Wall clock time and date at job start Tue Mar 31 2020 10:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47180 * 2 1 4 4 C 1.42896 * 113.99987 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.84854 * 338.30598 * 4 3 2 6 6 C 1.53783 * 113.61434 * 109.50281 * 4 3 2 7 7 C 1.53782 * 87.08076 * 89.11712 * 6 4 3 8 8 C 1.52997 * 113.61525 * 270.80195 * 7 6 4 9 9 O 1.42908 * 109.46769 * 283.85552 * 8 7 6 10 10 N 1.46500 * 113.61200 * 139.97794 * 7 6 4 11 11 C 1.34777 * 119.99898 * 185.73474 * 10 7 6 12 12 O 1.21591 * 120.00142 * 355.23897 * 11 10 7 13 13 N 1.34774 * 120.00257 * 175.23962 * 11 10 7 14 14 C 1.46501 * 119.99988 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47106 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47086 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00364 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99787 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99961 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46982 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.46989 * 299.99548 * 20 18 16 23 23 H 1.48503 * 109.47187 * 59.99885 * 20 18 16 24 24 C 1.53778 * 113.61813 * 207.00307 * 4 3 2 25 25 C 1.52992 * 113.61784 * 156.33420 * 24 4 3 26 26 C 1.53001 * 113.61300 * 25.42930 * 24 4 3 27 27 H 1.09004 * 109.46685 * 60.00079 * 1 2 3 28 28 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46834 * 300.00262 * 1 2 3 30 30 H 1.08999 * 109.46834 * 239.99738 * 2 1 3 31 31 H 1.09004 * 109.46685 * 119.99921 * 2 1 3 32 32 H 1.08999 * 113.61847 * 334.56691 * 6 4 3 33 33 H 1.09006 * 113.69139 * 203.67952 * 6 4 3 34 34 H 1.08994 * 109.46981 * 43.84993 * 8 7 6 35 35 H 1.09000 * 109.47270 * 163.85432 * 8 7 6 36 36 H 0.96696 * 114.00222 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00677 * 5.74122 * 10 7 6 38 38 H 0.96994 * 119.99778 * 359.97438 * 13 11 10 39 39 H 1.09002 * 109.46972 * 60.00303 * 14 13 11 40 40 H 1.08997 * 109.47494 * 299.99928 * 14 13 11 41 41 H 1.09005 * 109.46677 * 59.99972 * 15 14 13 42 42 H 1.08997 * 109.47203 * 300.00495 * 15 14 13 43 43 H 0.97004 * 119.99484 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47198 * 157.49462 * 25 24 4 45 45 H 1.08999 * 109.47462 * 277.49271 * 25 24 4 46 46 H 1.09001 * 109.47061 * 37.49793 * 25 24 4 47 47 H 1.09000 * 109.47274 * 322.50549 * 26 24 4 48 48 H 1.09001 * 109.47240 * 82.50474 * 26 24 4 49 49 H 1.08997 * 109.47222 * 202.50525 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9267 0.5630 0.3704 6 6 4.0073 1.9779 -1.3290 7 6 3.8420 3.3959 -0.7573 8 6 2.4753 4.0187 -1.0487 9 8 2.4285 4.4487 -2.4108 10 7 4.9558 4.2917 -1.0788 11 6 5.0006 5.5290 -0.5465 12 8 4.0750 5.9336 0.1304 13 7 6.0712 6.3181 -0.7644 14 6 6.1201 7.6629 -0.1853 15 6 7.4329 8.3415 -0.5818 16 6 7.4834 9.7246 0.0144 17 1 6.6617 10.0836 0.6162 18 6 8.5788 10.5317 -0.2085 19 7 9.5797 10.0943 -0.9411 20 14 8.6418 12.2459 0.5311 21 1 9.9159 12.9045 0.1462 22 1 7.4978 13.0459 0.0247 23 1 8.5622 12.1498 2.0109 24 6 3.9462 2.7601 0.6391 25 6 5.3808 2.6595 1.1613 26 6 2.9814 3.3645 1.6612 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3694 1.7769 -2.1896 33 1 5.0460 1.6928 -1.4964 34 1 1.6942 3.2788 -0.8743 35 1 2.3184 4.8744 -0.3920 36 1 1.5891 4.8548 -2.6664 37 1 5.6609 3.9944 -1.6748 38 1 6.8097 5.9953 -1.3041 39 1 6.0612 7.5931 0.9009 40 1 5.2804 8.2497 -0.5578 41 1 7.4922 8.4112 -1.6680 42 1 8.2723 7.7546 -0.2091 43 1 10.3505 10.6621 -1.0975 44 1 5.8151 3.6572 1.2249 45 1 5.3762 2.2016 2.1504 46 1 5.9732 2.0482 0.4805 47 1 1.9560 3.2285 1.3176 48 1 3.1115 2.8669 2.6222 49 1 3.1893 4.4287 1.7720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436326736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:23 Heat of formation + Delta-G solvation = -137.927065 kcal Electronic energy + Delta-G solvation = -27925.427249 eV Core-core repulsion = 24080.247783 eV Total energy + Delta-G solvation = -3845.179466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24744 -40.25449 -37.98321 -36.99579 -36.43572 -34.83831 -34.27239 -32.04372 -31.58908 -30.88466 -29.34357 -27.26496 -26.52551 -24.28611 -23.60999 -23.24680 -22.72203 -21.77694 -19.47372 -19.23431 -18.43314 -18.30678 -17.78073 -16.70681 -16.64741 -16.50875 -16.42291 -16.19534 -15.71506 -15.33864 -15.27605 -14.88926 -14.53165 -14.29247 -14.24898 -14.07214 -13.77806 -13.34519 -13.20165 -13.12813 -13.04147 -12.96223 -12.91804 -12.59427 -12.52215 -12.24563 -12.18535 -12.10454 -11.72836 -11.60637 -11.53050 -11.48627 -11.27118 -11.23875 -10.59277 -10.45740 -10.30605 -10.08356 -9.58774 -8.23286 -6.33678 1.41511 1.44347 1.52146 1.86304 2.31533 2.41883 2.55823 3.08891 3.11100 3.37102 3.48331 3.60285 3.85417 4.09262 4.23749 4.25084 4.28986 4.42334 4.46659 4.52979 4.54256 4.57483 4.59446 4.72558 4.79241 4.80116 4.87641 4.88283 4.94155 5.00364 5.06700 5.09721 5.12246 5.16825 5.31779 5.35101 5.37822 5.49895 5.58466 5.60681 5.74597 5.81456 6.13384 6.18925 6.37009 6.79201 6.84770 7.24399 7.35637 7.76368 8.88440 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.030459 B = 0.002565 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.042908 B =10914.084646 C =11015.675213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.379 6.379 4 C 0.084 3.916 5 H 0.106 0.894 6 C -0.144 4.144 7 C 0.178 3.822 8 C 0.084 3.916 9 O -0.584 6.584 10 N -0.714 5.714 11 C 0.703 3.297 12 O -0.625 6.625 13 N -0.739 5.739 14 C 0.166 3.834 15 C 0.026 3.974 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.280 1.280 22 H -0.269 1.269 23 H -0.268 1.268 24 C -0.085 4.085 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.388 0.612 37 H 0.405 0.595 38 H 0.403 0.597 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.006 0.994 42 H 0.008 0.992 43 H 0.266 0.734 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.192 -25.622 -0.062 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.298 6.298 4 C 0.025 3.975 5 H 0.123 0.877 6 C -0.182 4.182 7 C 0.090 3.910 8 C 0.006 3.994 9 O -0.391 6.391 10 N -0.369 5.369 11 C 0.403 3.597 12 O -0.507 6.507 13 N -0.393 5.393 14 C 0.041 3.959 15 C -0.012 4.012 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.205 1.205 22 H -0.194 1.194 23 H -0.193 1.193 24 C -0.086 4.086 25 C -0.174 4.174 26 C -0.188 4.188 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.237 0.763 37 H 0.241 0.759 38 H 0.237 0.763 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.382 -25.284 0.496 29.092 hybrid contribution 0.433 1.165 -0.269 1.272 sum -13.949 -24.119 0.227 27.863 Atomic orbital electron populations 1.21766 0.93396 1.03211 1.02440 1.22721 0.95880 0.82880 1.01091 1.87860 1.19670 1.27849 1.94433 1.22918 0.81886 0.97542 0.95114 0.87661 1.23787 1.03514 0.92220 0.98663 1.21687 0.85218 0.88033 0.96018 1.22309 0.96216 0.98259 0.82595 1.86357 1.42254 1.82369 1.28076 1.44811 1.27311 1.12789 1.51996 1.16118 0.82410 0.81106 0.80067 1.90791 1.38448 1.75086 1.46342 1.45250 1.20910 1.16362 1.56818 1.20970 0.98333 0.80367 0.96185 1.19107 0.91511 0.94652 0.95931 1.21428 1.04148 1.00409 1.32504 0.92392 1.25887 0.95053 1.02846 0.95470 1.70060 1.08168 1.38718 1.39639 0.85492 0.77584 0.78887 0.79042 1.20500 1.19391 1.19293 1.22531 0.96963 0.94995 0.94151 1.21437 0.92781 1.01495 1.01663 1.21567 0.99241 0.99850 0.98128 0.92576 0.89295 0.92592 0.92267 0.92219 0.89927 0.86447 0.90610 0.94065 0.76342 0.75869 0.76254 0.94044 0.94417 0.97612 0.97358 0.92548 0.94389 0.91138 0.90240 0.91880 0.92258 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.58 6.51 71.98 0.47 1.04 16 3 O -0.38 -6.54 6.75 -148.98 -1.01 -7.54 16 4 C 0.08 1.34 3.77 31.12 0.12 1.46 16 5 H 0.11 1.17 7.85 -2.39 -0.02 1.15 16 6 C -0.14 -2.40 6.85 31.12 0.21 -2.19 16 7 C 0.18 4.28 0.72 4.13 0.00 4.29 16 8 C 0.08 2.33 4.66 71.98 0.34 2.66 16 9 O -0.58 -15.99 13.53 -148.98 -2.02 -18.01 16 10 N -0.71 -19.31 4.22 -435.59 -1.84 -21.15 16 11 C 0.70 25.53 7.63 179.06 1.37 26.90 16 12 O -0.63 -27.05 12.88 -4.00 -0.05 -27.10 16 13 N -0.74 -27.59 5.56 -478.52 -2.66 -30.25 16 14 C 0.17 7.55 5.61 86.38 0.48 8.04 16 15 C 0.03 1.33 5.09 29.85 0.15 1.48 16 16 C -0.55 -31.32 9.11 25.60 0.23 -31.08 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.35 5.46 84.65 0.46 0.81 16 19 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 20 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C -0.08 -1.83 1.25 -51.66 -0.06 -1.90 16 25 C -0.12 -2.33 8.49 71.98 0.61 -1.72 16 26 C -0.13 -3.34 7.97 71.98 0.57 -2.76 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.08 1.45 8.10 -2.39 -0.02 1.44 16 33 H 0.12 1.43 7.66 -2.38 -0.02 1.41 16 34 H 0.08 1.89 5.62 -2.39 -0.01 1.87 16 35 H 0.04 1.43 5.75 -2.39 -0.01 1.41 16 36 H 0.39 7.70 9.12 -74.06 -0.68 7.02 16 37 H 0.41 8.79 8.67 -92.71 -0.80 7.99 16 38 H 0.40 13.04 8.49 -92.71 -0.79 12.25 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.04 1.00 7.17 -2.39 -0.02 0.98 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.19 7.34 -2.39 -0.02 1.17 16 47 H 0.06 1.59 6.03 -2.39 -0.01 1.58 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.04 1.25 6.74 -2.39 -0.02 1.23 16 Total: -1.00 -72.98 384.64 -0.87 -73.85 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -1.30 Total: 32.47 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.70 Total: 6.21 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -4.22 Total: -106.29 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -3.07 Total: -52.65 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -72.98 -0.87 -73.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436326736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.078 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds