Wall clock time and date at job start Tue Mar 31 2020 10:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 113.99898 * 2 1 4 4 C 1.53007 * 109.46826 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46776 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47136 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99844 * 270.00183 * 6 5 4 8 8 C 1.53000 * 109.47012 * 264.41312 * 7 6 5 9 9 O 1.42896 * 109.47060 * 62.92827 * 8 7 6 10 10 C 1.42901 * 114.00228 * 180.02562 * 9 8 7 11 11 C 1.34774 * 119.99648 * 89.99785 * 6 5 4 12 12 O 1.21582 * 120.00540 * 5.39304 * 11 6 5 13 13 N 1.34778 * 120.00004 * 185.38569 * 11 6 5 14 14 C 1.46499 * 120.00195 * 175.82116 * 13 11 6 15 15 C 1.53001 * 109.46865 * 184.87884 * 14 13 11 16 16 C 1.50703 * 115.55098 * 304.84296 * 15 14 13 17 17 H 1.08000 * 119.99827 * 144.51263 * 16 15 14 18 18 C 1.37872 * 120.00010 * 324.50506 * 16 15 14 19 19 N 1.31519 * 119.99787 * 167.53180 * 18 16 15 20 20 Si 1.86801 * 120.00229 * 347.53961 * 18 16 15 21 21 H 1.48499 * 109.47365 * 95.73102 * 20 18 16 22 22 H 1.48506 * 109.47005 * 215.73526 * 20 18 16 23 23 H 1.48500 * 109.46873 * 335.72919 * 20 18 16 24 24 C 1.53000 * 117.49726 * 159.17714 * 15 14 13 25 25 C 1.53000 * 117.50022 * 90.51791 * 15 14 13 26 26 H 1.09007 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47357 * 300.00209 * 1 2 3 28 28 H 1.09005 * 109.47325 * 60.00321 * 1 2 3 29 29 H 1.08996 * 109.46910 * 60.00140 * 3 2 1 30 30 H 1.09002 * 109.46972 * 299.99606 * 3 2 1 31 31 H 1.09001 * 109.46881 * 60.00023 * 4 3 2 32 32 H 1.09002 * 109.47224 * 299.99697 * 4 3 2 33 33 H 1.09004 * 109.47185 * 59.99884 * 5 4 3 34 34 H 1.09002 * 109.47042 * 299.99864 * 5 4 3 35 35 H 1.08996 * 109.47336 * 24.41712 * 7 6 5 36 36 H 1.09006 * 109.47106 * 144.41641 * 7 6 5 37 37 H 1.09000 * 109.47368 * 182.92405 * 8 7 6 38 38 H 1.09007 * 109.47327 * 302.93061 * 8 7 6 39 39 H 1.08994 * 109.47494 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.47094 * 300.00154 * 10 9 8 41 41 H 1.09007 * 109.47390 * 59.99483 * 10 9 8 42 42 H 0.97005 * 119.99875 * 355.54704 * 13 11 6 43 43 H 1.08991 * 109.47316 * 304.87458 * 14 13 11 44 44 H 1.09000 * 109.47394 * 64.88373 * 14 13 11 45 45 H 0.97001 * 119.99637 * 180.02562 * 19 18 16 46 46 H 1.08997 * 117.50125 * 359.97438 * 24 15 14 47 47 H 1.09003 * 117.50441 * 145.02123 * 24 15 14 48 48 H 1.09001 * 117.49640 * 214.97667 * 25 15 14 49 49 H 1.09000 * 117.49468 * 359.97055 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6181 2.4667 0.0012 7 6 6.3473 2.4099 1.2706 8 6 6.8357 3.8116 1.6413 9 8 5.7113 4.6703 1.8417 10 6 6.0591 6.0110 2.1935 11 6 6.2907 2.4125 -1.1654 12 8 5.6974 2.5580 -2.2166 13 7 7.6212 2.1973 -1.1669 14 6 8.3376 2.0471 -2.4359 15 6 9.7999 1.6938 -2.1572 16 6 10.5396 2.6500 -1.2575 17 1 11.2802 2.2771 -0.5655 18 6 10.2710 4.0010 -1.3178 19 7 10.7243 4.8041 -0.3801 20 14 9.2630 4.6907 -2.7312 21 1 7.8414 4.8027 -2.3170 22 1 9.7791 6.0341 -3.0979 23 1 9.3674 3.7837 -3.9024 24 6 10.5925 1.0270 -3.2833 25 6 10.1626 0.2104 -2.0621 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8573 0.6436 -0.8891 32 1 3.8567 0.6439 0.8909 33 1 3.8357 3.1239 0.8895 34 1 3.8364 3.1227 -0.8905 35 1 5.6864 2.0367 2.0529 36 1 7.2029 1.7422 1.1686 37 1 7.4224 3.7612 2.5586 38 1 7.4547 4.2058 0.8352 39 1 5.1510 6.5987 2.3276 40 1 6.6300 6.0065 3.1221 41 1 6.6619 6.4505 1.3986 42 1 8.1051 2.1458 -0.3277 43 1 7.8769 1.2515 -3.0212 44 1 8.2898 2.9827 -2.9931 45 1 10.5349 5.7545 -0.4223 46 1 10.0721 0.8397 -4.2225 47 1 11.6491 1.2796 -3.3732 48 1 10.9364 -0.0737 -1.3490 49 1 9.3592 -0.5137 -2.1975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431118003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:53 Heat of formation + Delta-G solvation = -81.228079 kcal Electronic energy + Delta-G solvation = -28135.866052 eV Core-core repulsion = 24293.145239 eV Total energy + Delta-G solvation = -3842.720813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.92655 -38.07691 -37.72062 -37.12245 -35.40495 -33.70292 -32.34446 -32.19656 -29.45121 -27.54413 -26.64300 -26.14628 -25.34875 -24.22509 -22.83214 -21.71673 -21.43269 -19.49043 -19.05132 -17.86101 -16.86508 -16.41691 -16.20878 -16.18732 -15.95859 -15.62162 -15.34959 -15.15346 -14.86145 -14.36498 -14.14416 -13.94672 -13.68087 -13.20221 -12.98550 -12.72319 -12.53068 -12.20133 -12.06279 -12.03766 -11.90992 -11.82190 -11.69693 -11.14961 -11.07152 -10.98426 -10.67572 -10.65371 -10.49819 -9.95874 -9.79817 -9.74259 -9.51344 -9.44046 -9.33727 -8.98700 -8.48377 -8.45229 -7.95100 -6.29676 -4.24177 3.01238 3.30547 3.37764 3.42363 3.61255 3.77658 3.94668 4.30992 4.40018 4.78537 4.94226 4.98903 5.14512 5.16647 5.21418 5.24525 5.30172 5.32144 5.39175 5.42725 5.47290 5.51479 5.58125 5.60914 5.66537 5.69917 5.77193 5.82778 5.91238 6.04373 6.11753 6.16431 6.25648 6.29769 6.46759 6.50327 6.65414 6.80002 6.88052 7.03054 7.09080 7.23646 7.26555 7.44358 7.60713 8.34907 8.56067 8.76419 9.16076 9.36119 10.80529 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.004494 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.970510 B = 6228.562278 C = 7523.208942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.066 3.934 4 C -0.135 4.135 5 C 0.144 3.856 6 N -0.624 5.624 7 C 0.116 3.884 8 C 0.037 3.963 9 O -0.389 6.389 10 C 0.034 3.966 11 C 0.703 3.297 12 O -0.602 6.602 13 N -0.720 5.720 14 C 0.159 3.841 15 C -0.007 4.007 16 C -0.489 4.489 17 H 0.080 0.920 18 C 0.087 3.913 19 N -0.884 5.884 20 Si 0.882 3.118 21 H -0.274 1.274 22 H -0.301 1.301 23 H -0.262 1.262 24 C -0.199 4.199 25 C -0.186 4.186 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.406 0.594 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.265 0.735 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.227 -3.801 6.142 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.011 4.011 4 C -0.174 4.174 5 C 0.020 3.980 6 N -0.360 5.360 7 C -0.008 4.008 8 C -0.041 4.041 9 O -0.308 6.308 10 C -0.063 4.063 11 C 0.404 3.596 12 O -0.481 6.481 13 N -0.375 5.375 14 C 0.035 3.965 15 C -0.009 4.009 16 C -0.526 4.526 17 H 0.098 0.902 18 C -0.117 4.117 19 N -0.520 5.520 20 Si 0.714 3.286 21 H -0.200 1.200 22 H -0.230 1.230 23 H -0.188 1.188 24 C -0.238 4.238 25 C -0.224 4.224 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.244 0.756 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.690 -3.739 5.431 16.101 hybrid contribution -0.067 0.878 -0.308 0.933 sum -14.757 -2.861 5.122 15.881 Atomic orbital electron populations 1.22719 0.81294 1.02559 0.99888 1.87883 1.19490 1.28372 1.95420 1.22446 0.94070 0.84416 1.00200 1.21949 0.92691 0.99096 1.03668 1.21045 0.78455 0.95086 1.03460 1.46891 1.06349 1.78500 1.04300 1.21565 0.97738 0.95160 0.86351 1.23151 0.88810 0.91211 1.00942 1.87794 1.31775 1.20626 1.90606 1.22687 1.00994 0.83646 0.98988 1.15955 0.82158 0.77912 0.83581 1.90841 1.68614 1.58406 1.30243 1.45227 1.05480 1.75918 1.10918 1.21129 0.91109 1.00053 0.84217 1.19546 0.90706 0.92369 0.98253 1.20316 1.22403 0.89951 1.19927 0.90194 1.24905 0.94994 0.96858 0.94988 1.69932 1.45663 1.04713 1.31687 0.87037 0.80341 0.77095 0.84153 1.20011 1.22982 1.18839 1.23097 1.01006 1.07396 0.92305 1.22825 1.02896 0.95120 1.01532 0.89806 0.94187 0.94135 0.93252 0.93100 0.90745 0.91201 0.90052 0.90027 0.89429 0.88940 0.92090 0.91796 0.90118 0.94185 0.94005 0.75645 0.92835 0.92644 0.92477 0.91185 0.89369 0.89827 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.87 10.70 -35.23 -0.38 -5.25 16 3 C 0.07 0.75 5.94 37.16 0.22 0.97 16 4 C -0.14 -1.75 5.91 -26.73 -0.16 -1.91 16 5 C 0.14 2.04 5.29 -4.04 -0.02 2.02 16 6 N -0.62 -10.28 2.40 -179.42 -0.43 -10.71 16 7 C 0.12 1.60 5.53 -4.04 -0.02 1.57 16 8 C 0.04 0.56 6.25 37.16 0.23 0.79 16 9 O -0.39 -5.80 10.04 -35.23 -0.35 -6.15 16 10 C 0.03 0.43 11.01 101.05 1.11 1.54 16 11 C 0.70 14.51 8.23 -86.92 -0.72 13.80 16 12 O -0.60 -14.37 15.90 5.29 0.08 -14.29 16 13 N -0.72 -14.98 4.88 -65.23 -0.32 -15.30 16 14 C 0.16 3.55 4.35 -4.04 -0.02 3.53 16 15 C -0.01 -0.17 1.45 -155.66 -0.23 -0.39 16 16 C -0.49 -12.55 8.84 -34.44 -0.30 -12.85 16 17 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 18 C 0.09 2.31 5.37 -17.82 -0.10 2.22 16 19 N -0.88 -24.59 13.96 55.43 0.77 -23.82 16 20 Si 0.88 22.18 23.94 -169.99 -4.07 18.11 16 21 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 23 H -0.26 -6.47 6.40 56.52 0.36 -6.11 16 24 C -0.20 -4.07 9.96 -26.69 -0.27 -4.33 16 25 C -0.19 -3.61 9.93 -26.69 -0.27 -3.88 16 26 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.02 7.62 -51.93 -0.40 0.63 16 34 H 0.08 1.31 7.36 -51.93 -0.38 0.92 16 35 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 36 H 0.09 1.23 6.52 -51.93 -0.34 0.89 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.41 8.08 5.76 -40.82 -0.24 7.84 16 43 H 0.05 1.15 8.09 -51.93 -0.42 0.73 16 44 H 0.06 1.37 2.58 -51.93 -0.13 1.24 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 48 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 49 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -31.54 394.10 -6.85 -38.39 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -8.68 Total: 8.61 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 0.59 Total: 4.45 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.02 Total: -49.82 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.65 Total: -25.69 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.07 Total: 18.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.54 -6.85 -38.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431118003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.837 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds