Wall clock time and date at job start Tue Mar 31 2020 10:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46931 * 2 1 4 4 C 1.42902 * 113.99730 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47047 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.46914 * 64.99911 * 5 4 3 7 7 C 1.42898 * 113.99650 * 179.97438 * 6 5 4 8 8 C 1.53502 * 114.20241 * 210.00095 * 7 6 5 9 9 N 1.47071 * 87.98422 * 220.14917 * 8 7 6 10 10 C 1.34774 * 136.05567 * 206.86770 * 9 8 7 11 11 O 1.21591 * 120.00125 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99815 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99694 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46872 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46873 * 299.99881 * 14 13 12 16 16 C 1.52993 * 109.47215 * 59.99482 * 14 13 12 17 17 C 1.50695 * 109.47100 * 179.97438 * 14 13 12 18 18 H 1.07999 * 120.00029 * 357.00467 * 17 14 13 19 19 C 1.37878 * 119.99736 * 177.00713 * 17 14 13 20 20 N 1.31511 * 120.00479 * 5.53622 * 19 17 14 21 21 Si 1.86808 * 119.99690 * 185.54063 * 19 17 14 22 22 H 1.48498 * 109.47285 * 85.00028 * 21 19 17 23 23 H 1.48501 * 109.46992 * 205.00012 * 21 19 17 24 24 H 1.48498 * 109.46944 * 324.99630 * 21 19 17 25 25 C 1.47069 * 87.88363 * 27.12063 * 9 8 7 26 26 H 1.09003 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47005 * 299.99933 * 1 2 3 28 28 H 1.09001 * 109.46792 * 59.99996 * 1 2 3 29 29 H 1.08998 * 109.47005 * 240.00067 * 2 1 3 30 30 H 1.08996 * 109.47117 * 120.00323 * 2 1 3 31 31 H 1.08998 * 109.47408 * 60.00695 * 4 3 2 32 32 H 1.08997 * 109.47380 * 299.99617 * 4 3 2 33 33 H 1.08995 * 109.46811 * 305.00135 * 5 4 3 34 34 H 1.09005 * 109.46991 * 184.99696 * 5 4 3 35 35 H 1.08999 * 113.28599 * 343.06579 * 7 6 5 36 36 H 1.09005 * 113.46727 * 105.37334 * 8 7 6 37 37 H 1.08996 * 113.52515 * 334.93824 * 8 7 6 38 38 H 0.96997 * 119.99875 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.47223 * 299.99061 * 13 12 10 40 40 H 1.08997 * 109.47416 * 59.99897 * 13 12 10 41 41 H 1.08996 * 109.47196 * 53.93196 * 15 14 13 42 42 H 1.09003 * 109.47042 * 173.93596 * 15 14 13 43 43 H 1.09002 * 109.46940 * 293.93131 * 15 14 13 44 44 H 1.09007 * 109.46891 * 60.00073 * 16 14 13 45 45 H 1.09000 * 109.47714 * 180.02562 * 16 14 13 46 46 H 1.09007 * 109.47505 * 300.00352 * 16 14 13 47 47 H 0.96998 * 120.00150 * 179.97438 * 20 19 17 48 48 H 1.09001 * 113.46617 * 87.66250 * 25 9 8 49 49 H 1.08998 * 113.46336 * 218.10058 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3976 3.5451 1.2223 7 6 3.7193 4.9336 1.3253 8 6 3.9549 5.4200 2.7620 9 7 3.2256 6.6479 2.4106 10 6 3.2205 7.9279 2.8324 11 8 3.9661 8.2761 3.7275 12 7 2.3880 8.8218 2.2626 13 6 2.3821 10.2131 2.7216 14 6 1.3551 11.0114 1.9159 15 6 1.7239 10.9655 0.4317 16 6 -0.0343 10.4026 2.1152 17 6 1.3485 12.4424 2.3884 18 1 1.9753 12.7408 3.2157 19 6 0.5423 13.3706 1.7643 20 7 -0.3005 12.9876 0.8303 21 14 0.6472 15.1726 2.2457 22 1 1.7437 15.8249 1.4859 23 1 -0.6397 15.8443 1.9325 24 1 0.9208 15.2810 3.7012 25 6 2.4998 5.8627 1.4007 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8340 0.9765 -0.8892 32 1 3.8333 0.9768 0.8908 33 1 3.3499 3.4416 -0.8406 34 1 4.9083 3.0255 -0.0879 35 1 4.4814 5.2532 0.6146 36 1 5.0058 5.5912 2.9955 37 1 3.4492 4.8151 3.5146 38 1 1.7930 8.5440 1.5488 39 1 2.1197 10.2458 3.7789 40 1 3.3718 10.6469 2.5791 41 1 1.8340 9.9279 0.1166 42 1 0.9368 11.4414 -0.1532 43 1 2.6639 11.4946 0.2744 44 1 -0.2970 10.4353 3.1726 45 1 -0.7659 10.9710 1.5409 46 1 -0.0298 9.3674 1.7737 47 1 -0.8679 13.6406 0.3916 48 1 1.6060 5.3752 1.7900 49 1 2.3136 6.4103 0.4768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459251578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:06 Heat of formation + Delta-G solvation = -83.811855 kcal Electronic energy + Delta-G solvation = -26413.084974 eV Core-core repulsion = 22570.252120 eV Total energy + Delta-G solvation = -3842.832854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45820 -38.83077 -38.20284 -36.67871 -36.01926 -33.18926 -32.13638 -30.93622 -29.72862 -28.31698 -26.15288 -25.69984 -25.44233 -24.51764 -23.14095 -22.96095 -21.90328 -19.46020 -18.76302 -17.98069 -17.51728 -17.22608 -16.26476 -16.02726 -15.69234 -15.52039 -15.07308 -14.86922 -14.68911 -14.10966 -13.94221 -13.48889 -13.42533 -13.18662 -12.89159 -12.76752 -12.71949 -12.55727 -12.15385 -12.02949 -11.83000 -11.61530 -11.40935 -11.32284 -11.23038 -11.14285 -10.83964 -10.67136 -10.35261 -10.19753 -9.98602 -9.84269 -9.67825 -9.59555 -9.29137 -8.77661 -8.73093 -8.37750 -8.12718 -6.00226 -4.08793 2.62237 3.27293 3.30912 3.33460 3.37166 3.41243 3.71336 4.11438 4.34181 4.46393 4.55342 4.67187 4.68647 4.79806 4.84033 4.93267 4.98540 5.04415 5.19795 5.26766 5.26971 5.35607 5.40829 5.44491 5.52314 5.56171 5.70830 5.74979 5.79099 6.26909 6.38919 6.54197 6.80101 6.82978 6.85311 6.92261 6.96258 7.05740 7.12025 7.39037 7.57275 7.58764 7.73057 8.02040 8.14625 8.40261 8.46473 8.90561 9.05182 9.56332 11.01898 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.002230 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.665884 B =12552.216481 C =13358.686516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.062 3.938 6 O -0.359 6.359 7 C 0.050 3.950 8 C 0.128 3.872 9 N -0.667 5.667 10 C 0.734 3.266 11 O -0.594 6.594 12 N -0.728 5.728 13 C 0.150 3.850 14 C 0.056 3.944 15 C -0.127 4.127 16 C -0.129 4.129 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.085 3.915 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.394 0.606 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.005 0.995 42 H 0.081 0.919 43 H 0.029 0.971 44 H 0.027 0.973 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.260 0.740 48 H 0.090 0.910 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -25.679 -5.548 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.013 4.013 5 C -0.015 4.015 6 O -0.277 6.277 7 C -0.009 4.009 8 C 0.003 3.997 9 N -0.410 5.410 10 C 0.437 3.563 11 O -0.472 6.472 12 N -0.382 5.382 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.185 4.185 16 C -0.187 4.187 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.039 4.039 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.229 0.771 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.024 0.976 42 H 0.100 0.900 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.070 0.930 48 H 0.108 0.892 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.316 -24.988 -4.776 25.990 hybrid contribution -0.023 0.706 -0.327 0.779 sum 5.293 -24.282 -5.102 25.371 Atomic orbital electron populations 1.21743 0.93621 1.02176 1.03415 1.22458 0.95828 0.83814 0.99851 1.87987 1.20395 1.26228 1.95369 1.22515 0.82356 0.95538 1.00863 1.22623 0.98440 0.92576 0.87841 1.87990 1.80230 1.21644 1.37812 1.23938 0.97359 0.81299 0.98291 1.22891 0.98329 0.82611 0.95826 1.48240 1.44636 1.06196 1.41949 1.15273 0.81480 0.78178 0.81411 1.90895 1.45251 1.77809 1.33277 1.45464 1.41434 1.10599 1.40710 1.21617 1.00430 0.76820 0.98387 1.18372 0.90339 0.93896 0.91903 1.21792 1.01263 0.96287 0.99180 1.21838 1.00994 0.96057 0.99808 1.20959 1.24516 0.92280 1.16675 0.92375 1.24882 0.94806 0.98759 0.95051 1.69827 1.23068 1.33657 1.25851 0.86588 0.77248 0.85073 0.78958 1.20647 1.21362 1.19960 1.23429 0.96958 0.90997 0.92558 0.91192 0.91615 0.91809 0.93612 0.93417 0.91848 0.92378 0.91999 0.91448 0.87889 0.90138 0.89506 0.77127 0.92873 0.92855 0.97587 0.90032 0.95180 0.95430 0.89606 0.97667 0.93031 0.89190 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.39 6.66 37.16 0.25 0.63 16 3 O -0.38 -3.57 10.31 -40.08 -0.41 -3.98 16 4 C 0.06 0.44 6.32 37.16 0.23 0.67 16 5 C 0.06 0.44 6.16 37.16 0.23 0.67 16 6 O -0.36 -3.54 10.37 -40.08 -0.42 -3.96 16 7 C 0.05 0.49 4.66 -26.21 -0.12 0.37 16 8 C 0.13 1.52 8.46 -8.50 -0.07 1.45 16 9 N -0.67 -10.05 3.69 -191.02 -0.70 -10.76 16 10 C 0.73 14.34 8.79 -86.92 -0.76 13.58 16 11 O -0.59 -13.88 17.12 5.29 0.09 -13.78 16 12 N -0.73 -14.10 4.91 -65.22 -0.32 -14.42 16 13 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 15 C -0.13 -2.93 8.03 37.16 0.30 -2.63 16 16 C -0.13 -3.00 8.10 37.15 0.30 -2.70 16 17 C -0.51 -13.46 8.01 -34.44 -0.28 -13.73 16 18 H 0.06 1.56 7.75 -52.49 -0.41 1.16 16 19 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 20 N -0.89 -23.86 9.45 55.43 0.52 -23.33 16 21 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.08 0.97 8.13 -8.50 -0.07 0.90 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.85 7.88 -51.93 -0.41 0.45 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.39 6.99 5.87 -40.82 -0.24 6.75 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.01 0.11 6.71 -51.93 -0.35 -0.24 16 42 H 0.08 2.04 6.25 -51.93 -0.32 1.71 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 2.18 6.10 -51.93 -0.32 1.86 16 46 H 0.00 0.09 6.86 -51.92 -0.36 -0.27 16 47 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -31.75 394.61 -8.84 -40.58 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.72 Total: 2.85 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 0.20 Total: 4.91 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.50 Total: -48.51 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.74 Total: -21.73 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.75 -8.84 -40.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459251578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.229 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds