 4.88985 * 20 18 17 22 22 Si 1.86799 * 119.99674 * 184.88804 * 20 18 17 23 23 H 1.48492 * 109.47542 * 59.99834 * 22 20 18 24 24 H 1.48503 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47047 * 299.99706 * 22 20 18 26 26 C 1.53002 * 117.50229 * 272.83103 * 17 16 15 27 27 C 1.53000 * 117.49873 * 204.17447 * 17 16 15 28 28 C 1.52995 * 109.47406 * 55.46355 * 8 7 6 29 29 H 1.08996 * 109.47380 * 96.01619 * 1 2 3 30 30 H 1.09006 * 109.47003 * 216.01569 * 1 2 3 31 31 H 1.09002 * 109.46966 * 336.01743 * 1 2 3 32 32 H 1.08005 * 120.79311 * 0.25597 * 3 2 1 33 33 H 1.08007 * 120.42051 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.61747 * 179.97438 * 5 4 3 35 35 H 1.09006 * 109.47416 * 300.00008 * 10 8 7 36 36 H 1.08998 * 109.47384 * 59.99980 * 10 8 7 37 37 H 1.08997 * 109.47414 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.47139 * 59.99486 * 11 10 8 39 39 H 1.08998 * 109.46909 * 299.99630 * 12 11 10 40 40 H 1.08997 * 109.46858 * 180.02562 * 12 11 10 41 41 H 1.00895 * 111.00193 * 38.95350 * 15 13 12 42 42 H 1.09003 * 109.46925 * 305.10682 * 16 15 13 43 43 H 1.08999 * 109.46697 * 65.09481 * 16 15 13 44 44 H 0.96998 * 119.99224 * 180.02562 * 21 20 18 45 45 H 1.09006 * 117.49475 * 0.02562 * 26 17 16 46 46 H 1.08993 * 117.49842 * 145.01855 * 26 17 16 47 47 H 1.09005 * 117.50076 * 214.98386 * 27 17 16 48 48 H 1.09004 * 117.49715 * 359.97333 * 27 17 16 49 49 H 1.09003 * 109.47384 * 300.00335 * 28 8 7 50 50 H 1.09007 * 109.47232 * 59.99633 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5945 1.1475 0.0005 5 6 4.2256 -0.0824 0.0016 6 7 3.5254 -1.1997 0.0026 7 6 2.2066 -1.1917 0.0021 8 6 1.4540 -2.4972 0.0039 9 1 0.3849 -2.3002 0.0844 10 6 1.7370 -3.2508 -1.2972 11 6 0.9723 -4.5761 -1.2957 12 6 1.4252 -5.4248 -0.1058 13 6 1.1421 -4.6711 1.1952 14 1 0.0732 -4.4737 1.2757 15 7 1.5775 -5.4857 2.3375 16 6 0.5311 -6.4371 2.7349 17 6 0.9682 -7.1765 4.0010 18 6 1.2640 -6.3042 5.1938 19 1 2.2781 -5.9929 5.3969 20 6 0.2401 -5.9035 6.0257 21 7 -0.9786 -6.3597 5.8352 22 14 0.5839 -4.7128 7.4233 23 1 1.1157 -3.4412 6.8708 24 1 -0.6742 -4.4432 8.1647 25 1 1.5837 -5.3080 8.3460 26 6 1.8101 -8.4419 3.8251 27 6 0.3485 -8.5499 4.2666 28 6 1.9073 -3.3456 1.1936 29 1 -0.3634 -0.1077 -1.0219 30 1 -0.3633 -0.8313 0.6043 31 1 -0.3633 0.9390 0.4177 32 1 1.6890 2.1424 0.0041 33 1 4.1736 2.0592 0.0010 34 1 5.3046 -0.1286 0.0016 35 1 1.4140 -2.6464 -2.1449 36 1 2.8060 -3.4478 -1.3778 37 1 1.1743 -5.1132 -2.2224 38 1 -0.0966 -4.3787 -1.2152 39 1 2.4941 -5.6221 -0.1863 40 1 0.8808 -6.3690 -0.1050 41 1 2.4419 -5.9638 2.1322 42 1 -0.3954 -5.8973 2.9308 43 1 0.3697 -7.1560 1.9317 44 1 -1.6990 -6.0775 6.4203 45 1 2.0529 -8.7474 2.8073 46 1 2.5776 -8.6436 4.5722 47 1 0.1549 -8.8227 5.3040 48 1 -0.3711 -8.9265 3.5395 49 1 2.9763 -3.5427 1.1131 50 1 1.7057 -2.8087 2.1206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366967582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:59 Heat of formation + Delta-G solvation = 21.388166 kcal Electronic energy + Delta-G solvation = -26520.187873 eV Core-core repulsion = 23125.058849 eV Total energy + Delta-G solvation = -3395.129024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53202 -39.70714 -38.35977 -35.47410 -34.50904 -33.86572 -33.34930 -30.90990 -29.97122 -28.02682 -27.54093 -25.73524 -25.00237 -23.13225 -22.97830 -22.65420 -21.79934 -21.07600 -20.51936 -18.05578 -17.69810 -17.28994 -16.68843 -16.34509 -15.98809 -15.55610 -15.42939 -15.29178 -15.21253 -15.04873 -14.68294 -14.38162 -13.95408 -13.82645 -13.72298 -13.59604 -13.40438 -13.20946 -13.14888 -13.04262 -12.79448 -12.64258 -12.55897 -12.35407 -11.99370 -11.96821 -11.86039 -11.47639 -11.40760 -11.27750 -11.08844 -10.84223 -10.57520 -10.29734 -10.20742 -9.87330 -9.62776 -8.91839 -8.00872 -6.06609 0.21117 0.41475 1.41606 1.43737 1.50520 2.48633 2.85667 3.27573 3.29134 3.41241 3.62692 3.71128 3.85683 3.97167 4.05281 4.09690 4.18254 4.19933 4.34300 4.37781 4.45223 4.52292 4.56960 4.59910 4.62093 4.65707 4.70693 4.76949 4.79731 4.81039 4.81894 4.87922 5.01127 5.04905 5.12160 5.15914 5.18520 5.22790 5.27678 5.30082 5.32150 5.33111 5.42597 5.46189 5.56562 5.69917 5.74909 5.88581 5.90161 6.44066 6.58241 6.80935 6.95909 7.15236 7.57714 9.07458 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003665 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.421987 B = 7637.080620 C = 8825.838361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.146 4.146 3 C -0.083 4.083 4 C -0.174 4.174 5 C 0.075 3.925 6 N -0.503 5.503 7 C 0.119 3.881 8 C -0.036 4.036 9 H 0.094 0.906 10 C -0.094 4.094 11 C -0.107 4.107 12 C -0.140 4.140 13 C 0.093 3.907 14 H 0.059 0.941 15 N -0.677 5.677 16 C 0.129 3.871 17 C 0.023 3.977 18 C -0.475 4.475 19 H 0.043 0.957 20 C 0.024 3.976 21 N -0.912 5.912 22 Si 0.940 3.060 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.191 4.191 27 C -0.159 4.159 28 C -0.077 4.077 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.336 0.664 42 H 0.036 0.964 43 H 0.011 0.989 44 H 0.255 0.745 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.467 13.707 -17.927 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 C -0.109 4.109 4 C -0.193 4.193 5 C -0.082 4.082 6 N -0.212 5.212 7 C -0.019 4.019 8 C -0.056 4.056 9 H 0.112 0.888 10 C -0.132 4.132 11 C -0.145 4.145 12 C -0.179 4.179 13 C -0.017 4.017 14 H 0.077 0.923 15 N -0.306 5.306 16 C -0.001 4.001 17 C 0.022 3.978 18 C -0.514 4.514 19 H 0.062 0.938 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.767 3.233 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.228 4.228 27 C -0.197 4.197 28 C -0.116 4.116 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.154 0.846 42 H 0.054 0.946 43 H 0.029 0.971 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.543 13.385 -17.350 22.379 hybrid contribution -0.274 0.571 0.617 0.884 sum 4.269 13.956 -16.733 22.204 Atomic orbital electron populations 1.20858 0.89072 1.03675 1.03421 1.21038 0.98712 0.93627 1.01428 1.21857 0.94569 0.98561 0.95901 1.22444 0.95549 1.00114 1.01238 1.23165 1.01243 0.87943 0.95874 1.67402 1.08388 1.32798 1.12577 1.21199 0.89827 0.95069 0.95758 1.20228 0.99034 0.90218 0.96100 0.88765 1.21405 1.00584 0.95731 0.95472 1.21445 1.00145 0.95250 0.97689 1.22205 1.01398 0.98763 0.95570 1.21553 0.98383 0.93416 0.88361 0.92266 1.60203 1.05747 1.27435 1.37218 1.21140 0.93261 0.92199 0.93470 1.18974 0.98638 0.86095 0.94096 1.20463 0.92897 1.29666 1.08327 0.93847 1.25507 0.95205 0.97399 0.99365 1.70106 1.00679 1.44687 1.39678 0.85902 0.77139 0.80185 0.80035 1.20555 1.21120 1.20016 1.22987 0.93536 1.06059 1.00256 1.22367 0.94118 1.04169 0.99064 1.21271 0.99865 0.94308 0.96136 0.89527 0.91502 0.89972 0.82355 0.82042 0.81251 0.91238 0.92291 0.90453 0.91422 0.91879 0.92637 0.84644 0.94563 0.97146 0.93595 0.89340 0.90948 0.92446 0.91140 0.92348 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.28 71.24 0.66 -1.20 16 2 C -0.15 -3.08 5.90 -19.77 -0.12 -3.19 16 3 C -0.08 -1.43 9.84 22.46 0.22 -1.21 16 4 C -0.17 -2.89 10.11 22.36 0.23 -2.67 16 5 C 0.07 1.58 11.18 84.69 0.95 2.52 16 6 N -0.50 -13.56 9.81 -183.89 -1.80 -15.37 16 7 C 0.12 3.03 5.47 42.54 0.23 3.26 16 8 C -0.04 -0.91 2.25 -11.54 -0.03 -0.94 16 9 H 0.09 2.19 5.54 -2.39 -0.01 2.18 16 10 C -0.09 -2.06 5.14 30.60 0.16 -1.90 16 11 C -0.11 -2.25 5.92 30.60 0.18 -2.07 16 12 C -0.14 -3.69 5.17 30.60 0.16 -3.53 16 13 C 0.09 3.03 2.47 44.93 0.11 3.14 16 14 H 0.06 2.06 7.72 -2.39 -0.02 2.04 16 15 N -0.68 -27.01 5.99 -491.51 -2.95 -29.96 16 16 C 0.13 5.75 5.36 86.30 0.46 6.21 16 17 C 0.02 1.12 1.67 -52.93 -0.09 1.03 16 18 C -0.48 -26.73 8.61 25.60 0.22 -26.51 16 19 H 0.04 2.50 7.82 -2.91 -0.02 2.47 16 20 C 0.02 1.36 5.43 84.66 0.46 1.82 16 21 N -0.91 -53.47 12.65 21.45 0.27 -53.20 16 22 Si 0.94 45.67 29.54 68.60 2.03 47.69 16 23 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 26 C -0.19 -8.28 9.94 30.62 0.30 -7.98 16 27 C -0.16 -7.66 9.17 30.62 0.28 -7.38 16 28 C -0.08 -2.44 4.67 30.61 0.14 -2.30 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.25 6.37 -2.38 -0.02 1.23 16 31 H 0.08 1.08 8.06 -2.39 -0.02 1.06 16 32 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 40 H 0.05 1.51 7.55 -2.39 -0.02 1.49 16 41 H 0.34 12.69 8.53 -89.70 -0.76 11.93 16 42 H 0.04 1.83 7.93 -2.39 -0.02 1.82 16 43 H 0.01 0.43 7.53 -2.39 -0.02 0.41 16 44 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 46 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 48 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 49 H 0.06 1.97 7.95 -2.39 -0.02 1.95 16 50 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -65.70 393.91 2.22 -63.48 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.14 Total: 30.25 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 4.53 Total: -42.90 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -4.48 Total: -98.53 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -65.70 2.22 -63.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366967582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.871 kcal (2) G-P(sol) polarization free energy of solvation -65.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds