Wall clock time and date at job start Tue Mar 31 2020 10:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47180 * 2 1 4 4 C 1.42896 * 113.99987 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.84854 * 338.30598 * 4 3 2 6 6 C 1.53783 * 113.61434 * 109.50281 * 4 3 2 7 7 C 1.53782 * 87.08076 * 89.11712 * 6 4 3 8 8 C 1.52997 * 113.61525 * 270.80195 * 7 6 4 9 9 O 1.42908 * 109.46769 * 283.85552 * 8 7 6 10 10 N 1.46500 * 113.61200 * 139.97794 * 7 6 4 11 11 C 1.34777 * 119.99898 * 185.73474 * 10 7 6 12 12 O 1.21591 * 120.00142 * 355.23897 * 11 10 7 13 13 N 1.34774 * 120.00257 * 175.23962 * 11 10 7 14 14 C 1.46501 * 119.99988 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47106 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47086 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00364 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99787 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99961 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46982 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.46989 * 299.99548 * 20 18 16 23 23 H 1.48503 * 109.47187 * 59.99885 * 20 18 16 24 24 C 1.53778 * 113.61813 * 207.00307 * 4 3 2 25 25 C 1.52992 * 113.61784 * 156.33420 * 24 4 3 26 26 C 1.53001 * 113.61300 * 25.42930 * 24 4 3 27 27 H 1.09004 * 109.46685 * 60.00079 * 1 2 3 28 28 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46834 * 300.00262 * 1 2 3 30 30 H 1.08999 * 109.46834 * 239.99738 * 2 1 3 31 31 H 1.09004 * 109.46685 * 119.99921 * 2 1 3 32 32 H 1.08999 * 113.61847 * 334.56691 * 6 4 3 33 33 H 1.09006 * 113.69139 * 203.67952 * 6 4 3 34 34 H 1.08994 * 109.46981 * 43.84993 * 8 7 6 35 35 H 1.09000 * 109.47270 * 163.85432 * 8 7 6 36 36 H 0.96696 * 114.00222 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00677 * 5.74122 * 10 7 6 38 38 H 0.96994 * 119.99778 * 359.97438 * 13 11 10 39 39 H 1.09002 * 109.46972 * 60.00303 * 14 13 11 40 40 H 1.08997 * 109.47494 * 299.99928 * 14 13 11 41 41 H 1.09005 * 109.46677 * 59.99972 * 15 14 13 42 42 H 1.08997 * 109.47203 * 300.00495 * 15 14 13 43 43 H 0.97004 * 119.99484 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47198 * 157.49462 * 25 24 4 45 45 H 1.08999 * 109.47462 * 277.49271 * 25 24 4 46 46 H 1.09001 * 109.47061 * 37.49793 * 25 24 4 47 47 H 1.09000 * 109.47274 * 322.50549 * 26 24 4 48 48 H 1.09001 * 109.47240 * 82.50474 * 26 24 4 49 49 H 1.08997 * 109.47222 * 202.50525 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9267 0.5630 0.3704 6 6 4.0073 1.9779 -1.3290 7 6 3.8420 3.3959 -0.7573 8 6 2.4753 4.0187 -1.0487 9 8 2.4285 4.4487 -2.4108 10 7 4.9558 4.2917 -1.0788 11 6 5.0006 5.5290 -0.5465 12 8 4.0750 5.9336 0.1304 13 7 6.0712 6.3181 -0.7644 14 6 6.1201 7.6629 -0.1853 15 6 7.4329 8.3415 -0.5818 16 6 7.4834 9.7246 0.0144 17 1 6.6617 10.0836 0.6162 18 6 8.5788 10.5317 -0.2085 19 7 9.5797 10.0943 -0.9411 20 14 8.6418 12.2459 0.5311 21 1 9.9159 12.9045 0.1462 22 1 7.4978 13.0459 0.0247 23 1 8.5622 12.1498 2.0109 24 6 3.9462 2.7601 0.6391 25 6 5.3808 2.6595 1.1613 26 6 2.9814 3.3645 1.6612 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3694 1.7769 -2.1896 33 1 5.0460 1.6928 -1.4964 34 1 1.6942 3.2788 -0.8743 35 1 2.3184 4.8744 -0.3920 36 1 1.5891 4.8548 -2.6664 37 1 5.6609 3.9944 -1.6748 38 1 6.8097 5.9953 -1.3041 39 1 6.0612 7.5931 0.9009 40 1 5.2804 8.2497 -0.5578 41 1 7.4922 8.4112 -1.6680 42 1 8.2723 7.7546 -0.2091 43 1 10.3505 10.6621 -1.0975 44 1 5.8151 3.6572 1.2249 45 1 5.3762 2.2016 2.1504 46 1 5.9732 2.0482 0.4805 47 1 1.9560 3.2285 1.3176 48 1 3.1115 2.8669 2.6222 49 1 3.1893 4.4287 1.7720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436326736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:24 Heat of formation + Delta-G solvation = -112.361770 kcal Electronic energy + Delta-G solvation = -27924.318654 eV Core-core repulsion = 24080.247783 eV Total energy + Delta-G solvation = -3844.070871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27601 -38.94224 -37.12787 -35.98521 -34.65283 -33.25917 -32.61044 -31.40407 -30.45523 -29.31106 -28.31810 -26.18448 -24.65767 -23.44040 -22.87369 -22.25539 -20.95372 -20.37187 -18.37957 -17.89850 -17.44581 -16.80369 -16.27669 -15.91860 -15.65792 -15.21707 -15.12244 -14.58829 -14.49064 -14.09253 -13.92930 -13.57835 -13.45141 -13.18840 -13.09707 -12.81756 -12.56702 -12.39220 -12.25843 -12.22160 -12.03162 -11.78694 -11.48646 -11.36875 -11.13996 -10.99232 -10.78841 -10.65987 -10.59902 -10.40432 -10.23981 -10.04598 -9.62409 -9.57191 -9.32849 -9.09414 -8.72231 -8.42460 -8.12482 -6.05051 -4.07434 3.18116 3.21487 3.34088 3.37596 3.41640 3.73408 4.03287 4.25525 4.38867 4.43349 4.64668 4.74240 4.84800 4.85530 4.96569 5.03611 5.08487 5.18965 5.31828 5.34522 5.36762 5.46953 5.56949 5.63445 5.71666 5.73773 5.79852 5.82884 5.94658 6.01195 6.08526 6.13461 6.28879 6.39087 6.47747 6.53697 6.83007 6.87582 7.00425 7.14499 7.39375 7.63973 7.69718 7.77353 7.94714 8.32146 8.59604 8.97980 9.18274 9.56900 11.06580 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.030459 B = 0.002565 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.042908 B =10914.084646 C =11015.675213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.359 6.359 4 C 0.072 3.928 5 H 0.078 0.922 6 C -0.158 4.158 7 C 0.198 3.802 8 C 0.078 3.922 9 O -0.570 6.570 10 N -0.732 5.732 11 C 0.705 3.295 12 O -0.594 6.594 13 N -0.741 5.741 14 C 0.143 3.857 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.287 1.287 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.079 4.079 25 C -0.120 4.120 26 C -0.137 4.137 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.374 0.626 37 H 0.392 0.608 38 H 0.391 0.609 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.262 0.738 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.047 0.953 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.180 -23.716 0.033 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.013 3.987 5 H 0.096 0.904 6 C -0.196 4.196 7 C 0.110 3.890 8 C 0.000 4.000 9 O -0.375 6.375 10 N -0.387 5.387 11 C 0.405 3.595 12 O -0.474 6.474 13 N -0.395 5.395 14 C 0.020 3.980 15 C -0.024 4.024 16 C -0.558 4.558 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.213 1.213 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.081 4.081 25 C -0.177 4.177 26 C -0.195 4.195 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.220 0.780 37 H 0.226 0.774 38 H 0.224 0.776 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.359 -23.326 0.620 27.398 hybrid contribution 0.507 0.619 -0.283 0.849 sum -13.852 -22.707 0.337 26.601 Atomic orbital electron populations 1.21746 0.93748 1.02184 1.03212 1.22526 0.95530 0.84008 1.00002 1.87882 1.19539 1.25993 1.94421 1.23014 0.81646 0.97913 0.96155 0.90360 1.23785 1.02058 0.95156 0.98580 1.21313 0.86415 0.87084 0.94206 1.22421 0.94890 0.99319 0.83361 1.86403 1.40786 1.82147 1.28123 1.44928 1.26637 1.14249 1.52837 1.15998 0.83193 0.80135 0.80179 1.90793 1.37430 1.74150 1.44978 1.45535 1.19976 1.17468 1.56507 1.21521 1.00750 0.78832 0.96895 1.19313 0.90481 0.95313 0.97313 1.21020 1.03820 0.98947 1.32048 0.92322 1.25000 0.95553 0.98613 0.95188 1.69954 1.07616 1.37114 1.38710 0.86575 0.77244 0.84072 0.79643 1.21296 1.20123 1.20136 1.22458 0.96711 0.93640 0.95264 1.21464 0.93195 1.02819 1.00270 1.21674 0.98853 1.02042 0.96886 0.91842 0.91206 0.91782 0.93423 0.93359 0.89805 0.88771 0.91747 0.90588 0.77993 0.77401 0.77634 0.92984 0.92997 0.96049 0.96069 0.92860 0.91273 0.92303 0.92602 0.91656 0.93391 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.40 6.51 37.16 0.24 0.64 16 3 O -0.36 -3.50 6.75 -35.23 -0.24 -3.73 16 4 C 0.07 0.68 3.77 -25.92 -0.10 0.58 16 5 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 6 C -0.16 -1.55 6.85 -25.92 -0.18 -1.73 16 7 C 0.20 2.49 0.72 -131.00 -0.09 2.40 16 8 C 0.08 1.08 4.66 37.16 0.17 1.25 16 9 O -0.57 -7.91 13.53 -35.23 -0.48 -8.39 16 10 N -0.73 -10.15 4.22 -51.65 -0.22 -10.37 16 11 C 0.70 12.60 7.63 -86.92 -0.66 11.94 16 12 O -0.59 -12.37 12.88 5.29 0.07 -12.30 16 13 N -0.74 -13.62 5.56 -65.22 -0.36 -13.98 16 14 C 0.14 3.16 5.61 -4.04 -0.02 3.13 16 15 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 20 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.08 -0.91 1.25 -153.70 -0.19 -1.10 16 25 C -0.12 -1.31 8.49 37.15 0.32 -0.99 16 26 C -0.14 -1.74 7.97 37.16 0.30 -1.44 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.87 8.10 -51.93 -0.42 0.44 16 33 H 0.09 0.77 7.66 -51.93 -0.40 0.38 16 34 H 0.06 0.81 5.62 -51.93 -0.29 0.52 16 35 H 0.08 1.25 5.75 -51.93 -0.30 0.95 16 36 H 0.37 3.73 9.12 45.56 0.42 4.14 16 37 H 0.39 4.58 8.67 -40.82 -0.35 4.22 16 38 H 0.39 6.32 8.49 -40.82 -0.35 5.97 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 44 H 0.07 0.93 7.17 -51.93 -0.37 0.56 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.51 7.34 -51.93 -0.38 0.13 16 47 H 0.06 0.81 6.03 -51.93 -0.31 0.50 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 1.18 6.74 -51.93 -0.35 0.83 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -33.34 384.64 -7.82 -41.15 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.71 Total: 10.01 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.39 Total: 0.90 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.16 Total: -50.10 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.65 Total: -24.42 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.34 -7.82 -41.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436326736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.209 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds