Wall clock time and date at job start Tue Mar 31 2020 10:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99885 * 2 1 4 4 C 1.52995 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47220 * 179.97438 * 4 3 2 6 6 O 1.42893 * 109.47214 * 180.02562 * 5 4 3 7 7 C 1.42905 * 113.99988 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47134 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.46487 * 65.00419 * 8 7 6 10 10 C 1.46501 * 119.99971 * 269.99388 * 9 8 7 11 11 C 1.34774 * 119.99859 * 90.00390 * 9 8 7 12 12 O 1.21585 * 120.00301 * 4.62439 * 11 9 8 13 13 N 1.34774 * 119.99685 * 184.63200 * 11 9 8 14 14 C 1.46500 * 120.00215 * 174.92675 * 13 11 9 15 15 C 1.53001 * 109.47640 * 184.60581 * 14 13 11 16 16 C 1.50702 * 115.54657 * 306.48420 * 15 14 13 17 17 H 1.08004 * 119.99364 * 144.25174 * 16 15 14 18 18 C 1.37875 * 120.00460 * 324.25410 * 16 15 14 19 19 N 1.31515 * 119.99501 * 3.35925 * 18 16 15 20 20 Si 1.86798 * 120.00140 * 183.36729 * 18 16 15 21 21 H 1.48500 * 109.47099 * 89.99662 * 20 18 16 22 22 H 1.48500 * 109.47116 * 209.99949 * 20 18 16 23 23 H 1.48497 * 109.46974 * 329.99573 * 20 18 16 24 24 C 1.52999 * 117.50095 * 160.81384 * 15 14 13 25 25 C 1.52997 * 117.49895 * 92.15207 * 15 14 13 26 26 H 1.09000 * 109.47250 * 60.00689 * 1 2 3 27 27 H 1.09007 * 109.46508 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47284 * 300.00155 * 1 2 3 29 29 H 1.08999 * 109.47400 * 59.99285 * 3 2 1 30 30 H 1.09003 * 109.46663 * 300.00147 * 3 2 1 31 31 H 1.08995 * 109.47527 * 59.99887 * 4 3 2 32 32 H 1.08997 * 109.47071 * 299.99735 * 4 3 2 33 33 H 1.08999 * 109.47366 * 59.99519 * 5 4 3 34 34 H 1.09010 * 109.46651 * 299.99981 * 5 4 3 35 35 H 1.09001 * 109.46790 * 60.00393 * 7 6 5 36 36 H 1.08999 * 109.47400 * 299.99908 * 7 6 5 37 37 H 1.08997 * 109.47302 * 305.00516 * 8 7 6 38 38 H 1.08993 * 109.47000 * 184.99876 * 8 7 6 39 39 H 1.08996 * 109.47009 * 264.32276 * 10 9 8 40 40 H 1.09004 * 109.46849 * 24.32122 * 10 9 8 41 41 H 1.08997 * 109.46961 * 144.31564 * 10 9 8 42 42 H 0.97002 * 120.00157 * 354.65454 * 13 11 9 43 43 H 1.09000 * 109.47247 * 304.61397 * 14 13 11 44 44 H 1.09003 * 109.46929 * 64.60860 * 14 13 11 45 45 H 0.97009 * 119.99602 * 185.00491 * 19 18 16 46 46 H 1.09005 * 117.49383 * 0.02562 * 24 15 14 47 47 H 1.08995 * 117.49725 * 145.02034 * 24 15 14 48 48 H 1.08999 * 117.50231 * 214.98654 * 25 15 14 49 49 H 1.09007 * 117.49462 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0000 6 8 5.5821 2.4698 0.0000 7 6 6.2646 3.7254 -0.0012 8 6 7.7755 3.4846 -0.0004 9 7 8.1662 2.8300 -1.2515 10 6 8.1805 1.3677 -1.3397 11 6 8.5126 3.5730 -2.3212 12 8 8.5824 4.7830 -2.2242 13 7 8.7815 2.9748 -3.4986 14 6 9.0492 3.7865 -4.6885 15 6 9.2090 2.8720 -5.9046 16 6 10.2238 1.7675 -5.7582 17 1 10.0429 0.8044 -6.2123 18 6 11.3830 1.9863 -5.0445 19 7 11.5732 3.1367 -4.4361 20 14 12.6832 0.6491 -4.9419 21 1 13.6409 0.8026 -6.0664 22 1 13.4110 0.7642 -3.6526 23 1 12.0314 -0.6825 -5.0250 24 6 9.0458 3.5024 -7.2890 25 6 7.9590 2.5772 -6.7360 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8464 -0.8900 31 1 3.8575 0.6437 -0.8890 32 1 3.8567 0.6441 0.8909 33 1 3.8356 3.1241 0.8895 34 1 3.8363 3.1229 -0.8906 35 1 5.9867 4.2907 0.8884 36 1 5.9866 4.2892 -0.8916 37 1 8.0413 2.8462 0.8421 38 1 8.2954 4.4384 0.0882 39 1 9.1895 1.0021 -1.1492 40 1 7.4976 0.9523 -0.5986 41 1 7.8650 1.0607 -2.3368 42 1 8.8018 2.0068 -3.5574 43 1 8.2178 4.4714 -4.8556 44 1 9.9659 4.3573 -4.5402 45 1 12.4181 3.3183 -3.9953 46 1 8.8250 4.5689 -7.3334 47 1 9.6721 3.1181 -8.0940 48 1 7.8706 1.5845 -7.1774 49 1 7.0226 3.0345 -6.4163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431189044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:03 Heat of formation + Delta-G solvation = -111.863651 kcal Electronic energy + Delta-G solvation = -27016.343239 eV Core-core repulsion = 23172.293968 eV Total energy + Delta-G solvation = -3844.049271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01312 -39.33446 -38.75224 -38.40576 -36.32599 -34.82373 -34.11686 -33.68983 -30.79882 -27.97341 -27.94219 -27.42791 -26.64810 -25.53675 -23.72652 -22.94476 -22.51764 -21.10862 -20.54062 -19.11540 -18.05261 -17.76095 -17.63526 -17.20171 -17.02973 -16.78064 -16.52546 -16.30765 -15.74882 -15.65646 -15.19204 -15.16731 -14.87233 -14.36359 -14.27694 -14.00624 -13.52253 -13.43955 -13.29429 -13.14807 -12.96792 -12.91642 -12.72919 -12.59629 -12.54526 -12.28015 -12.18946 -12.03070 -12.00337 -11.87344 -11.50501 -11.03882 -10.83281 -10.67376 -10.64357 -10.54831 -10.14363 -9.81888 -9.23424 -7.92040 -6.18033 1.43651 1.47571 1.55444 1.94499 2.34319 2.42848 2.44986 3.02646 3.17583 3.39347 3.68384 3.92953 4.10103 4.12426 4.18491 4.27831 4.28579 4.37415 4.40299 4.45875 4.47033 4.54011 4.54616 4.55907 4.57495 4.67138 4.75631 4.78163 4.82560 4.85792 4.92216 4.96568 4.98564 5.10427 5.12750 5.14215 5.30826 5.54103 5.62859 5.72377 5.99102 6.01638 6.13080 6.20340 6.29839 6.40227 6.83848 7.32054 7.46949 7.85526 8.94426 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.002926 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.233802 B = 9568.099261 C =10033.975137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.065 3.935 4 C -0.112 4.112 5 C 0.065 3.935 6 O -0.395 6.395 7 C 0.056 3.944 8 C 0.135 3.865 9 N -0.631 5.631 10 C 0.090 3.910 11 C 0.693 3.307 12 O -0.649 6.649 13 N -0.697 5.697 14 C 0.197 3.803 15 C 0.008 3.992 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.035 3.965 19 N -0.888 5.888 20 Si 0.950 3.050 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.264 1.264 24 C -0.197 4.197 25 C -0.187 4.187 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.029 0.971 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.399 0.601 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.256 0.744 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 -4.286 12.084 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.011 4.011 4 C -0.150 4.150 5 C -0.011 4.011 6 O -0.314 6.314 7 C -0.022 4.022 8 C 0.012 3.988 9 N -0.368 5.368 10 C -0.053 4.053 11 C 0.395 3.605 12 O -0.533 6.533 13 N -0.349 5.349 14 C 0.072 3.928 15 C 0.008 3.992 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.167 4.167 19 N -0.525 5.525 20 Si 0.776 3.224 21 H -0.208 1.208 22 H -0.217 1.217 23 H -0.188 1.188 24 C -0.236 4.236 25 C -0.225 4.225 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.235 0.765 43 H 0.029 0.971 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.340 -3.717 12.301 21.583 hybrid contribution 0.665 -0.292 -0.408 0.833 sum -16.675 -4.009 11.893 20.870 Atomic orbital electron populations 1.22935 0.79293 1.03863 1.00966 1.87833 1.21650 1.28720 1.95645 1.22398 0.92710 0.84596 1.01412 1.21289 0.93445 0.96521 1.03758 1.22356 0.80761 0.97006 1.00980 1.87822 1.18499 1.29581 1.95532 1.22928 0.92819 0.85781 1.00665 1.21458 0.92614 0.99516 0.85258 1.46934 1.71482 1.07032 1.11345 1.21721 1.01859 0.78515 1.03181 1.16165 0.78246 0.84895 0.81239 1.90763 1.63424 1.14367 1.84794 1.44820 1.72577 1.10197 1.07308 1.20540 0.97755 0.91696 0.82818 1.19281 0.94879 0.96844 0.88222 1.20692 1.03200 0.97324 1.32956 0.92304 1.25615 0.99865 0.97330 0.93901 1.70115 1.23919 1.24070 1.34417 0.85681 0.79534 0.80297 0.76878 1.20793 1.21683 1.18783 1.22959 1.03457 0.96904 1.00280 1.22926 0.92892 0.99751 1.06888 0.93304 0.88639 0.92790 0.91475 0.92571 0.91825 0.90476 0.91300 0.93702 0.89769 0.95303 0.87507 0.89800 0.93220 0.88221 0.92380 0.76465 0.97138 0.90978 0.93439 0.90682 0.90234 0.89711 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.92 10.70 -148.98 -1.59 -9.52 16 3 C 0.07 1.01 5.94 71.98 0.43 1.44 16 4 C -0.11 -2.03 5.95 30.59 0.18 -1.85 16 5 C 0.07 1.21 5.94 71.98 0.43 1.64 16 6 O -0.39 -9.36 9.28 -148.98 -1.38 -10.74 16 7 C 0.06 1.36 6.28 71.98 0.45 1.81 16 8 C 0.13 3.72 5.82 86.38 0.50 4.23 16 9 N -0.63 -21.84 2.84 -864.91 -2.45 -24.29 16 10 C 0.09 2.60 9.89 127.77 1.26 3.86 16 11 C 0.69 31.11 8.27 179.06 1.48 32.59 16 12 O -0.65 -33.60 15.91 -3.98 -0.06 -33.66 16 13 N -0.70 -32.07 4.96 -478.54 -2.37 -34.44 16 14 C 0.20 9.87 4.61 86.38 0.40 10.27 16 15 C 0.01 0.41 2.08 -52.93 -0.11 0.30 16 16 C -0.50 -25.67 8.26 25.60 0.21 -25.46 16 17 H 0.06 2.96 7.82 -2.91 -0.02 2.93 16 18 C 0.03 1.79 5.29 84.65 0.45 2.23 16 19 N -0.89 -48.85 10.17 21.45 0.22 -48.64 16 20 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 C -0.20 -8.61 9.96 30.62 0.30 -8.30 16 25 C -0.19 -7.69 9.92 30.62 0.30 -7.39 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 2.32 8.07 -2.39 -0.02 2.30 16 38 H 0.08 2.57 7.36 -2.39 -0.02 2.55 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 2.38 7.24 -2.38 -0.02 2.37 16 41 H 0.06 1.74 6.57 -2.39 -0.02 1.73 16 42 H 0.40 17.63 5.73 -92.71 -0.53 17.09 16 43 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 44 H 0.07 4.18 5.97 -2.39 -0.01 4.16 16 45 H 0.26 13.86 8.32 -92.70 -0.77 13.09 16 46 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 47 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 48 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -65.99 399.36 2.30 -63.68 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.38 Total: 37.27 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 7.54 Total: 16.89 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -4.61 Total: -107.37 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -3.04 Total: -53.92 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -65.99 2.30 -63.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431189044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.179 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds