Wall clock time and date at job start Tue Mar 31 2020 10:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99732 * 2 1 4 4 C 1.52998 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.54550 * 300.00718 * 4 3 2 6 6 N 1.46500 * 109.47528 * 59.81827 * 5 4 3 7 7 C 1.34773 * 120.00431 * 180.02562 * 6 5 4 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00097 * 179.72742 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46983 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99624 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99634 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00657 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99703 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47214 * 90.00059 * 17 15 13 19 19 H 1.48501 * 109.47474 * 210.00166 * 17 15 13 20 20 H 1.48500 * 109.47089 * 330.00544 * 17 15 13 21 21 C 1.53185 * 109.61589 * 60.22665 * 4 3 2 22 22 C 1.53096 * 109.16105 * 176.89394 * 21 4 3 23 23 O 1.42901 * 109.41297 * 302.38799 * 22 21 4 24 24 C 1.42899 * 114.10066 * 61.16614 * 23 22 21 25 25 C 1.53102 * 109.41174 * 298.83962 * 24 23 22 26 26 H 1.09005 * 109.46610 * 299.99040 * 1 2 3 27 27 H 1.08994 * 109.47387 * 59.99574 * 1 2 3 28 28 H 1.09006 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47303 * 60.00889 * 3 2 1 30 30 H 1.09002 * 109.47826 * 300.00264 * 3 2 1 31 31 H 1.09009 * 109.47054 * 299.82122 * 5 4 3 32 32 H 1.08998 * 109.47782 * 179.82583 * 5 4 3 33 33 H 0.97000 * 119.99456 * 0.02562 * 6 5 4 34 34 H 0.97000 * 119.99736 * 0.26819 * 9 7 6 35 35 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 36 36 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 37 37 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 38 38 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 39 39 H 1.08998 * 109.46983 * 299.99930 * 12 11 10 40 40 H 1.08997 * 109.47123 * 59.99717 * 12 11 10 41 41 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.51930 * 296.79640 * 21 4 3 43 43 H 1.08996 * 109.52072 * 56.98706 * 21 4 3 44 44 H 1.09002 * 109.47348 * 182.40713 * 22 21 4 45 45 H 1.09004 * 109.48944 * 62.37988 * 22 21 4 46 46 H 1.08994 * 109.48727 * 178.85781 * 24 23 22 47 47 H 1.09006 * 109.49053 * 58.82217 * 24 23 22 48 48 H 1.09001 * 109.51605 * 297.70273 * 25 24 23 49 49 H 1.08993 * 109.52262 * 177.51304 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9893 0.4253 1.2476 6 7 3.3909 -0.9119 1.2503 7 6 3.6511 -1.7647 2.2610 8 8 4.3828 -1.4243 3.1705 9 7 3.0962 -2.9929 2.2661 10 6 3.3742 -3.9176 3.3679 11 6 2.6267 -5.2316 3.1318 12 6 2.9176 -6.1976 4.2822 13 6 2.1808 -7.4915 4.0499 14 1 1.5662 -7.6125 3.1701 15 6 2.2913 -8.5207 4.9607 16 7 3.0393 -8.3731 6.0323 17 14 1.3786 -10.1249 4.6725 18 1 2.2400 -11.0518 3.8952 19 1 1.0393 -10.7431 5.9794 20 1 0.1310 -9.8551 3.9137 21 6 3.9910 0.4301 -1.2534 22 6 5.5210 0.3829 -1.2831 23 8 6.0379 1.7148 -1.2542 24 6 5.6837 2.4530 -0.0830 25 6 4.1602 2.5833 -0.0050 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6887 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.6714 0.9673 2.1383 32 1 5.0757 0.3372 1.2445 33 1 2.8075 -1.1836 0.5245 34 1 2.5127 -3.2645 1.5404 35 1 4.4455 -4.1125 3.4172 36 1 3.0420 -3.4746 4.3067 37 1 1.5554 -5.0363 3.0829 38 1 2.9585 -5.6747 2.1929 39 1 3.9888 -6.3927 4.3307 40 1 2.5861 -5.7546 5.2212 41 1 3.1173 -9.0973 6.6728 42 1 3.5956 -0.5855 -1.2308 43 1 3.6252 0.9448 -2.1419 44 1 5.8516 -0.1157 -2.1942 45 1 5.8847 -0.1672 -0.4151 46 1 6.1314 3.4456 -0.1295 47 1 6.0494 1.9302 0.8009 48 1 3.7978 3.1414 -0.8683 49 1 3.8858 3.1076 0.9103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368304220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:29 Heat of formation + Delta-G solvation = -138.440767 kcal Electronic energy + Delta-G solvation = -27179.125001 eV Core-core repulsion = 23333.923260 eV Total energy + Delta-G solvation = -3845.201741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87339 -39.29883 -38.14887 -35.86231 -35.11587 -33.43407 -33.06503 -31.50504 -30.98671 -28.62130 -27.28099 -26.40193 -25.55488 -24.03364 -23.08151 -22.83149 -20.69585 -20.26151 -19.40209 -17.93194 -16.85988 -16.62980 -16.53854 -16.27740 -16.21668 -15.83890 -15.50332 -15.14574 -15.00997 -14.60031 -14.37997 -14.27534 -14.04527 -13.62977 -13.52636 -13.08858 -12.77598 -12.53445 -12.25003 -12.12196 -11.94032 -11.74499 -11.71150 -11.58019 -11.27888 -11.00164 -10.87803 -10.66895 -10.60823 -10.56029 -10.09567 -9.94155 -9.81175 -9.78985 -9.39106 -9.09073 -8.98052 -8.42582 -8.34557 -5.99236 -4.02187 2.88288 3.30847 3.32202 3.38473 3.41338 3.53981 3.55771 4.12196 4.22562 4.36138 4.46019 4.59287 4.65964 4.69295 4.86367 4.88183 4.89780 5.01769 5.08228 5.15430 5.21845 5.27794 5.33605 5.36409 5.37826 5.41955 5.48999 5.59218 5.69988 5.73052 5.80306 5.87634 5.88765 6.25602 6.62911 6.67955 6.68994 6.71182 6.85828 6.92608 7.09362 7.32296 7.67379 7.80926 8.00201 8.36983 8.41331 8.93760 9.04693 9.61748 11.12122 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.002337 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.020398 B =11980.064546 C =12555.751693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.075 3.925 4 C -0.072 4.072 5 C 0.150 3.850 6 N -0.738 5.738 7 C 0.698 3.302 8 O -0.602 6.602 9 N -0.742 5.742 10 C 0.136 3.864 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.139 4.139 22 C 0.056 3.944 23 O -0.382 6.382 24 C 0.057 3.943 25 C -0.141 4.141 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.404 0.596 34 H 0.393 0.607 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.058 0.942 48 H 0.079 0.921 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 24.811 -17.368 30.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.002 4.002 4 C -0.072 4.072 5 C 0.025 3.975 6 N -0.401 5.401 7 C 0.397 3.603 8 O -0.481 6.481 9 N -0.396 5.396 10 C 0.013 3.987 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.177 4.177 22 C -0.021 4.021 23 O -0.301 6.301 24 C -0.019 4.019 25 C -0.179 4.179 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.226 0.774 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.604 24.924 -16.505 29.900 hybrid contribution -1.547 -1.055 -0.459 1.928 sum -2.152 23.869 -16.964 29.362 Atomic orbital electron populations 1.22766 0.80370 1.03217 0.99962 1.87568 1.20117 1.27764 1.95369 1.22563 0.92168 0.84948 1.00525 1.20949 0.93884 0.96232 0.96143 1.21140 0.97775 0.82595 0.95987 1.45308 1.53891 1.14368 1.26498 1.16064 0.80828 0.80837 0.82535 1.90898 1.42132 1.77360 1.37703 1.45337 1.52627 1.13973 1.27711 1.21466 1.00365 0.88879 0.88018 1.21880 0.98752 0.93460 1.01676 1.19028 0.97329 0.92725 0.92308 1.21211 1.28811 0.98739 1.07186 0.92677 1.25032 0.95507 0.98781 0.95185 1.69966 1.39259 1.32757 1.11332 0.86587 0.80108 0.83757 0.77480 1.20671 1.21229 1.19929 1.22168 0.96780 1.01828 0.96927 1.22668 0.92762 0.83952 1.02690 1.87934 1.74634 1.25789 1.41730 1.22625 0.93540 0.97087 0.88695 1.22140 0.96978 0.95142 1.03622 0.93931 0.94061 0.89251 0.92797 0.92895 0.91943 0.91622 0.75484 0.77433 0.92106 0.92151 0.92852 0.92826 0.96256 0.96275 0.92948 0.89916 0.90850 0.88700 0.92473 0.88533 0.92421 0.90248 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.08 6.81 -35.23 -0.24 -3.32 16 3 C 0.07 0.51 4.82 37.16 0.18 0.68 16 4 C -0.07 -0.52 0.51 -154.32 -0.08 -0.60 16 5 C 0.15 1.56 4.01 -4.04 -0.02 1.55 16 6 N -0.74 -8.87 4.61 -65.22 -0.30 -9.17 16 7 C 0.70 11.39 8.57 -86.92 -0.74 10.65 16 8 O -0.60 -12.37 16.34 5.28 0.09 -12.29 16 9 N -0.74 -11.53 5.56 -65.22 -0.36 -11.89 16 10 C 0.14 2.54 5.67 -4.04 -0.02 2.51 16 11 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.14 -1.03 4.61 -26.59 -0.12 -1.15 16 22 C 0.06 0.46 6.57 37.21 0.24 0.71 16 23 O -0.38 -3.54 10.76 -35.23 -0.38 -3.92 16 24 C 0.06 0.41 6.57 37.21 0.24 0.65 16 25 C -0.14 -0.83 4.92 -26.59 -0.13 -0.96 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.07 0.75 5.01 -51.93 -0.26 0.49 16 33 H 0.40 4.22 4.71 -40.82 -0.19 4.03 16 34 H 0.39 5.03 8.49 -40.82 -0.35 4.68 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.08 0.65 6.55 -51.93 -0.34 0.31 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.54 6.60 -51.93 -0.34 0.20 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.44 6.61 -51.93 -0.34 0.10 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -34.13 382.72 -8.29 -42.43 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.55 Total: 2.36 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.03 Total: -0.22 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.07 Total: -47.43 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.53 Total: -19.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.13 -8.29 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368304220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.014 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds