Wall clock time and date at job start Tue Mar 31 2020 10:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 113.99898 * 2 1 4 4 C 1.53007 * 109.46826 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46776 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47136 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99844 * 270.00183 * 6 5 4 8 8 C 1.53000 * 109.47012 * 264.41312 * 7 6 5 9 9 O 1.42896 * 109.47060 * 62.92827 * 8 7 6 10 10 C 1.42901 * 114.00228 * 180.02562 * 9 8 7 11 11 C 1.34774 * 119.99648 * 89.99785 * 6 5 4 12 12 O 1.21582 * 120.00540 * 5.39304 * 11 6 5 13 13 N 1.34778 * 120.00004 * 185.38569 * 11 6 5 14 14 C 1.46499 * 120.00195 * 175.82116 * 13 11 6 15 15 C 1.53001 * 109.46865 * 184.87884 * 14 13 11 16 16 C 1.50703 * 115.55098 * 304.84296 * 15 14 13 17 17 H 1.08000 * 119.99827 * 144.51263 * 16 15 14 18 18 C 1.37872 * 120.00010 * 324.50506 * 16 15 14 19 19 N 1.31519 * 119.99787 * 167.53180 * 18 16 15 20 20 Si 1.86801 * 120.00229 * 347.53961 * 18 16 15 21 21 H 1.48499 * 109.47365 * 95.73102 * 20 18 16 22 22 H 1.48506 * 109.47005 * 215.73526 * 20 18 16 23 23 H 1.48500 * 109.46873 * 335.72919 * 20 18 16 24 24 C 1.53000 * 117.49726 * 159.17714 * 15 14 13 25 25 C 1.53000 * 117.50022 * 90.51791 * 15 14 13 26 26 H 1.09007 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47357 * 300.00209 * 1 2 3 28 28 H 1.09005 * 109.47325 * 60.00321 * 1 2 3 29 29 H 1.08996 * 109.46910 * 60.00140 * 3 2 1 30 30 H 1.09002 * 109.46972 * 299.99606 * 3 2 1 31 31 H 1.09001 * 109.46881 * 60.00023 * 4 3 2 32 32 H 1.09002 * 109.47224 * 299.99697 * 4 3 2 33 33 H 1.09004 * 109.47185 * 59.99884 * 5 4 3 34 34 H 1.09002 * 109.47042 * 299.99864 * 5 4 3 35 35 H 1.08996 * 109.47336 * 24.41712 * 7 6 5 36 36 H 1.09006 * 109.47106 * 144.41641 * 7 6 5 37 37 H 1.09000 * 109.47368 * 182.92405 * 8 7 6 38 38 H 1.09007 * 109.47327 * 302.93061 * 8 7 6 39 39 H 1.08994 * 109.47494 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.47094 * 300.00154 * 10 9 8 41 41 H 1.09007 * 109.47390 * 59.99483 * 10 9 8 42 42 H 0.97005 * 119.99875 * 355.54704 * 13 11 6 43 43 H 1.08991 * 109.47316 * 304.87458 * 14 13 11 44 44 H 1.09000 * 109.47394 * 64.88373 * 14 13 11 45 45 H 0.97001 * 119.99637 * 180.02562 * 19 18 16 46 46 H 1.08997 * 117.50125 * 359.97438 * 24 15 14 47 47 H 1.09003 * 117.50441 * 145.02123 * 24 15 14 48 48 H 1.09001 * 117.49640 * 214.97667 * 25 15 14 49 49 H 1.09000 * 117.49468 * 359.97055 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6181 2.4667 0.0012 7 6 6.3473 2.4099 1.2706 8 6 6.8357 3.8116 1.6413 9 8 5.7113 4.6703 1.8417 10 6 6.0591 6.0110 2.1935 11 6 6.2907 2.4125 -1.1654 12 8 5.6974 2.5580 -2.2166 13 7 7.6212 2.1973 -1.1669 14 6 8.3376 2.0471 -2.4359 15 6 9.7999 1.6938 -2.1572 16 6 10.5396 2.6500 -1.2575 17 1 11.2802 2.2771 -0.5655 18 6 10.2710 4.0010 -1.3178 19 7 10.7243 4.8041 -0.3801 20 14 9.2630 4.6907 -2.7312 21 1 7.8414 4.8027 -2.3170 22 1 9.7791 6.0341 -3.0979 23 1 9.3674 3.7837 -3.9024 24 6 10.5925 1.0270 -3.2833 25 6 10.1626 0.2104 -2.0621 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8573 0.6436 -0.8891 32 1 3.8567 0.6439 0.8909 33 1 3.8357 3.1239 0.8895 34 1 3.8364 3.1227 -0.8905 35 1 5.6864 2.0367 2.0529 36 1 7.2029 1.7422 1.1686 37 1 7.4224 3.7612 2.5586 38 1 7.4547 4.2058 0.8352 39 1 5.1510 6.5987 2.3276 40 1 6.6300 6.0065 3.1221 41 1 6.6619 6.4505 1.3986 42 1 8.1051 2.1458 -0.3277 43 1 7.8769 1.2515 -3.0212 44 1 8.2898 2.9827 -2.9931 45 1 10.5349 5.7545 -0.4223 46 1 10.0721 0.8397 -4.2225 47 1 11.6491 1.2796 -3.3732 48 1 10.9364 -0.0737 -1.3490 49 1 9.3592 -0.5137 -2.1975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431118003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:52 Heat of formation + Delta-G solvation = -102.930017 kcal Electronic energy + Delta-G solvation = -28136.807118 eV Core-core repulsion = 24293.145239 eV Total energy + Delta-G solvation = -3843.661880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43714 -39.18648 -38.85424 -38.65576 -36.77204 -35.25384 -34.35805 -33.42322 -30.64024 -28.97510 -27.86306 -27.20596 -26.99869 -25.42775 -24.09618 -23.10724 -22.72776 -21.26955 -20.60925 -19.37022 -18.37361 -17.83956 -17.58445 -17.24811 -17.09279 -17.04984 -16.75973 -16.33849 -15.94228 -15.82708 -15.57237 -15.24958 -15.08437 -14.84916 -14.62812 -14.29982 -13.93831 -13.68545 -13.45988 -13.08305 -13.03227 -12.93913 -12.86971 -12.63134 -12.55585 -12.15719 -12.13831 -12.02810 -11.84635 -11.75838 -11.51774 -11.32598 -11.15940 -10.76281 -10.67222 -10.61325 -10.40385 -10.03951 -9.47729 -8.39550 -6.31575 1.25270 1.33540 1.36298 1.64818 2.09981 2.24405 2.73668 2.77944 2.89889 3.08913 3.48864 3.92412 3.97099 4.03915 4.09852 4.15378 4.19788 4.31214 4.34232 4.41273 4.45593 4.48177 4.49007 4.50407 4.53231 4.54228 4.57184 4.59358 4.72664 4.77231 4.79435 4.84612 4.85954 4.93654 4.95746 5.07856 5.19693 5.22479 5.50620 5.55750 5.60825 5.67717 5.93125 6.14853 6.24162 6.29534 6.67364 7.01363 7.28922 7.56272 8.74158 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.004494 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.970510 B = 6228.562278 C = 7523.208942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.068 3.932 4 C -0.123 4.123 5 C 0.145 3.855 6 N -0.618 5.618 7 C 0.114 3.886 8 C 0.041 3.959 9 O -0.396 6.396 10 C 0.029 3.971 11 C 0.696 3.304 12 O -0.640 6.640 13 N -0.719 5.719 14 C 0.164 3.836 15 C -0.037 4.037 16 C -0.476 4.476 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.917 5.917 20 Si 0.925 3.075 21 H -0.296 1.296 22 H -0.308 1.308 23 H -0.254 1.254 24 C -0.192 4.192 25 C -0.159 4.159 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.019 0.981 39 H 0.105 0.895 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.409 0.591 43 H 0.063 0.937 44 H 0.030 0.970 45 H 0.265 0.735 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.519 -5.262 7.199 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.009 4.009 4 C -0.162 4.162 5 C 0.022 3.978 6 N -0.353 5.353 7 C -0.009 4.009 8 C -0.037 4.037 9 O -0.315 6.315 10 C -0.067 4.067 11 C 0.398 3.602 12 O -0.523 6.523 13 N -0.375 5.375 14 C 0.039 3.961 15 C -0.038 4.038 16 C -0.513 4.513 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.555 5.555 20 Si 0.757 3.243 21 H -0.224 1.224 22 H -0.237 1.237 23 H -0.180 1.180 24 C -0.231 4.231 25 C -0.196 4.196 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.037 0.963 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.247 0.753 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.986 -5.215 6.510 18.031 hybrid contribution 0.304 1.303 -0.587 1.461 sum -15.682 -3.912 5.923 17.213 Atomic orbital electron populations 1.22928 0.79417 1.03788 1.00921 1.87833 1.21609 1.28818 1.95636 1.22409 0.92719 0.84476 1.01259 1.21785 0.94086 0.97674 1.02669 1.21164 0.77127 0.96047 1.03487 1.46997 1.07274 1.77049 1.03991 1.21804 0.98602 0.94605 0.85841 1.23075 0.88721 0.91667 1.00221 1.87767 1.31682 1.21425 1.90667 1.22848 1.02232 0.82843 0.98801 1.16181 0.82038 0.77721 0.84300 1.90803 1.69266 1.60141 1.32058 1.45147 1.05678 1.76069 1.10587 1.20981 0.91351 0.98944 0.84784 1.19452 0.90534 0.93926 0.99883 1.20397 1.21332 0.90225 1.19378 0.92583 1.25203 0.95795 0.97329 0.95848 1.69986 1.47637 1.04878 1.33004 0.86389 0.78124 0.76394 0.83351 1.22432 1.23746 1.17967 1.23139 1.00684 1.06254 0.93012 1.22863 1.03052 0.93169 1.00506 0.88599 0.92610 0.93613 0.90885 0.93320 0.93771 0.90035 0.87603 0.92269 0.85685 0.88472 0.90147 0.96271 0.87632 0.92601 0.96236 0.75273 0.91900 0.95230 0.92600 0.89337 0.89536 0.89333 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.69 10.70 -148.98 -1.59 -11.28 16 3 C 0.07 1.43 5.94 71.98 0.43 1.85 16 4 C -0.12 -3.04 5.91 30.60 0.18 -2.86 16 5 C 0.14 3.97 5.29 86.38 0.46 4.42 16 6 N -0.62 -19.93 2.40 -839.84 -2.02 -21.95 16 7 C 0.11 2.95 5.53 86.38 0.48 3.43 16 8 C 0.04 1.21 6.25 71.98 0.45 1.66 16 9 O -0.40 -11.27 10.04 -148.98 -1.50 -12.77 16 10 C 0.03 0.71 11.01 113.37 1.25 1.96 16 11 C 0.70 28.97 8.23 179.05 1.47 30.44 16 12 O -0.64 -31.21 15.90 -3.97 -0.06 -31.28 16 13 N -0.72 -29.95 4.88 -478.55 -2.34 -32.29 16 14 C 0.16 7.24 4.35 86.38 0.38 7.62 16 15 C -0.04 -1.59 1.45 -52.93 -0.08 -1.67 16 16 C -0.48 -24.43 8.84 25.60 0.23 -24.21 16 17 H 0.06 3.12 8.06 -2.91 -0.02 3.10 16 18 C 0.06 3.19 5.37 84.65 0.45 3.65 16 19 N -0.92 -52.12 13.96 21.45 0.30 -51.82 16 20 Si 0.92 47.02 23.94 68.60 1.64 48.66 16 21 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 22 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 23 H -0.25 -12.42 6.40 99.48 0.64 -11.78 16 24 C -0.19 -7.38 9.96 30.62 0.30 -7.07 16 25 C -0.16 -5.71 9.93 30.62 0.30 -5.41 16 26 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 2.39 7.62 -2.38 -0.02 2.37 16 34 H 0.06 1.90 7.36 -2.39 -0.02 1.89 16 35 H 0.13 2.34 8.03 -2.39 -0.02 2.32 16 36 H 0.10 2.43 6.52 -2.38 -0.02 2.42 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.41 16.28 5.76 -92.70 -0.53 15.75 16 43 H 0.06 2.64 8.09 -2.39 -0.02 2.62 16 44 H 0.03 1.48 2.58 -2.39 -0.01 1.48 16 45 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 47 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 48 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 49 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -69.42 394.10 2.30 -67.12 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.32 Total: 30.15 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 7.55 Total: 15.45 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.06 Total: -106.06 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -3.15 Total: -55.32 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.64 Total: 48.66 kcal Total: -69.42 2.30 -67.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431118003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.810 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds