Wall clock time and date at job start Tue Mar 31 2020 10:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46931 * 2 1 4 4 C 1.42902 * 113.99730 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47047 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.46914 * 64.99911 * 5 4 3 7 7 C 1.42898 * 113.99650 * 179.97438 * 6 5 4 8 8 C 1.53502 * 114.20241 * 210.00095 * 7 6 5 9 9 N 1.47071 * 87.98422 * 220.14917 * 8 7 6 10 10 C 1.34774 * 136.05567 * 206.86770 * 9 8 7 11 11 O 1.21591 * 120.00125 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99815 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99694 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46872 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46873 * 299.99881 * 14 13 12 16 16 C 1.52993 * 109.47215 * 59.99482 * 14 13 12 17 17 C 1.50695 * 109.47100 * 179.97438 * 14 13 12 18 18 H 1.07999 * 120.00029 * 357.00467 * 17 14 13 19 19 C 1.37878 * 119.99736 * 177.00713 * 17 14 13 20 20 N 1.31511 * 120.00479 * 5.53622 * 19 17 14 21 21 Si 1.86808 * 119.99690 * 185.54063 * 19 17 14 22 22 H 1.48498 * 109.47285 * 85.00028 * 21 19 17 23 23 H 1.48501 * 109.46992 * 205.00012 * 21 19 17 24 24 H 1.48498 * 109.46944 * 324.99630 * 21 19 17 25 25 C 1.47069 * 87.88363 * 27.12063 * 9 8 7 26 26 H 1.09003 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47005 * 299.99933 * 1 2 3 28 28 H 1.09001 * 109.46792 * 59.99996 * 1 2 3 29 29 H 1.08998 * 109.47005 * 240.00067 * 2 1 3 30 30 H 1.08996 * 109.47117 * 120.00323 * 2 1 3 31 31 H 1.08998 * 109.47408 * 60.00695 * 4 3 2 32 32 H 1.08997 * 109.47380 * 299.99617 * 4 3 2 33 33 H 1.08995 * 109.46811 * 305.00135 * 5 4 3 34 34 H 1.09005 * 109.46991 * 184.99696 * 5 4 3 35 35 H 1.08999 * 113.28599 * 343.06579 * 7 6 5 36 36 H 1.09005 * 113.46727 * 105.37334 * 8 7 6 37 37 H 1.08996 * 113.52515 * 334.93824 * 8 7 6 38 38 H 0.96997 * 119.99875 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.47223 * 299.99061 * 13 12 10 40 40 H 1.08997 * 109.47416 * 59.99897 * 13 12 10 41 41 H 1.08996 * 109.47196 * 53.93196 * 15 14 13 42 42 H 1.09003 * 109.47042 * 173.93596 * 15 14 13 43 43 H 1.09002 * 109.46940 * 293.93131 * 15 14 13 44 44 H 1.09007 * 109.46891 * 60.00073 * 16 14 13 45 45 H 1.09000 * 109.47714 * 180.02562 * 16 14 13 46 46 H 1.09007 * 109.47505 * 300.00352 * 16 14 13 47 47 H 0.96998 * 120.00150 * 179.97438 * 20 19 17 48 48 H 1.09001 * 113.46617 * 87.66250 * 25 9 8 49 49 H 1.08998 * 113.46336 * 218.10058 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3976 3.5451 1.2223 7 6 3.7193 4.9336 1.3253 8 6 3.9549 5.4200 2.7620 9 7 3.2256 6.6479 2.4106 10 6 3.2205 7.9279 2.8324 11 8 3.9661 8.2761 3.7275 12 7 2.3880 8.8218 2.2626 13 6 2.3821 10.2131 2.7216 14 6 1.3551 11.0114 1.9159 15 6 1.7239 10.9655 0.4317 16 6 -0.0343 10.4026 2.1152 17 6 1.3485 12.4424 2.3884 18 1 1.9753 12.7408 3.2157 19 6 0.5423 13.3706 1.7643 20 7 -0.3005 12.9876 0.8303 21 14 0.6472 15.1726 2.2457 22 1 1.7437 15.8249 1.4859 23 1 -0.6397 15.8443 1.9325 24 1 0.9208 15.2810 3.7012 25 6 2.4998 5.8627 1.4007 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8340 0.9765 -0.8892 32 1 3.8333 0.9768 0.8908 33 1 3.3499 3.4416 -0.8406 34 1 4.9083 3.0255 -0.0879 35 1 4.4814 5.2532 0.6146 36 1 5.0058 5.5912 2.9955 37 1 3.4492 4.8151 3.5146 38 1 1.7930 8.5440 1.5488 39 1 2.1197 10.2458 3.7789 40 1 3.3718 10.6469 2.5791 41 1 1.8340 9.9279 0.1166 42 1 0.9368 11.4414 -0.1532 43 1 2.6639 11.4946 0.2744 44 1 -0.2970 10.4353 3.1726 45 1 -0.7659 10.9710 1.5409 46 1 -0.0298 9.3674 1.7737 47 1 -0.8679 13.6406 0.3916 48 1 1.6060 5.3752 1.7900 49 1 2.3136 6.4103 0.4768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459251578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:05 Heat of formation + Delta-G solvation = -104.473437 kcal Electronic energy + Delta-G solvation = -26413.980927 eV Core-core repulsion = 22570.252120 eV Total energy + Delta-G solvation = -3843.728807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61500 -39.94431 -39.00748 -38.09776 -37.23880 -34.98460 -32.87726 -32.57706 -30.54290 -29.34090 -27.58186 -27.43226 -27.10052 -26.21253 -23.62951 -23.50638 -22.99347 -20.83569 -20.61144 -19.14663 -18.35341 -17.82210 -17.79113 -17.21083 -16.91474 -16.67921 -16.42379 -15.99338 -15.83885 -15.40854 -15.01620 -14.86118 -14.49703 -14.48061 -14.12062 -14.01622 -13.90844 -13.56444 -13.26058 -13.22340 -13.08199 -12.78872 -12.67964 -12.59816 -12.40024 -12.25325 -12.16192 -12.14328 -12.03179 -11.81394 -11.49526 -11.44016 -11.17738 -10.72431 -10.51901 -10.44341 -10.40178 -10.19683 -9.55028 -8.02855 -6.17213 1.38412 1.43667 1.46268 1.54247 2.07634 2.45629 2.70364 2.81172 3.00458 3.21076 3.32864 3.86708 4.01145 4.19912 4.24484 4.30744 4.32532 4.41079 4.44292 4.50898 4.51536 4.53757 4.58030 4.60041 4.62484 4.69349 4.71925 4.75754 4.93814 4.95431 4.98743 5.03811 5.07866 5.10854 5.17934 5.30770 5.35538 5.58788 5.65809 5.68176 6.12088 6.17241 6.19617 6.24716 6.37074 6.42718 6.86216 7.00163 7.49827 7.54615 8.96988 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.002230 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.665884 B =12552.216481 C =13358.686516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.411 6.411 4 C 0.059 3.941 5 C 0.055 3.945 6 O -0.374 6.374 7 C 0.075 3.925 8 C 0.119 3.881 9 N -0.670 5.670 10 C 0.730 3.270 11 O -0.639 6.639 12 N -0.722 5.722 13 C 0.167 3.833 14 C 0.051 3.949 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.529 4.529 18 H 0.045 0.955 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.946 3.054 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.277 1.277 25 C 0.081 3.919 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.403 0.597 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.064 0.936 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.093 0.907 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -27.429 -6.831 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.331 6.331 4 C -0.017 4.017 5 C -0.021 4.021 6 O -0.292 6.292 7 C 0.015 3.985 8 C -0.004 4.004 9 N -0.411 5.411 10 C 0.433 3.567 11 O -0.522 6.522 12 N -0.377 5.377 13 C 0.043 3.957 14 C 0.051 3.949 15 C -0.174 4.174 16 C -0.176 4.176 17 C -0.567 4.567 18 H 0.064 0.936 19 C -0.172 4.172 20 N -0.537 5.537 21 Si 0.773 3.227 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.202 1.202 25 C -0.042 4.042 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.240 0.760 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.111 0.889 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.732 -26.807 -6.097 28.083 hybrid contribution -0.158 1.115 0.058 1.128 sum 5.575 -25.692 -6.039 26.974 Atomic orbital electron populations 1.21772 0.93665 1.03133 1.02418 1.22604 0.95909 0.83103 1.00840 1.87945 1.21867 1.27690 1.95598 1.22689 0.81395 0.95561 1.02063 1.22884 1.00017 0.92558 0.86659 1.87977 1.80548 1.21293 1.39343 1.23681 0.96542 0.81374 0.96880 1.23147 0.98232 0.81233 0.97780 1.48211 1.45180 1.05428 1.42306 1.15350 0.80927 0.79470 0.80942 1.90856 1.46929 1.79138 1.35234 1.45165 1.41889 1.09569 1.41030 1.21177 0.99036 0.78335 0.97144 1.18373 0.91042 0.92950 0.92562 1.21623 0.99853 0.97773 0.98129 1.21674 0.99859 0.97265 0.98832 1.21224 1.24639 0.94162 1.16710 0.93646 1.25466 0.94619 1.01895 0.95195 1.69925 1.23161 1.34481 1.26155 0.85755 0.77291 0.81221 0.78418 1.20342 1.20849 1.20162 1.23673 0.97701 0.90843 0.91985 0.89318 0.92947 0.92400 0.92056 0.92906 0.89477 0.92270 0.91834 0.88924 0.85778 0.89926 0.89137 0.76003 0.94670 0.94318 0.94653 0.92005 0.96149 0.96399 0.91702 0.94937 0.92993 0.88930 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.41 -7.04 10.31 -144.35 -1.49 -8.53 16 4 C 0.06 0.67 6.32 71.98 0.45 1.12 16 5 C 0.05 0.63 6.16 71.98 0.44 1.07 16 6 O -0.37 -6.42 10.37 -144.35 -1.50 -7.92 16 7 C 0.07 1.25 4.66 30.93 0.14 1.39 16 8 C 0.12 2.64 8.46 83.18 0.70 3.34 16 9 N -0.67 -19.21 3.69 -877.01 -3.24 -22.45 16 10 C 0.73 28.18 8.79 179.05 1.57 29.76 16 11 O -0.64 -30.20 17.12 -4.00 -0.07 -30.26 16 12 N -0.72 -27.40 4.91 -478.52 -2.35 -29.75 16 13 C 0.17 7.52 4.50 86.38 0.39 7.91 16 14 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 15 C -0.12 -5.24 8.03 71.98 0.58 -4.66 16 16 C -0.12 -5.44 8.10 71.98 0.58 -4.86 16 17 C -0.53 -28.47 8.01 25.60 0.20 -28.26 16 18 H 0.05 2.50 7.75 -2.91 -0.02 2.47 16 19 C 0.03 1.50 5.13 84.66 0.43 1.94 16 20 N -0.90 -48.38 9.45 21.45 0.20 -48.17 16 21 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 C 0.08 1.66 8.13 83.18 0.68 2.34 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.12 1.60 7.88 -2.39 -0.02 1.58 16 36 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.40 13.56 5.87 -92.71 -0.54 13.02 16 39 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.03 1.34 6.71 -2.39 -0.02 1.33 16 42 H 0.06 3.05 6.25 -2.39 -0.01 3.04 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.06 3.27 6.10 -2.39 -0.01 3.26 16 46 H 0.03 1.27 6.86 -2.38 -0.02 1.25 16 47 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 48 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -68.67 394.61 1.34 -67.33 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.37 Total: 21.03 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 7.38 Total: 13.60 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -5.38 Total: -100.37 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -3.05 Total: -46.71 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -68.67 1.34 -67.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459251578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.144 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds