Wall clock time and date at job start Tue Mar 31 2020 10:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47150 * 2 1 4 4 C 1.42897 * 114.00135 * 180.02562 * 3 2 1 5 5 H 1.09008 * 112.90708 * 18.74534 * 4 3 2 6 6 C 1.53775 * 113.61612 * 247.49907 * 4 3 2 7 7 C 1.53777 * 87.07992 * 270.87822 * 6 4 3 8 8 H 1.09005 * 113.61136 * 89.11634 * 7 6 4 9 9 N 1.46498 * 113.61997 * 220.01771 * 7 6 4 10 10 C 1.34780 * 119.99923 * 252.50224 * 9 7 6 11 11 O 1.21583 * 119.99989 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99536 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99461 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46762 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47164 * 299.99407 * 14 13 12 16 16 C 1.52999 * 109.47034 * 59.99926 * 14 13 12 17 17 C 1.50703 * 109.46748 * 179.97438 * 14 13 12 18 18 H 1.07996 * 120.00409 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99707 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00015 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00186 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47289 * 59.99041 * 21 19 17 23 23 H 1.48494 * 109.47453 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.46559 * 299.99807 * 21 19 17 25 25 C 1.53779 * 113.61805 * 149.99521 * 4 3 2 26 26 H 1.09002 * 113.61731 * 203.66545 * 25 4 3 27 27 O 1.42898 * 113.68762 * 334.56103 * 25 4 3 28 28 C 1.42902 * 113.99945 * 249.05729 * 27 25 4 29 29 H 1.09000 * 109.47190 * 299.99857 * 1 2 3 30 30 H 1.09003 * 109.46960 * 60.00216 * 1 2 3 31 31 H 1.09007 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46482 * 239.99546 * 2 1 3 33 33 H 1.08998 * 109.46873 * 120.00232 * 2 1 3 34 34 H 1.09008 * 113.61752 * 156.33231 * 6 4 3 35 35 H 1.08996 * 113.61616 * 25.42691 * 6 4 3 36 36 H 0.96996 * 120.00000 * 72.49123 * 9 7 6 37 37 H 0.96996 * 120.00387 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.47023 * 299.99147 * 13 12 10 39 39 H 1.08992 * 109.47720 * 59.99323 * 13 12 10 40 40 H 1.08998 * 109.46800 * 60.00431 * 15 14 13 41 41 H 1.09005 * 109.46808 * 179.97438 * 15 14 13 42 42 H 1.08999 * 109.47393 * 300.00347 * 15 14 13 43 43 H 1.08998 * 109.47702 * 59.99467 * 16 14 13 44 44 H 1.09002 * 109.46975 * 180.02562 * 16 14 13 45 45 H 1.08998 * 109.47255 * 299.99768 * 16 14 13 46 46 H 0.97006 * 120.00088 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.47251 * 179.97438 * 28 27 25 48 48 H 1.08997 * 109.47415 * 300.00867 * 28 27 25 49 49 H 1.09004 * 109.47039 * 60.00584 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9288 0.5458 -0.3236 6 6 4.0030 2.0461 1.3010 7 6 3.8397 3.4325 0.6560 8 1 2.8649 3.8857 0.8360 9 7 4.9524 4.3439 0.9342 10 6 4.7819 5.3756 1.7845 11 8 3.7045 5.5501 2.3204 12 7 5.8057 6.2139 2.0408 13 6 5.6206 7.3349 2.9656 14 6 6.9269 8.1235 3.0790 15 6 8.0324 7.2059 3.6050 16 6 7.3208 8.6587 1.7009 17 6 6.7362 9.2771 4.0298 18 1 5.7790 9.4325 4.5052 19 6 7.7835 10.1346 4.2919 20 7 8.9489 9.9456 3.7126 21 14 7.5475 11.5642 5.4710 22 1 7.1656 11.0447 6.8087 23 1 8.8149 12.3303 5.5801 24 1 6.4739 12.4544 4.9608 25 6 3.9484 2.7252 -0.7052 26 1 4.9717 2.6345 -1.0696 27 8 3.0518 3.2406 -1.6913 28 6 3.5228 3.1036 -3.0335 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.0412 1.7696 1.4850 35 1 3.3621 1.8901 2.1688 36 1 5.8118 4.2049 0.5065 37 1 6.6653 6.0744 1.6136 38 1 4.8327 7.9884 2.5911 39 1 5.3402 6.9537 3.9474 40 1 8.1701 6.3718 2.9170 41 1 8.9631 7.7676 3.6854 42 1 7.7517 6.8246 4.5867 43 1 6.5331 9.3124 1.3262 44 1 8.2516 9.2201 1.7817 45 1 7.4585 7.8246 1.0129 46 1 9.6859 10.5488 3.8973 47 1 2.7858 3.5179 -3.7213 48 1 4.4654 3.6395 -3.1442 49 1 3.6764 2.0482 -3.2587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458648973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:34 Heat of formation + Delta-G solvation = -100.293201 kcal Electronic energy + Delta-G solvation = -27005.645846 eV Core-core repulsion = 23162.098307 eV Total energy + Delta-G solvation = -3843.547539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50539 -39.11384 -37.35940 -36.53240 -35.71352 -33.32400 -32.71415 -31.03333 -30.49715 -27.26874 -25.74141 -25.69112 -25.12923 -24.73340 -23.76992 -23.10819 -20.59989 -20.22555 -18.75312 -18.13118 -17.52158 -16.73915 -16.05218 -15.91454 -15.76317 -15.32042 -14.95655 -14.86626 -14.68689 -14.12003 -13.86300 -13.52426 -13.26632 -13.15247 -12.91840 -12.81125 -12.73707 -12.25754 -12.13704 -11.88258 -11.72194 -11.59968 -11.37271 -11.26017 -11.15884 -10.82801 -10.80701 -10.69865 -10.34699 -10.17918 -9.96924 -9.71094 -9.59420 -9.51608 -9.26043 -8.90095 -8.76333 -8.38031 -8.15078 -5.99055 -4.08729 3.02153 3.23648 3.32778 3.36603 3.41083 3.64012 3.79769 4.23134 4.28048 4.41611 4.66456 4.67678 4.77191 4.80325 4.84335 5.00345 5.07733 5.10021 5.15638 5.24893 5.27638 5.44869 5.45433 5.63766 5.73422 5.79031 5.87441 5.99005 6.26846 6.41584 6.54534 6.67789 6.84498 6.85929 6.86538 6.94954 7.07120 7.14685 7.14736 7.34572 7.45997 7.59263 7.72910 8.04523 8.15850 8.41807 8.53572 8.91027 9.10771 9.56744 11.02339 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.002387 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.879912 B =11726.697406 C =12108.314574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.348 6.348 4 C 0.054 3.946 5 H 0.078 0.922 6 C -0.173 4.173 7 C 0.160 3.840 8 H 0.128 0.872 9 N -0.744 5.744 10 C 0.699 3.301 11 O -0.596 6.596 12 N -0.733 5.733 13 C 0.150 3.850 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.504 4.504 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.055 3.945 26 H 0.098 0.902 27 O -0.356 6.356 28 C 0.028 3.972 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.392 0.608 37 H 0.393 0.607 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.005 0.995 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.005 0.995 46 H 0.260 0.740 47 H 0.085 0.915 48 H 0.041 0.959 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -20.783 -12.206 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.266 6.266 4 C -0.006 4.006 5 H 0.096 0.904 6 C -0.213 4.213 7 C 0.053 3.947 8 H 0.145 0.855 9 N -0.399 5.399 10 C 0.399 3.601 11 O -0.474 6.474 12 N -0.387 5.387 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.005 4.005 26 H 0.116 0.884 27 O -0.273 6.273 28 C -0.068 4.068 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.225 0.775 37 H 0.227 0.773 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.024 0.976 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.024 0.976 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.060 0.940 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.026 -20.223 -11.637 24.674 hybrid contribution 1.231 0.247 0.075 1.258 sum -6.795 -19.976 -11.562 24.060 Atomic orbital electron populations 1.21735 0.93619 1.02064 1.03449 1.22542 0.95794 0.83981 0.99756 1.88015 1.18433 1.25781 1.94369 1.23415 0.82967 0.97564 0.96616 0.90371 1.23842 1.02066 0.96969 0.98421 1.22501 0.92635 0.87950 0.91610 0.85461 1.45120 1.14455 1.30582 1.49764 1.16095 0.84778 0.79443 0.79830 1.90888 1.25664 1.75443 1.55405 1.45511 1.12856 1.30585 1.49790 1.21577 1.00120 0.85081 0.90491 1.18363 0.89101 0.92884 0.94154 1.21814 1.03025 0.96637 0.97222 1.21816 1.03023 0.98303 0.95577 1.20955 0.97546 1.10246 1.25544 0.92454 1.24880 0.95153 0.97575 0.95959 1.69799 1.01881 1.37782 1.43115 0.86627 0.77273 0.82380 0.81534 1.20283 1.21383 1.20281 1.24660 0.93653 0.93126 0.89011 0.88416 1.88084 1.43529 1.81343 1.14372 1.22813 0.99990 0.99918 0.84114 0.91655 0.91734 0.91246 0.93612 0.93433 0.88760 0.89355 0.77507 0.77290 0.92957 0.92978 0.97587 0.89683 0.95461 0.95445 0.89681 0.97591 0.93012 0.89615 0.94024 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.46 6.50 37.16 0.24 0.70 16 3 O -0.35 -3.95 9.89 -50.21 -0.50 -4.45 16 4 C 0.05 0.51 4.32 -25.92 -0.11 0.40 16 5 H 0.08 0.55 7.87 -51.92 -0.41 0.14 16 6 C -0.17 -1.79 7.71 -25.92 -0.20 -1.99 16 7 C 0.16 2.07 4.00 -67.12 -0.27 1.80 16 8 H 0.13 2.12 7.47 -51.93 -0.39 1.74 16 9 N -0.74 -10.10 5.36 -57.88 -0.31 -10.41 16 10 C 0.70 12.91 8.57 -86.91 -0.74 12.17 16 11 O -0.60 -13.55 15.94 5.29 0.08 -13.47 16 12 N -0.73 -13.48 4.96 -65.22 -0.32 -13.80 16 13 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 14 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.50 -13.37 8.01 -34.44 -0.28 -13.64 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.75 9.35 55.43 0.52 -23.24 16 21 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.06 0.56 3.99 -25.92 -0.10 0.46 16 26 H 0.10 0.74 7.86 -51.93 -0.41 0.33 16 27 O -0.36 -4.32 10.34 -50.21 -0.52 -4.84 16 28 C 0.03 0.24 10.85 101.05 1.10 1.33 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.39 4.05 8.74 -40.82 -0.36 3.70 16 37 H 0.39 6.39 6.18 -40.82 -0.25 6.14 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 41 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 45 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 46 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -31.65 391.27 -8.36 -40.01 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.62 Total: 7.01 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 0.43 Total: 1.38 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.12 Total: -47.45 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.93 Total: -22.76 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.65 -8.36 -40.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458648973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.285 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds