Wall clock time and date at job start Tue Mar 31 2020 10:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42898 * 109.46824 * 2 1 4 4 C 1.42908 * 113.99763 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.90741 * 18.75039 * 4 3 2 6 6 C 1.53776 * 113.61301 * 247.49981 * 4 3 2 7 7 C 1.53782 * 87.08009 * 220.01881 * 6 4 3 8 8 H 1.08998 * 113.61528 * 270.88323 * 7 6 4 9 9 N 1.46497 * 113.61732 * 139.98121 * 7 6 4 10 10 C 1.34778 * 120.00334 * 107.50563 * 9 7 6 11 11 O 1.21587 * 119.99626 * 359.97438 * 10 9 7 12 12 N 1.34771 * 120.00022 * 180.02562 * 10 9 7 13 13 C 1.46506 * 119.99833 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46973 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46925 * 299.99523 * 14 13 12 16 16 C 1.52992 * 109.47190 * 60.00143 * 14 13 12 17 17 C 1.50703 * 109.46809 * 179.97438 * 14 13 12 18 18 H 1.07999 * 120.00082 * 357.00924 * 17 14 13 19 19 C 1.37880 * 120.00080 * 177.00380 * 17 14 13 20 20 N 1.31512 * 119.99686 * 5.54384 * 19 17 14 21 21 Si 1.86795 * 120.00083 * 185.54335 * 19 17 14 22 22 H 1.48495 * 109.47065 * 84.99930 * 21 19 17 23 23 H 1.48502 * 109.47223 * 204.99830 * 21 19 17 24 24 H 1.48497 * 109.47301 * 325.00080 * 21 19 17 25 25 C 1.53777 * 113.61037 * 149.99988 * 4 3 2 26 26 H 1.08998 * 113.62033 * 25.35486 * 25 4 3 27 27 O 1.42906 * 113.61352 * 254.52851 * 25 4 3 28 28 C 1.42895 * 113.99784 * 109.51208 * 27 25 4 29 29 H 1.08996 * 109.47014 * 59.99969 * 1 2 3 30 30 H 1.09000 * 109.46767 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46797 * 299.99479 * 1 2 3 32 32 H 1.09005 * 109.46716 * 240.00039 * 2 1 3 33 33 H 1.08996 * 109.47014 * 120.00031 * 2 1 3 34 34 H 1.08995 * 113.61582 * 334.56288 * 6 4 3 35 35 H 1.08994 * 113.61683 * 105.47427 * 6 4 3 36 36 H 0.97000 * 120.00150 * 287.50070 * 9 7 6 37 37 H 0.97003 * 120.00496 * 359.97438 * 12 10 9 38 38 H 1.09009 * 109.47024 * 299.99451 * 13 12 10 39 39 H 1.08992 * 109.47020 * 59.99480 * 13 12 10 40 40 H 1.09000 * 109.46899 * 53.93542 * 15 14 13 41 41 H 1.08999 * 109.47190 * 173.93616 * 15 14 13 42 42 H 1.08996 * 109.47181 * 293.93957 * 15 14 13 43 43 H 1.08997 * 109.47616 * 59.99606 * 16 14 13 44 44 H 1.09000 * 109.47025 * 180.02562 * 16 14 13 45 45 H 1.09006 * 109.47116 * 299.99412 * 16 14 13 46 46 H 0.96999 * 120.00121 * 180.02562 * 20 19 17 47 47 H 1.08993 * 109.47486 * 60.00136 * 28 27 25 48 48 H 1.09005 * 109.47086 * 180.02562 * 28 27 25 49 49 H 1.09000 * 109.46953 * 299.99858 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9291 0.5458 -0.3218 6 6 4.0019 2.0465 1.3025 7 6 4.9896 2.8315 0.4233 8 1 5.9140 2.2921 0.2164 9 7 5.2205 4.2037 0.8813 10 6 6.3932 4.5334 1.4581 11 8 7.2593 3.6916 1.5988 12 7 6.6053 5.7957 1.8799 13 6 7.8798 6.1538 2.5074 14 6 7.8610 7.6349 2.8910 15 6 7.6544 8.4842 1.6354 16 6 6.7180 7.8924 3.8748 17 6 9.1717 8.0031 3.5371 18 1 9.9225 7.2452 3.7055 19 6 9.4126 9.3076 3.9131 20 7 8.4601 10.2084 3.8088 21 14 11.0916 9.7953 4.5706 22 1 11.9969 10.1053 3.4351 23 1 10.9551 10.9941 5.4364 24 1 11.6577 8.6742 5.3630 25 6 3.9489 2.7251 -0.7039 26 1 3.2299 3.5443 -0.7148 27 8 4.5205 2.4714 -1.9888 28 6 3.7345 2.9540 -3.0802 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.2979 2.6806 1.8413 35 1 4.4807 1.3052 1.9422 36 1 4.5295 4.8751 0.7693 37 1 5.9143 6.4671 1.7680 38 1 8.0268 5.5490 3.4023 39 1 8.6942 5.9699 1.8067 40 1 6.7617 8.1448 1.1099 41 1 7.5332 9.5295 1.9196 42 1 8.5209 8.3835 0.9819 43 1 6.8652 7.2872 4.7694 44 1 6.7043 8.9475 4.1477 45 1 5.7697 7.6259 3.4079 46 1 8.6296 11.1262 4.0730 47 1 3.6118 4.0333 -2.9903 48 1 4.2361 2.7220 -4.0198 49 1 2.7559 2.4744 -3.0632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458648971.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:29 Heat of formation + Delta-G solvation = -105.213369 kcal Electronic energy + Delta-G solvation = -26869.181060 eV Core-core repulsion = 23025.420167 eV Total energy + Delta-G solvation = -3843.760893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51933 -39.14636 -37.53392 -36.57462 -35.79468 -33.35614 -32.74791 -31.19037 -30.54518 -27.29478 -25.73550 -25.70023 -25.11076 -24.76043 -23.76311 -23.05249 -20.62730 -20.34886 -18.77273 -18.17499 -17.68189 -16.83211 -16.13940 -15.86991 -15.76687 -15.43190 -15.04881 -14.91456 -14.69245 -14.23254 -13.76197 -13.55139 -13.40013 -13.27341 -12.91515 -12.81334 -12.78246 -12.16601 -12.12183 -12.01161 -11.72989 -11.52150 -11.43173 -11.36058 -11.16767 -11.00190 -10.83741 -10.67165 -10.35186 -10.26579 -10.19436 -9.76919 -9.59826 -9.57968 -9.28100 -8.93334 -8.76867 -8.38682 -8.17346 -6.00338 -4.08744 2.83160 3.30911 3.37160 3.40227 3.45966 3.59275 3.71450 4.19957 4.26166 4.41291 4.58106 4.62878 4.72544 4.76197 4.82396 4.99190 5.02311 5.15705 5.18338 5.24555 5.26880 5.38553 5.42770 5.53530 5.67483 5.71898 5.75296 5.90562 6.24336 6.39918 6.53670 6.60879 6.79443 6.83138 6.85074 6.92991 7.01957 7.06075 7.12187 7.32330 7.43645 7.58711 7.72973 8.02385 8.14529 8.40294 8.50013 8.90761 9.06174 9.56407 11.01761 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.002324 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.426490 B =12047.000742 C =12292.281356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.051 3.949 5 H 0.099 0.901 6 C -0.167 4.167 7 C 0.157 3.843 8 H 0.126 0.874 9 N -0.740 5.740 10 C 0.700 3.300 11 O -0.597 6.597 12 N -0.732 5.732 13 C 0.150 3.850 14 C 0.055 3.945 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.058 3.942 26 H 0.099 0.901 27 O -0.371 6.371 28 C 0.030 3.970 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.394 0.606 37 H 0.393 0.607 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.006 0.994 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.005 0.995 46 H 0.259 0.741 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -15.698 -10.228 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.293 6.293 4 C -0.008 4.008 5 H 0.117 0.883 6 C -0.207 4.207 7 C 0.049 3.951 8 H 0.144 0.856 9 N -0.395 5.395 10 C 0.400 3.600 11 O -0.476 6.476 12 N -0.386 5.386 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.187 4.187 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.001 4.001 26 H 0.116 0.884 27 O -0.289 6.289 28 C -0.066 4.066 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.228 0.772 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.103 0.897 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.597 -16.179 -10.064 24.624 hybrid contribution 0.078 0.866 0.196 0.891 sum -15.519 -15.314 -9.868 23.932 Atomic orbital electron populations 1.21753 0.93776 1.02257 1.03113 1.22530 0.95525 0.83845 1.00198 1.87919 1.20225 1.26556 1.94605 1.24086 0.81383 0.98801 0.96536 0.88344 1.23759 0.99018 1.00781 0.97098 1.22100 0.98278 0.83164 0.91521 0.85600 1.44981 1.17233 1.11221 1.66065 1.16064 0.82026 0.83493 0.78436 1.90880 1.44451 1.49443 1.62834 1.45517 1.20395 1.08605 1.64118 1.21581 0.81840 0.98234 0.95622 1.18368 0.95645 0.87572 0.92947 1.21792 0.96498 1.03550 0.96718 1.21836 0.94747 1.03976 0.98126 1.20969 0.99940 0.94033 1.39473 0.92400 1.24881 0.96727 0.96551 0.95360 1.69827 1.31521 1.02760 1.48312 0.86592 0.84521 0.77967 0.78813 1.20649 1.21384 1.19965 1.24611 0.95289 0.97003 0.83219 0.88368 1.87972 1.47269 1.80035 1.13671 1.22812 0.95634 0.98342 0.89861 0.91947 0.91123 0.91784 0.93329 0.93170 0.88521 0.89659 0.77222 0.77193 0.92936 0.92893 0.97505 0.90092 0.95193 0.95458 0.89663 0.97629 0.93053 0.93805 0.89622 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.41 6.50 37.16 0.24 0.65 16 3 O -0.37 -3.66 10.35 -35.23 -0.36 -4.02 16 4 C 0.05 0.49 4.14 -25.92 -0.11 0.38 16 5 H 0.10 0.88 7.87 -51.93 -0.41 0.47 16 6 C -0.17 -1.73 7.71 -25.92 -0.20 -1.93 16 7 C 0.16 1.92 4.07 -67.12 -0.27 1.64 16 8 H 0.13 1.82 7.47 -51.93 -0.39 1.43 16 9 N -0.74 -9.92 5.36 -57.88 -0.31 -10.23 16 10 C 0.70 12.64 8.57 -86.92 -0.74 11.89 16 11 O -0.60 -13.13 15.94 5.29 0.08 -13.04 16 12 N -0.73 -13.29 4.91 -65.22 -0.32 -13.61 16 13 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 14 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.89 8.03 37.16 0.30 -2.59 16 16 C -0.13 -2.92 8.10 37.15 0.30 -2.62 16 17 C -0.51 -13.33 8.01 -34.44 -0.28 -13.61 16 18 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 19 C 0.07 1.75 5.13 -17.82 -0.09 1.66 16 20 N -0.89 -23.70 9.45 55.43 0.52 -23.18 16 21 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.06 0.60 3.87 -25.92 -0.10 0.50 16 26 H 0.10 0.93 7.87 -51.93 -0.41 0.52 16 27 O -0.37 -4.24 10.71 -35.23 -0.38 -4.61 16 28 C 0.03 0.25 10.86 101.05 1.10 1.35 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.39 4.22 8.74 -40.82 -0.36 3.86 16 37 H 0.39 6.37 6.17 -40.82 -0.25 6.12 16 38 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 41 H 0.08 2.00 6.25 -51.93 -0.32 1.68 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 2.13 6.10 -51.93 -0.32 1.81 16 45 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 46 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -30.49 391.97 -8.07 -38.56 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.62 Total: 7.13 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 0.43 Total: 1.25 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.11 Total: -47.01 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.66 Total: -21.68 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.49 -8.07 -38.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458648971.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.657 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds