Wall clock time and date at job start Tue Mar 31 2020 10:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99885 * 2 1 4 4 C 1.52995 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47220 * 179.97438 * 4 3 2 6 6 O 1.42893 * 109.47214 * 180.02562 * 5 4 3 7 7 C 1.42905 * 113.99988 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47134 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.46487 * 65.00419 * 8 7 6 10 10 C 1.46501 * 119.99971 * 269.99388 * 9 8 7 11 11 C 1.34774 * 119.99859 * 90.00390 * 9 8 7 12 12 O 1.21585 * 120.00301 * 4.62439 * 11 9 8 13 13 N 1.34774 * 119.99685 * 184.63200 * 11 9 8 14 14 C 1.46500 * 120.00215 * 174.92675 * 13 11 9 15 15 C 1.53001 * 109.47640 * 184.60581 * 14 13 11 16 16 C 1.50702 * 115.54657 * 306.48420 * 15 14 13 17 17 H 1.08004 * 119.99364 * 144.25174 * 16 15 14 18 18 C 1.37875 * 120.00460 * 324.25410 * 16 15 14 19 19 N 1.31515 * 119.99501 * 3.35925 * 18 16 15 20 20 Si 1.86798 * 120.00140 * 183.36729 * 18 16 15 21 21 H 1.48500 * 109.47099 * 89.99662 * 20 18 16 22 22 H 1.48500 * 109.47116 * 209.99949 * 20 18 16 23 23 H 1.48497 * 109.46974 * 329.99573 * 20 18 16 24 24 C 1.52999 * 117.50095 * 160.81384 * 15 14 13 25 25 C 1.52997 * 117.49895 * 92.15207 * 15 14 13 26 26 H 1.09000 * 109.47250 * 60.00689 * 1 2 3 27 27 H 1.09007 * 109.46508 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47284 * 300.00155 * 1 2 3 29 29 H 1.08999 * 109.47400 * 59.99285 * 3 2 1 30 30 H 1.09003 * 109.46663 * 300.00147 * 3 2 1 31 31 H 1.08995 * 109.47527 * 59.99887 * 4 3 2 32 32 H 1.08997 * 109.47071 * 299.99735 * 4 3 2 33 33 H 1.08999 * 109.47366 * 59.99519 * 5 4 3 34 34 H 1.09010 * 109.46651 * 299.99981 * 5 4 3 35 35 H 1.09001 * 109.46790 * 60.00393 * 7 6 5 36 36 H 1.08999 * 109.47400 * 299.99908 * 7 6 5 37 37 H 1.08997 * 109.47302 * 305.00516 * 8 7 6 38 38 H 1.08993 * 109.47000 * 184.99876 * 8 7 6 39 39 H 1.08996 * 109.47009 * 264.32276 * 10 9 8 40 40 H 1.09004 * 109.46849 * 24.32122 * 10 9 8 41 41 H 1.08997 * 109.46961 * 144.31564 * 10 9 8 42 42 H 0.97002 * 120.00157 * 354.65454 * 13 11 9 43 43 H 1.09000 * 109.47247 * 304.61397 * 14 13 11 44 44 H 1.09003 * 109.46929 * 64.60860 * 14 13 11 45 45 H 0.97009 * 119.99602 * 185.00491 * 19 18 16 46 46 H 1.09005 * 117.49383 * 0.02562 * 24 15 14 47 47 H 1.08995 * 117.49725 * 145.02034 * 24 15 14 48 48 H 1.08999 * 117.50231 * 214.98654 * 25 15 14 49 49 H 1.09007 * 117.49462 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0000 6 8 5.5821 2.4698 0.0000 7 6 6.2646 3.7254 -0.0012 8 6 7.7755 3.4846 -0.0004 9 7 8.1662 2.8300 -1.2515 10 6 8.1805 1.3677 -1.3397 11 6 8.5126 3.5730 -2.3212 12 8 8.5824 4.7830 -2.2242 13 7 8.7815 2.9748 -3.4986 14 6 9.0492 3.7865 -4.6885 15 6 9.2090 2.8720 -5.9046 16 6 10.2238 1.7675 -5.7582 17 1 10.0429 0.8044 -6.2123 18 6 11.3830 1.9863 -5.0445 19 7 11.5732 3.1367 -4.4361 20 14 12.6832 0.6491 -4.9419 21 1 13.6409 0.8026 -6.0664 22 1 13.4110 0.7642 -3.6526 23 1 12.0314 -0.6825 -5.0250 24 6 9.0458 3.5024 -7.2890 25 6 7.9590 2.5772 -6.7360 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8464 -0.8900 31 1 3.8575 0.6437 -0.8890 32 1 3.8567 0.6441 0.8909 33 1 3.8356 3.1241 0.8895 34 1 3.8363 3.1229 -0.8906 35 1 5.9867 4.2907 0.8884 36 1 5.9866 4.2892 -0.8916 37 1 8.0413 2.8462 0.8421 38 1 8.2954 4.4384 0.0882 39 1 9.1895 1.0021 -1.1492 40 1 7.4976 0.9523 -0.5986 41 1 7.8650 1.0607 -2.3368 42 1 8.8018 2.0068 -3.5574 43 1 8.2178 4.4714 -4.8556 44 1 9.9659 4.3573 -4.5402 45 1 12.4181 3.3183 -3.9953 46 1 8.8250 4.5689 -7.3334 47 1 9.6721 3.1181 -8.0940 48 1 7.8706 1.5845 -7.1774 49 1 7.0226 3.0345 -6.4163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431189044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:04 Heat of formation + Delta-G solvation = -93.006263 kcal Electronic energy + Delta-G solvation = -27015.525521 eV Core-core repulsion = 23172.293968 eV Total energy + Delta-G solvation = -3843.231553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.41647 -38.48697 -37.77554 -36.73024 -34.85355 -33.22243 -32.73162 -32.12232 -29.63655 -27.30506 -26.31399 -25.70091 -25.17950 -24.64062 -22.50170 -21.73452 -21.19094 -19.21544 -18.92766 -17.57149 -16.96618 -16.80962 -16.27459 -16.15112 -15.95470 -15.26599 -15.23565 -15.02032 -14.72319 -14.07802 -13.97036 -13.75114 -13.29268 -13.23550 -12.62594 -12.49261 -12.42264 -12.27362 -11.96357 -11.83416 -11.76087 -11.65260 -11.39872 -11.32140 -11.20881 -11.07234 -10.93851 -10.70711 -10.48992 -10.21763 -10.02288 -9.67373 -9.63525 -9.18847 -8.92150 -8.81930 -8.25926 -8.18079 -7.55893 -5.96099 -4.16304 3.12100 3.23826 3.32779 3.33862 3.42752 3.92857 4.14217 4.32107 4.63824 4.78911 4.81920 4.92088 4.96684 5.02862 5.08579 5.11506 5.15751 5.27063 5.31566 5.34286 5.37785 5.40844 5.52014 5.64447 5.77334 5.85992 5.91616 5.94863 6.06228 6.08012 6.18627 6.35743 6.60134 6.66356 6.78522 6.79290 6.90767 7.00681 7.12547 7.20502 7.29901 7.63304 7.73692 7.87234 8.03672 8.35885 8.80539 9.04329 9.46725 9.58457 10.92887 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.002926 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.233802 B = 9568.099261 C =10033.975137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.118 4.118 5 C 0.067 3.933 6 O -0.381 6.381 7 C 0.047 3.953 8 C 0.142 3.858 9 N -0.636 5.636 10 C 0.089 3.911 11 C 0.700 3.300 12 O -0.612 6.612 13 N -0.698 5.698 14 C 0.184 3.816 15 C 0.037 3.963 16 C -0.498 4.498 17 H 0.060 0.940 18 C 0.074 3.926 19 N -0.863 5.863 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.199 4.199 25 C -0.212 4.212 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.397 0.603 43 H 0.016 0.984 44 H 0.108 0.892 45 H 0.262 0.738 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.347 -3.027 11.181 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.012 4.012 4 C -0.156 4.156 5 C -0.010 4.010 6 O -0.300 6.300 7 C -0.031 4.031 8 C 0.017 3.983 9 N -0.375 5.375 10 C -0.055 4.055 11 C 0.401 3.599 12 O -0.493 6.493 13 N -0.349 5.349 14 C 0.060 3.940 15 C 0.036 3.964 16 C -0.535 4.535 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.499 5.499 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.237 4.237 25 C -0.249 4.249 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.232 0.768 43 H 0.035 0.965 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.962 -2.415 11.380 19.752 hybrid contribution 0.323 -0.676 -0.146 0.763 sum -15.639 -3.091 11.234 19.503 Atomic orbital electron populations 1.22751 0.80873 1.02866 0.99995 1.87880 1.19799 1.27844 1.95429 1.22377 0.93696 0.84797 1.00324 1.21355 0.92419 0.97039 1.04759 1.22232 0.82147 0.96538 1.00058 1.87865 1.17018 1.29731 1.95407 1.23108 0.93982 0.85626 1.00419 1.21204 0.91453 0.99672 0.85953 1.46841 1.72800 1.06112 1.11696 1.21606 1.01048 0.80150 1.02653 1.15936 0.78339 0.85070 0.80516 1.90802 1.61851 1.12609 1.84064 1.44936 1.72288 1.10332 1.07340 1.20886 0.99865 0.91633 0.81627 1.19241 0.93052 0.96370 0.87692 1.20507 1.02724 0.97070 1.33197 0.92153 1.25012 0.98212 0.95785 0.94069 1.69927 1.23964 1.22480 1.33546 0.86591 0.81864 0.82122 0.77477 1.20611 1.21216 1.19808 1.22935 1.03081 0.96114 1.01597 1.22941 0.93392 0.99461 1.09131 0.93973 0.89519 0.94097 0.93225 0.93055 0.90045 0.90298 0.93555 0.93368 0.92915 0.92703 0.90469 0.88425 0.93495 0.90699 0.91803 0.76786 0.96546 0.87398 0.92761 0.91498 0.90251 0.90707 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.95 10.70 -35.23 -0.38 -4.33 16 3 C 0.06 0.56 5.94 37.15 0.22 0.78 16 4 C -0.12 -1.15 5.95 -26.73 -0.16 -1.31 16 5 C 0.07 0.69 5.94 37.16 0.22 0.91 16 6 O -0.38 -4.88 9.28 -35.23 -0.33 -5.21 16 7 C 0.05 0.60 6.28 37.16 0.23 0.83 16 8 C 0.14 2.04 5.82 -4.04 -0.02 2.02 16 9 N -0.64 -11.17 2.84 -187.35 -0.53 -11.71 16 10 C 0.09 1.34 9.89 59.85 0.59 1.94 16 11 C 0.70 15.47 8.27 -86.92 -0.72 14.75 16 12 O -0.61 -15.39 15.91 5.29 0.08 -15.31 16 13 N -0.70 -15.81 4.96 -65.23 -0.32 -16.14 16 14 C 0.18 4.51 4.61 -4.04 -0.02 4.49 16 15 C 0.04 0.89 2.08 -155.66 -0.32 0.57 16 16 C -0.50 -12.76 8.26 -34.44 -0.28 -13.04 16 17 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 18 C 0.07 1.90 5.29 -17.82 -0.09 1.81 16 19 N -0.86 -23.30 10.17 55.43 0.56 -22.74 16 20 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 24 C -0.20 -4.41 9.96 -26.69 -0.27 -4.68 16 25 C -0.21 -4.52 9.92 -26.69 -0.26 -4.78 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.10 1.50 7.36 -51.93 -0.38 1.12 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.98 7.24 -51.93 -0.38 0.60 16 41 H 0.06 0.99 6.57 -51.93 -0.34 0.65 16 42 H 0.40 8.71 5.73 -40.82 -0.23 8.48 16 43 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 44 H 0.11 3.01 5.97 -51.93 -0.31 2.70 16 45 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 48 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 49 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -30.56 399.36 -8.48 -39.04 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.79 Total: 9.56 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 0.23 Total: 5.61 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.29 Total: -50.58 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.62 Total: -24.85 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.56 -8.48 -39.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431189044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.965 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds