Wall clock time and date at job start Tue Mar 31 2020 11:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47231 * 2 1 4 4 C 1.53000 * 109.47542 * 65.00075 * 3 2 1 5 5 C 1.52987 * 109.47553 * 185.75501 * 4 3 2 6 6 C 1.52998 * 109.47137 * 185.00381 * 3 2 1 7 7 N 1.46900 * 109.47513 * 65.15622 * 6 3 2 8 8 C 1.46896 * 111.00235 * 199.18780 * 7 6 3 9 9 C 1.50705 * 109.46886 * 65.12905 * 8 7 6 10 10 H 1.08003 * 119.99897 * 4.72004 * 9 8 7 11 11 C 1.37870 * 119.99788 * 184.72839 * 9 8 7 12 12 N 1.31520 * 120.00360 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99861 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47241 * 89.99578 * 13 11 9 15 15 H 1.48500 * 109.46811 * 209.99690 * 13 11 9 16 16 H 1.48504 * 109.46871 * 329.99416 * 13 11 9 17 17 C 1.46901 * 110.99672 * 75.23434 * 7 6 3 18 18 C 1.50702 * 109.47370 * 190.00062 * 17 7 6 19 19 C 1.38385 * 119.84747 * 270.30460 * 18 17 7 20 20 C 1.37924 * 120.15128 * 180.25546 * 19 18 17 21 21 C 1.39656 * 119.84486 * 359.44268 * 20 19 18 22 22 C 1.43199 * 120.15088 * 180.29881 * 21 20 19 23 23 N 9.15403 * 108.76972 * 262.31744 * 2 1 3 24 24 C 1.39617 * 119.69666 * 0.27666 * 21 20 19 25 25 C 1.50700 * 120.07274 * 180.02562 * 24 21 20 26 26 C 1.37965 * 119.84650 * 0.02562 * 24 21 20 27 27 H 1.09006 * 109.46852 * 299.99920 * 1 2 3 28 28 H 1.09000 * 109.47027 * 59.99807 * 1 2 3 29 29 H 1.08997 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46417 * 239.99969 * 2 1 3 31 31 H 1.09000 * 109.47027 * 120.00192 * 2 1 3 32 32 H 1.09006 * 109.47189 * 305.00155 * 3 2 1 33 33 H 1.09007 * 109.46701 * 305.75459 * 4 3 2 34 34 H 1.08997 * 109.47014 * 65.74827 * 4 3 2 35 35 H 1.08999 * 109.47525 * 183.65088 * 5 4 3 36 36 H 1.09005 * 109.47434 * 303.64692 * 5 4 3 37 37 H 1.09000 * 109.47366 * 63.64859 * 5 4 3 38 38 H 1.08999 * 109.47127 * 305.15882 * 6 3 2 39 39 H 1.09002 * 109.47218 * 185.16105 * 6 3 2 40 40 H 1.08993 * 109.47025 * 185.12368 * 8 7 6 41 41 H 1.08993 * 109.47165 * 305.12849 * 8 7 6 42 42 H 0.97005 * 119.99797 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.46774 * 70.00267 * 17 7 6 44 44 H 1.09003 * 109.47659 * 310.00438 * 17 7 6 45 45 H 1.08001 * 119.92695 * 359.97367 * 19 18 17 46 46 H 1.08001 * 120.07777 * 179.72062 * 20 19 18 47 47 H 1.09003 * 109.46979 * 90.00570 * 25 24 21 48 48 H 1.08998 * 109.47151 * 209.99765 * 25 24 21 49 49 H 1.08994 * 109.47464 * 330.00453 * 25 24 21 50 50 H 1.08002 * 119.91921 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6354 2.1266 1.3073 5 6 2.0185 3.6065 1.2484 6 6 3.5649 1.4443 -0.1258 7 7 3.9489 0.8997 -1.4350 8 6 5.3510 0.4616 -1.4322 9 6 5.5141 -0.6946 -0.4795 10 1 4.6492 -1.1161 0.0112 11 6 6.7674 -1.2142 -0.2342 12 7 7.8206 -0.7011 -0.8320 13 14 6.9695 -2.6479 0.9462 14 1 6.8587 -3.9253 0.1971 15 1 8.3021 -2.5694 1.5966 16 1 5.9082 -2.5885 1.9833 17 6 3.7050 1.8775 -2.5039 18 6 3.8745 1.2096 -3.8441 19 6 5.1175 1.1910 -4.4520 20 6 5.2786 0.5860 -5.6810 21 6 4.1862 -0.0189 -6.3065 22 6 4.3475 -0.6544 -7.5795 23 7 4.4755 -1.1587 -8.5894 24 6 2.9363 -0.0015 -5.6846 25 6 1.7519 -0.6521 -6.3517 26 6 2.7880 0.6127 -4.4582 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6054 1.9815 -0.8418 33 1 0.5581 2.0354 1.4467 34 1 2.1512 1.6506 2.1413 35 1 1.7896 4.0795 2.2034 36 1 3.0854 3.6979 1.0444 37 1 1.4537 4.0968 0.4555 38 1 3.9953 0.8287 0.6641 39 1 3.9358 2.4651 -0.0338 40 1 5.6355 0.1478 -2.4365 41 1 5.9888 1.2866 -1.1150 42 1 8.7024 -1.0665 -0.6591 43 1 4.4164 2.6985 -2.4145 44 1 2.6900 2.2653 -2.4170 45 1 5.9624 1.6552 -3.9652 46 1 6.2483 0.5761 -6.1565 47 1 1.6881 -1.6952 -6.0418 48 1 0.8398 -0.1305 -6.0617 49 1 1.8711 -0.6012 -7.4339 50 1 1.8216 0.6272 -3.9763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488441944.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:03 Heat of formation + Delta-G solvation = 15.134362 kcal Electronic energy + Delta-G solvation = -26583.713357 eV Core-core repulsion = 23188.313148 eV Total energy + Delta-G solvation = -3395.400210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83300 -39.24499 -37.59924 -36.53111 -34.67365 -33.69896 -32.61793 -32.43665 -29.63567 -28.74331 -28.03533 -26.48305 -24.89508 -23.74067 -23.26049 -22.48918 -21.66643 -20.30757 -19.58737 -18.42526 -17.00422 -16.75659 -16.41087 -16.17632 -15.60409 -15.37737 -15.31760 -15.27617 -14.90710 -14.66759 -14.48553 -14.19427 -14.05985 -14.02511 -13.94842 -13.70091 -13.57884 -13.36685 -13.17744 -12.94885 -12.67899 -12.66110 -12.59650 -12.50047 -12.42520 -12.21385 -11.94278 -11.92614 -11.85613 -11.65928 -11.29553 -11.14775 -11.00195 -10.88581 -10.51345 -9.73615 -9.55354 -8.82050 -8.13369 -6.19165 -0.17643 0.47473 1.41093 1.42350 1.51813 1.59232 1.93070 2.43489 2.83775 2.92383 3.20689 3.53415 3.81119 3.87410 3.97968 4.03859 4.16528 4.31846 4.38997 4.42576 4.51944 4.57030 4.62851 4.72144 4.73207 4.77002 4.80286 4.82285 4.86210 4.94916 5.01727 5.07522 5.09730 5.16721 5.24175 5.25419 5.28849 5.33905 5.34730 5.42673 5.46535 5.50114 5.54249 5.58803 5.69274 5.74511 5.76470 5.84285 5.95370 6.18695 6.42296 6.47266 6.76422 6.98400 7.48982 8.96862 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.008184 B = 0.005045 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3420.418931 B = 5548.909336 C = 7628.990792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.068 4.068 4 C -0.118 4.118 5 C -0.152 4.152 6 C 0.068 3.932 7 N -0.525 5.525 8 C 0.203 3.797 9 C -0.509 4.509 10 H 0.060 0.940 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.951 3.049 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.265 1.265 17 C 0.086 3.914 18 C -0.034 4.034 19 C -0.125 4.125 20 C -0.068 4.068 21 C -0.057 4.057 22 C 0.285 3.715 23 N -0.465 5.465 24 C -0.034 4.034 25 C -0.118 4.118 26 C -0.100 4.100 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.024 0.976 41 H -0.043 1.043 42 H 0.260 0.740 43 H 0.028 0.972 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.137 0.863 47 H 0.080 0.920 48 H 0.100 0.900 49 H 0.059 0.941 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.738 7.348 -2.189 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.087 4.087 4 C -0.156 4.156 5 C -0.209 4.209 6 C -0.060 4.060 7 N -0.248 5.248 8 C 0.077 3.923 9 C -0.547 4.547 10 H 0.078 0.922 11 C -0.192 4.192 12 N -0.573 5.573 13 Si 0.777 3.223 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.190 1.190 17 C -0.042 4.042 18 C -0.036 4.036 19 C -0.144 4.144 20 C -0.088 4.088 21 C -0.061 4.061 22 C -0.029 4.029 23 N -0.141 5.141 24 C -0.037 4.037 25 C -0.174 4.174 26 C -0.118 4.118 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.042 0.958 41 H -0.025 1.025 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.155 0.845 47 H 0.099 0.901 48 H 0.119 0.881 49 H 0.078 0.922 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.648 6.139 -3.847 17.244 hybrid contribution 1.855 0.010 1.186 2.202 sum -13.793 6.150 -2.661 15.334 Atomic orbital electron populations 1.21781 0.94790 1.01383 1.02114 1.21377 0.95929 0.96175 1.01212 1.21106 0.93183 0.96319 0.98082 1.21594 1.01690 0.95565 0.96738 1.21813 1.00990 0.96067 1.02017 1.22109 0.96294 0.96444 0.91177 1.62053 1.22812 1.36823 1.03138 1.19489 0.83363 0.92993 0.96459 1.21452 0.92516 1.15654 1.25113 0.92213 1.25709 0.95858 0.99625 0.98020 1.70063 0.98999 1.43285 1.44938 0.85650 0.77326 0.79879 0.79403 1.20436 1.21241 1.18952 1.21205 1.02158 0.92476 0.88334 1.20139 0.93249 0.95390 0.94785 1.21044 0.97469 1.00936 0.94918 1.21161 0.97896 0.95175 0.94578 1.15939 0.95777 1.04843 0.89536 1.25778 0.92214 0.92344 0.92544 1.81214 1.09044 1.11139 1.12713 1.20103 0.93456 0.95782 0.94336 1.20926 0.95565 1.01330 0.99567 1.20970 0.99787 0.97355 0.93683 0.92172 0.91975 0.93236 0.92345 0.94558 0.90399 0.90150 0.93413 0.92226 0.93987 0.91858 0.92963 0.95882 0.95762 1.02519 0.93119 0.95353 0.87744 0.86493 0.84486 0.90095 0.88088 0.92186 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.68 71.98 0.70 -2.14 16 2 C -0.11 -2.93 5.35 30.59 0.16 -2.76 16 3 C -0.07 -1.73 1.90 -10.80 -0.02 -1.76 16 4 C -0.12 -2.58 5.27 30.59 0.16 -2.42 16 5 C -0.15 -3.03 9.77 71.98 0.70 -2.33 16 6 C 0.07 2.31 4.10 86.30 0.35 2.67 16 7 N -0.52 -19.55 3.81 -905.37 -3.45 -22.99 16 8 C 0.20 9.89 4.47 85.56 0.38 10.28 16 9 C -0.51 -27.38 8.12 25.60 0.21 -27.18 16 10 H 0.06 3.19 7.43 -2.91 -0.02 3.17 16 11 C 0.01 0.31 5.46 84.65 0.46 0.77 16 12 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 13 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 C 0.09 2.55 4.94 85.56 0.42 2.97 16 18 C -0.03 -1.00 4.92 -19.81 -0.10 -1.09 16 19 C -0.12 -3.89 7.82 22.23 0.17 -3.71 16 20 C -0.07 -1.91 9.76 22.54 0.22 -1.69 16 21 C -0.06 -1.53 5.73 -21.36 -0.12 -1.66 16 22 C 0.29 8.09 13.80 88.33 1.22 9.31 16 23 N -0.46 -14.65 18.54 19.00 0.35 -14.30 16 24 C -0.03 -0.80 5.91 -19.60 -0.12 -0.92 16 25 C -0.12 -2.09 9.61 71.24 0.68 -1.41 16 26 C -0.10 -2.40 9.34 22.23 0.21 -2.19 16 27 H 0.06 1.05 6.45 -2.38 -0.02 1.04 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.83 7.63 -2.39 -0.02 1.81 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.75 6.63 -2.38 -0.02 1.74 16 33 H 0.08 1.46 6.31 -2.38 -0.02 1.45 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.04 0.97 6.33 -2.38 -0.02 0.96 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 2.15 6.59 -2.39 -0.02 2.14 16 39 H 0.02 0.78 6.16 -2.39 -0.01 0.77 16 40 H 0.02 1.25 5.51 -2.39 -0.01 1.24 16 41 H -0.04 -2.35 8.13 -2.39 -0.02 -2.37 16 42 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 43 H 0.03 0.89 8.06 -2.38 -0.02 0.87 16 44 H 0.10 2.46 6.47 -2.39 -0.02 2.45 16 45 H 0.12 3.93 7.86 -2.91 -0.02 3.91 16 46 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.10 1.28 8.09 -2.39 -0.02 1.26 16 49 H 0.06 1.11 7.09 -2.39 -0.02 1.09 16 50 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -62.74 398.59 5.83 -56.92 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.91 Total: 14.07 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 5.70 Total: -25.25 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -2.81 Total: -91.64 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -62.74 5.83 -56.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488441944.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.052 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds