Wall clock time and date at job start Tue Mar 31 2020 10:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47007 * 2 1 4 4 C 1.42897 * 114.00153 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.84842 * 341.19443 * 4 3 2 6 6 C 1.53949 * 113.74514 * 112.40058 * 4 3 2 7 7 C 1.53777 * 87.02177 * 139.94575 * 6 4 3 8 8 C 1.52997 * 113.61918 * 89.22523 * 7 6 4 9 9 O 1.42902 * 109.46567 * 76.45943 * 8 7 6 10 10 N 1.46505 * 113.61495 * 220.05177 * 7 6 4 11 11 C 1.34780 * 119.99603 * 172.03580 * 10 7 6 12 12 O 1.21582 * 120.00428 * 355.16973 * 11 10 7 13 13 N 1.34772 * 119.99322 * 175.16464 * 11 10 7 14 14 C 1.46505 * 120.00039 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47515 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47030 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00523 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99996 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99704 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99941 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47537 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47081 * 120.00299 * 20 18 16 23 23 H 1.48504 * 109.47052 * 239.99740 * 20 18 16 24 24 C 1.53776 * 113.61554 * 209.99940 * 4 3 2 25 25 C 1.53001 * 113.61634 * 105.38094 * 24 4 3 26 26 C 1.53002 * 113.61563 * 334.48343 * 24 4 3 27 27 H 1.09005 * 109.47154 * 299.99741 * 1 2 3 28 28 H 1.08998 * 109.47102 * 60.00110 * 1 2 3 29 29 H 1.09003 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47113 * 240.00578 * 2 1 3 31 31 H 1.08998 * 109.47102 * 119.99890 * 2 1 3 32 32 H 1.09003 * 113.61698 * 25.42078 * 6 4 3 33 33 H 1.09002 * 113.66734 * 254.47062 * 6 4 3 34 34 H 1.08998 * 109.47719 * 196.45953 * 8 7 6 35 35 H 1.09005 * 109.47378 * 316.46595 * 8 7 6 36 36 H 0.96706 * 113.99958 * 179.97438 * 9 8 7 37 37 H 0.96994 * 119.99400 * 352.31069 * 10 7 6 38 38 H 0.97003 * 120.00918 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.46743 * 299.99959 * 14 13 11 40 40 H 1.08997 * 109.47130 * 59.99678 * 14 13 11 41 41 H 1.09001 * 109.46998 * 299.99701 * 15 14 13 42 42 H 1.08997 * 109.46800 * 59.99914 * 15 14 13 43 43 H 0.96996 * 120.00082 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47500 * 157.49529 * 25 24 4 45 45 H 1.09004 * 109.47427 * 277.50241 * 25 24 4 46 46 H 1.09003 * 109.46927 * 37.50295 * 25 24 4 47 47 H 1.09005 * 109.46547 * 322.50209 * 26 24 4 48 48 H 1.08999 * 109.47165 * 82.49877 * 26 24 4 49 49 H 1.08993 * 109.47317 * 202.50355 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9280 0.5457 0.3229 6 6 4.0058 2.0447 -1.3036 7 6 4.9910 2.8303 -0.4221 8 6 6.2883 2.0741 -0.1288 9 8 7.1336 2.1141 -1.2803 10 7 5.2233 4.2022 -0.8805 11 6 5.9353 5.0559 -0.1183 12 8 6.3099 4.7162 0.9874 13 7 6.2322 6.2860 -0.5820 14 6 7.0066 7.2138 0.2461 15 6 7.2023 8.5300 -0.5092 16 6 7.9984 9.4845 0.3430 17 1 8.3311 9.1829 1.3251 18 6 8.3021 10.7431 -0.1313 19 7 7.8965 11.1107 -1.3271 20 14 9.2894 11.9260 0.9247 21 1 9.6218 11.2760 2.2178 22 1 10.5428 12.2925 0.2177 23 1 8.4880 13.1503 1.1782 24 6 3.9488 2.7252 0.7039 25 6 4.5590 2.4539 2.0805 26 6 2.9411 3.8764 0.7157 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3035 2.6784 -1.8452 33 1 4.4866 1.3028 -1.9412 34 1 6.7990 2.5415 0.7132 35 1 6.0572 1.0375 0.1165 36 1 7.9762 1.6536 -1.1659 37 1 4.8613 4.4973 -1.7306 38 1 5.9338 6.5569 -1.4643 39 1 6.4706 7.4051 1.1757 40 1 7.9789 6.7754 0.4708 41 1 7.7381 8.3391 -1.4390 42 1 6.2299 8.9682 -0.7335 43 1 8.1098 11.9961 -1.6607 44 1 5.2400 3.2637 2.3422 45 1 3.7646 2.3924 2.8243 46 1 5.1071 1.5120 2.0557 47 1 2.3983 3.8937 -0.2295 48 1 2.2376 3.7350 1.5362 49 1 3.4694 4.8204 0.8485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436326731.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:18 Heat of formation + Delta-G solvation = -115.434347 kcal Electronic energy + Delta-G solvation = -27711.023689 eV Core-core repulsion = 23866.819581 eV Total energy + Delta-G solvation = -3844.204108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25662 -38.92431 -37.33138 -36.08979 -34.67159 -33.31079 -32.62005 -31.35308 -30.59853 -29.29210 -28.20783 -26.30556 -24.70524 -23.43449 -22.91123 -22.31113 -20.96497 -20.38940 -18.33905 -17.94146 -17.32374 -17.11527 -16.29923 -15.91099 -15.63886 -15.24862 -15.12877 -14.80479 -14.48974 -14.13541 -13.96902 -13.60400 -13.36680 -13.34124 -13.04415 -12.89792 -12.59452 -12.38089 -12.25049 -12.19252 -11.96268 -11.76971 -11.48163 -11.44362 -11.13060 -11.03638 -10.88980 -10.71318 -10.57897 -10.48839 -10.28242 -10.12779 -9.65413 -9.51619 -9.42054 -9.16893 -8.79434 -8.44167 -8.14979 -6.05820 -4.08077 3.03786 3.30596 3.38075 3.43324 3.51862 3.71191 3.89417 4.17720 4.38257 4.42907 4.51286 4.73229 4.75932 4.78474 4.94467 5.04819 5.07372 5.19198 5.22552 5.31272 5.35952 5.38172 5.48908 5.58985 5.63911 5.69946 5.79353 5.82774 5.88014 5.93609 6.04430 6.13935 6.36541 6.39997 6.45711 6.47030 6.78482 6.84780 7.02940 7.12583 7.36620 7.56666 7.63316 7.69052 7.94141 8.31255 8.56353 8.97771 9.14322 9.56381 11.05941 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.002569 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.043817 B =10895.361212 C =11221.094231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.365 6.365 4 C 0.070 3.930 5 H 0.087 0.913 6 C -0.151 4.151 7 C 0.190 3.810 8 C 0.082 3.918 9 O -0.565 6.565 10 N -0.727 5.727 11 C 0.706 3.294 12 O -0.596 6.596 13 N -0.740 5.740 14 C 0.143 3.857 15 C 0.012 3.988 16 C -0.518 4.518 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.071 4.071 25 C -0.145 4.145 26 C -0.108 4.108 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.377 0.623 37 H 0.395 0.605 38 H 0.392 0.608 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.261 0.739 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 -24.784 -0.019 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.011 3.989 5 H 0.105 0.895 6 C -0.189 4.189 7 C 0.101 3.899 8 C 0.003 3.997 9 O -0.370 6.370 10 N -0.382 5.382 11 C 0.406 3.594 12 O -0.475 6.475 13 N -0.393 5.393 14 C 0.020 3.980 15 C -0.025 4.025 16 C -0.557 4.557 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.072 4.072 25 C -0.202 4.202 26 C -0.165 4.165 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.223 0.777 37 H 0.228 0.772 38 H 0.225 0.775 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.899 -24.412 0.655 27.165 hybrid contribution 0.871 0.387 -0.206 0.975 sum -11.027 -24.026 0.449 26.439 Atomic orbital electron populations 1.21740 0.93836 1.02092 1.03186 1.22509 0.95589 0.84284 0.99843 1.87974 1.20142 1.25770 1.94486 1.23769 0.81338 0.97602 0.96187 0.89528 1.23783 0.97702 1.00012 0.97407 1.21066 0.91860 0.81594 0.95333 1.22322 0.90801 0.97367 0.89224 1.86461 1.32430 1.79891 1.38223 1.44804 1.58814 1.10653 1.23953 1.15978 0.78664 0.80653 0.84116 1.90786 1.59470 1.77234 1.20026 1.45531 1.59031 1.13721 1.21046 1.21528 0.93408 0.89474 0.93575 1.19325 0.97563 0.89648 0.95988 1.21095 1.34148 0.98246 1.02219 0.92216 1.25006 0.96038 0.98240 0.95128 1.69968 1.46214 1.20022 1.17146 0.86463 0.79759 0.80819 0.80554 1.19594 1.20981 1.20975 1.22461 0.94715 0.94979 0.95095 1.21875 1.01019 1.02341 0.94942 1.21248 0.96980 0.96455 1.01850 0.91835 0.91852 0.91296 0.93536 0.93508 0.88449 0.90236 0.90580 0.93629 0.77669 0.77155 0.77540 0.92950 0.92981 0.96019 0.96031 0.92957 0.89439 0.92882 0.93306 0.92421 0.92454 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.41 6.50 37.16 0.24 0.65 16 3 O -0.37 -3.71 9.45 -35.23 -0.33 -4.05 16 4 C 0.07 0.68 3.37 -25.83 -0.09 0.59 16 5 H 0.09 0.72 7.16 -51.93 -0.37 0.35 16 6 C -0.15 -1.50 6.86 -25.83 -0.18 -1.67 16 7 C 0.19 2.28 0.68 -131.01 -0.09 2.19 16 8 C 0.08 0.97 4.77 37.16 0.18 1.15 16 9 O -0.57 -6.85 13.53 -35.23 -0.48 -7.32 16 10 N -0.73 -9.91 4.26 -51.66 -0.22 -10.13 16 11 C 0.71 12.33 7.35 -86.92 -0.64 11.69 16 12 O -0.60 -11.93 12.58 5.29 0.07 -11.86 16 13 N -0.74 -13.47 5.56 -65.22 -0.36 -13.83 16 14 C 0.14 3.13 5.61 -4.04 -0.02 3.10 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 20 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.07 -0.83 1.03 -153.70 -0.16 -0.99 16 25 C -0.14 -1.73 8.01 37.16 0.30 -1.43 16 26 C -0.11 -1.36 7.86 37.16 0.29 -1.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 0.96 7.66 -51.93 -0.40 0.56 16 33 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.08 1.09 6.10 -51.93 -0.32 0.78 16 35 H 0.05 0.43 6.98 -51.93 -0.36 0.06 16 36 H 0.38 3.02 9.12 45.56 0.42 3.43 16 37 H 0.39 4.62 8.68 -40.82 -0.35 4.27 16 38 H 0.39 6.33 8.49 -40.82 -0.35 5.99 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.09 1.31 6.19 -51.93 -0.32 0.99 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.49 7.00 -51.93 -0.36 0.13 16 47 H 0.06 0.69 7.20 -51.93 -0.37 0.31 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.06 0.89 7.03 -51.93 -0.37 0.53 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -33.06 386.83 -7.89 -40.95 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.77 Total: 9.09 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.34 Total: 0.45 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.15 Total: -49.68 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.74 Total: -23.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.06 -7.89 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436326731.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.484 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds