Wall clock time and date at job start Tue Mar 31 2020 11:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47231 * 2 1 4 4 C 1.53000 * 109.47542 * 65.00075 * 3 2 1 5 5 C 1.52987 * 109.47553 * 185.75501 * 4 3 2 6 6 C 1.52998 * 109.47137 * 185.00381 * 3 2 1 7 7 N 1.46900 * 109.47513 * 65.15622 * 6 3 2 8 8 C 1.46896 * 111.00235 * 199.18780 * 7 6 3 9 9 C 1.50705 * 109.46886 * 65.12905 * 8 7 6 10 10 H 1.08003 * 119.99897 * 4.72004 * 9 8 7 11 11 C 1.37870 * 119.99788 * 184.72839 * 9 8 7 12 12 N 1.31520 * 120.00360 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99861 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47241 * 89.99578 * 13 11 9 15 15 H 1.48500 * 109.46811 * 209.99690 * 13 11 9 16 16 H 1.48504 * 109.46871 * 329.99416 * 13 11 9 17 17 C 1.46901 * 110.99672 * 75.23434 * 7 6 3 18 18 C 1.50702 * 109.47370 * 190.00062 * 17 7 6 19 19 C 1.38385 * 119.84747 * 270.30460 * 18 17 7 20 20 C 1.37924 * 120.15128 * 180.25546 * 19 18 17 21 21 C 1.39656 * 119.84486 * 359.44268 * 20 19 18 22 22 C 1.43199 * 120.15088 * 180.29881 * 21 20 19 23 23 N 9.15403 * 108.76972 * 262.31744 * 2 1 3 24 24 C 1.39617 * 119.69666 * 0.27666 * 21 20 19 25 25 C 1.50700 * 120.07274 * 180.02562 * 24 21 20 26 26 C 1.37965 * 119.84650 * 0.02562 * 24 21 20 27 27 H 1.09006 * 109.46852 * 299.99920 * 1 2 3 28 28 H 1.09000 * 109.47027 * 59.99807 * 1 2 3 29 29 H 1.08997 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46417 * 239.99969 * 2 1 3 31 31 H 1.09000 * 109.47027 * 120.00192 * 2 1 3 32 32 H 1.09006 * 109.47189 * 305.00155 * 3 2 1 33 33 H 1.09007 * 109.46701 * 305.75459 * 4 3 2 34 34 H 1.08997 * 109.47014 * 65.74827 * 4 3 2 35 35 H 1.08999 * 109.47525 * 183.65088 * 5 4 3 36 36 H 1.09005 * 109.47434 * 303.64692 * 5 4 3 37 37 H 1.09000 * 109.47366 * 63.64859 * 5 4 3 38 38 H 1.08999 * 109.47127 * 305.15882 * 6 3 2 39 39 H 1.09002 * 109.47218 * 185.16105 * 6 3 2 40 40 H 1.08993 * 109.47025 * 185.12368 * 8 7 6 41 41 H 1.08993 * 109.47165 * 305.12849 * 8 7 6 42 42 H 0.97005 * 119.99797 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.46774 * 70.00267 * 17 7 6 44 44 H 1.09003 * 109.47659 * 310.00438 * 17 7 6 45 45 H 1.08001 * 119.92695 * 359.97367 * 19 18 17 46 46 H 1.08001 * 120.07777 * 179.72062 * 20 19 18 47 47 H 1.09003 * 109.46979 * 90.00570 * 25 24 21 48 48 H 1.08998 * 109.47151 * 209.99765 * 25 24 21 49 49 H 1.08994 * 109.47464 * 330.00453 * 25 24 21 50 50 H 1.08002 * 119.91921 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6354 2.1266 1.3073 5 6 2.0185 3.6065 1.2484 6 6 3.5649 1.4443 -0.1258 7 7 3.9489 0.8997 -1.4350 8 6 5.3510 0.4616 -1.4322 9 6 5.5141 -0.6946 -0.4795 10 1 4.6492 -1.1161 0.0112 11 6 6.7674 -1.2142 -0.2342 12 7 7.8206 -0.7011 -0.8320 13 14 6.9695 -2.6479 0.9462 14 1 6.8587 -3.9253 0.1971 15 1 8.3021 -2.5694 1.5966 16 1 5.9082 -2.5885 1.9833 17 6 3.7050 1.8775 -2.5039 18 6 3.8745 1.2096 -3.8441 19 6 5.1175 1.1910 -4.4520 20 6 5.2786 0.5860 -5.6810 21 6 4.1862 -0.0189 -6.3065 22 6 4.3475 -0.6544 -7.5795 23 7 4.4755 -1.1587 -8.5894 24 6 2.9363 -0.0015 -5.6846 25 6 1.7519 -0.6521 -6.3517 26 6 2.7880 0.6127 -4.4582 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6054 1.9815 -0.8418 33 1 0.5581 2.0354 1.4467 34 1 2.1512 1.6506 2.1413 35 1 1.7896 4.0795 2.2034 36 1 3.0854 3.6979 1.0444 37 1 1.4537 4.0968 0.4555 38 1 3.9953 0.8287 0.6641 39 1 3.9358 2.4651 -0.0338 40 1 5.6355 0.1478 -2.4365 41 1 5.9888 1.2866 -1.1150 42 1 8.7024 -1.0665 -0.6591 43 1 4.4164 2.6985 -2.4145 44 1 2.6900 2.2653 -2.4170 45 1 5.9624 1.6552 -3.9652 46 1 6.2483 0.5761 -6.1565 47 1 1.6881 -1.6952 -6.0418 48 1 0.8398 -0.1305 -6.0617 49 1 1.8711 -0.6012 -7.4339 50 1 1.8216 0.6272 -3.9763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488441944.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:04 Heat of formation + Delta-G solvation = 27.263936 kcal Electronic energy + Delta-G solvation = -26583.187379 eV Core-core repulsion = 23188.313148 eV Total energy + Delta-G solvation = -3394.874232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.68547 -37.96766 -36.40724 -35.22429 -32.91999 -32.43600 -31.49486 -31.34182 -28.05646 -27.40978 -27.04210 -25.10567 -23.38595 -22.50536 -22.23763 -21.28476 -20.27726 -19.10640 -18.44714 -16.47676 -15.67638 -15.50266 -14.94488 -14.66411 -14.35200 -14.27369 -14.22778 -14.10792 -13.61123 -13.47976 -13.27416 -13.08880 -13.03974 -12.82174 -12.54148 -12.49536 -12.31979 -12.08691 -11.90975 -11.69275 -11.59422 -11.48644 -11.28616 -11.02290 -10.90997 -10.80584 -10.72466 -10.66677 -10.61968 -10.06915 -9.99748 -9.91834 -9.66057 -9.19751 -8.63293 -8.48436 -8.35951 -7.25963 -6.04491 -4.04322 0.96523 1.56726 2.77217 3.10580 3.30672 3.37467 3.39902 3.98780 4.07175 4.41994 4.82436 4.87499 4.91594 5.12708 5.14735 5.21115 5.31996 5.37934 5.42180 5.52206 5.53094 5.58757 5.62067 5.65361 5.70952 5.77296 5.84321 5.92323 5.93269 6.01176 6.07122 6.09122 6.15494 6.19660 6.24725 6.27294 6.38912 6.46909 6.51331 6.53250 6.58109 6.66133 6.84715 6.91469 6.96699 7.05394 7.29169 7.33067 7.59285 7.79314 8.06742 8.16300 8.51912 9.03423 9.59639 11.06253 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008184 B = 0.005045 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3420.418931 B = 5548.909336 C = 7628.990792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.080 4.080 4 C -0.121 4.121 5 C -0.154 4.154 6 C 0.065 3.935 7 N -0.526 5.526 8 C 0.186 3.814 9 C -0.503 4.503 10 H 0.063 0.937 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.274 1.274 17 C 0.083 3.917 18 C -0.022 4.022 19 C -0.107 4.107 20 C -0.065 4.065 21 C -0.050 4.050 22 C 0.268 3.732 23 N -0.439 5.439 24 C -0.041 4.041 25 C -0.119 4.119 26 C -0.104 4.104 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.023 0.977 40 H 0.038 0.962 41 H -0.009 1.009 42 H 0.260 0.740 43 H 0.035 0.965 44 H 0.074 0.926 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.677 7.222 -2.384 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.099 4.099 4 C -0.159 4.159 5 C -0.211 4.211 6 C -0.063 4.063 7 N -0.250 5.250 8 C 0.061 3.939 9 C -0.542 4.542 10 H 0.082 0.918 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.044 4.044 18 C -0.023 4.023 19 C -0.125 4.125 20 C -0.086 4.086 21 C -0.053 4.053 22 C -0.046 4.046 23 N -0.115 5.115 24 C -0.044 4.044 25 C -0.175 4.175 26 C -0.122 4.122 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.009 0.991 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.564 6.007 -4.046 14.502 hybrid contribution 0.916 0.007 1.255 1.554 sum -11.647 6.013 -2.791 13.402 Atomic orbital electron populations 1.21854 0.97434 1.00706 1.00855 1.21442 0.93679 0.96505 1.03266 1.21189 0.96274 0.96032 0.96369 1.21614 1.00633 0.95299 0.98384 1.21835 1.01921 0.96574 1.00757 1.22126 0.93680 0.97492 0.93031 1.62127 1.26409 1.34983 1.01491 1.19871 0.80933 0.94872 0.98186 1.21132 0.92700 1.15230 1.25145 0.91844 1.24941 0.95962 0.97136 0.96373 1.69942 0.98661 1.41787 1.43355 0.86593 0.77285 0.82927 0.81182 1.20720 1.21425 1.19866 1.21130 1.00702 0.93408 0.89202 1.20078 0.92769 0.94607 0.94875 1.21080 0.97425 0.99850 0.94189 1.21071 0.97154 0.95448 0.94885 1.15845 0.95213 1.04581 0.89707 1.25768 0.93026 0.93021 0.92792 1.81199 1.08172 1.10150 1.11929 1.19795 0.93128 0.96822 0.94640 1.20856 0.95685 1.01059 0.99936 1.20745 0.99412 0.98329 0.93759 0.93368 0.93392 0.93510 0.90076 0.92618 0.92107 0.92234 0.92109 0.93461 0.92287 0.93252 0.89402 0.95926 0.94382 0.99075 0.93018 0.94724 0.90815 0.84895 0.85364 0.90528 0.90764 0.92013 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.68 37.16 0.36 -1.38 16 2 C -0.11 -1.57 5.35 -26.73 -0.14 -1.72 16 3 C -0.08 -1.08 1.90 -90.62 -0.17 -1.26 16 4 C -0.12 -1.46 5.27 -26.74 -0.14 -1.60 16 5 C -0.15 -1.71 9.77 37.15 0.36 -1.34 16 6 C 0.06 1.10 4.10 -3.83 -0.02 1.08 16 7 N -0.53 -9.69 3.81 -237.52 -0.90 -10.60 16 8 C 0.19 4.35 4.47 -4.98 -0.02 4.33 16 9 C -0.50 -13.15 8.12 -34.44 -0.28 -13.43 16 10 H 0.06 1.65 7.43 -52.48 -0.39 1.26 16 11 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 12 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 13 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 C 0.08 1.27 4.94 -4.97 -0.02 1.25 16 18 C -0.02 -0.33 4.92 -104.53 -0.51 -0.84 16 19 C -0.11 -1.62 7.82 -39.64 -0.31 -1.93 16 20 C -0.07 -0.91 9.76 -39.17 -0.38 -1.29 16 21 C -0.05 -0.69 5.73 -106.93 -0.61 -1.30 16 22 C 0.27 3.92 13.80 -22.47 -0.31 3.61 16 23 N -0.44 -7.06 18.54 41.84 0.78 -6.28 16 24 C -0.04 -0.53 5.91 -104.21 -0.62 -1.14 16 25 C -0.12 -1.24 9.61 36.01 0.35 -0.89 16 26 C -0.10 -1.37 9.34 -39.65 -0.37 -1.74 16 27 H 0.05 0.51 6.45 -51.93 -0.33 0.18 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.32 7.63 -51.93 -0.40 0.92 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.79 6.63 -51.93 -0.34 0.45 16 33 H 0.06 0.65 6.31 -51.93 -0.33 0.32 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.72 6.33 -51.93 -0.33 0.39 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.74 6.59 -51.93 -0.34 1.40 16 39 H 0.02 0.38 6.16 -51.93 -0.32 0.06 16 40 H 0.04 0.94 5.51 -51.93 -0.29 0.65 16 41 H -0.01 -0.22 8.13 -51.93 -0.42 -0.64 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 44 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 45 H 0.13 2.07 7.86 -52.49 -0.41 1.66 16 46 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 49 H 0.06 0.65 7.09 -51.93 -0.37 0.28 16 50 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -28.26 398.59 -9.74 -38.00 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.39 Total: -0.25 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -2.94 Total: -18.15 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.61 Total: -41.64 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.26 -9.74 -38.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488441944.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.265 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds