Wall clock time and date at job start Tue Mar 31 2020 10:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99935 * 2 1 4 4 C 1.34780 * 119.99986 * 179.97438 * 2 1 3 5 5 O 1.21511 * 119.99881 * 0.02562 * 4 2 1 6 6 O 1.34638 * 119.99671 * 180.02562 * 4 2 1 7 7 C 1.45202 * 116.99652 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46862 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.45952 * 184.97776 * 8 7 6 10 10 C 1.53031 * 109.45602 * 304.94954 * 8 7 6 11 11 C 1.53117 * 109.28042 * 179.19140 * 10 8 7 12 12 C 1.53125 * 109.15978 * 302.34650 * 11 10 8 13 13 C 1.53037 * 109.27608 * 57.65388 * 12 11 10 14 14 N 1.46850 * 109.52462 * 300.81733 * 13 12 11 15 15 C 1.46902 * 110.99822 * 185.83934 * 14 13 12 16 16 C 1.53000 * 109.47042 * 51.71783 * 15 14 13 17 17 O 1.42898 * 109.47048 * 62.35901 * 16 15 14 18 18 C 1.42908 * 113.99640 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.46771 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00513 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99899 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99664 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00208 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47223 * 59.99297 * 23 21 19 25 25 H 1.48494 * 109.47193 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46895 * 299.99778 * 23 21 19 27 27 H 1.09001 * 109.47155 * 239.99974 * 1 2 3 28 28 H 1.09002 * 109.47063 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46375 * 120.00342 * 1 2 3 30 30 H 1.08999 * 109.46836 * 269.99379 * 3 2 1 31 31 H 1.09004 * 109.47003 * 29.99628 * 3 2 1 32 32 H 1.08999 * 109.46953 * 149.99229 * 3 2 1 33 33 H 1.09005 * 109.47173 * 59.99588 * 7 6 4 34 34 H 1.09003 * 109.46858 * 299.99731 * 7 6 4 35 35 H 1.09002 * 109.50428 * 299.13320 * 10 8 7 36 36 H 1.08999 * 109.50226 * 59.24959 * 10 8 7 37 37 H 1.08996 * 109.52236 * 62.24570 * 11 10 8 38 38 H 1.08999 * 109.52837 * 182.44230 * 11 10 8 39 39 H 1.08996 * 109.50227 * 177.59091 * 12 11 10 40 40 H 1.08998 * 109.49966 * 297.71532 * 12 11 10 41 41 H 1.08999 * 109.46036 * 180.80703 * 13 12 11 42 42 H 1.08999 * 109.46400 * 60.83404 * 13 12 11 43 43 H 1.09001 * 109.47171 * 291.71260 * 15 14 13 44 44 H 1.09003 * 109.46704 * 171.71335 * 15 14 13 45 45 H 1.08999 * 109.46633 * 302.35584 * 16 15 14 46 46 H 1.09005 * 109.46783 * 182.35606 * 16 15 14 47 47 H 1.08998 * 109.46958 * 299.99714 * 18 17 16 48 48 H 1.09003 * 109.46879 * 59.99526 * 18 17 16 49 49 H 0.97003 * 119.99586 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5314 -2.2195 0.0005 6 8 3.4853 -1.1672 0.0010 7 6 4.1445 -2.4609 0.0010 8 6 5.6613 -2.2604 0.0010 9 1 6.1555 -3.2279 -0.0882 10 6 6.0583 -1.3741 -1.1817 11 6 7.5743 -1.1595 -1.1662 12 6 7.9794 -0.5320 0.1705 13 6 7.5267 -1.4428 1.3140 14 7 6.0697 -1.6162 1.2559 15 6 5.5827 -2.3713 2.4181 16 6 6.1117 -1.7287 3.7019 17 8 5.6060 -0.3966 3.8112 18 6 6.0429 0.2967 4.9819 19 6 5.4532 1.6834 4.9939 20 1 4.8095 2.0035 4.1879 21 6 5.7363 2.5440 6.0333 22 7 6.5205 2.1543 7.0145 23 14 5.0059 4.2632 6.0478 24 1 3.5238 4.1714 6.0515 25 1 5.4598 4.9836 7.2644 26 1 5.4531 5.0012 4.8392 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5139 -0.8900 30 1 2.3793 1.5833 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5140 33 1 3.8519 -3.0178 -0.8892 34 1 3.8513 -3.0181 0.8908 35 1 5.7690 -1.8598 -2.1137 36 1 5.5536 -0.4114 -1.1005 37 1 8.0791 -2.1180 -1.2864 38 1 7.8563 -0.4934 -1.9816 39 1 9.0626 -0.4161 0.2046 40 1 7.5049 0.4439 0.2729 41 1 7.8010 -0.9919 2.2677 42 1 8.0121 -2.4140 1.2186 43 1 5.9342 -3.4011 2.3556 44 1 4.4927 -2.3594 2.4283 45 1 7.2010 -1.7026 3.6729 46 1 5.7849 -2.3131 4.5620 47 1 5.7151 -0.2456 5.8688 48 1 7.1308 0.3647 4.9791 49 1 6.7199 2.7599 7.7456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495598089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:19 Heat of formation + Delta-G solvation = -118.745938 kcal Electronic energy + Delta-G solvation = -28200.134820 eV Core-core repulsion = 24355.787110 eV Total energy + Delta-G solvation = -3844.347709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47159 -39.25894 -36.81911 -36.40020 -35.41975 -33.70910 -32.57854 -31.87468 -28.80985 -28.20035 -27.06645 -26.65120 -25.60641 -24.20308 -22.26580 -21.66433 -20.87833 -20.71374 -19.34760 -17.89699 -16.98115 -16.70862 -16.34546 -16.02688 -15.57592 -15.23615 -14.74461 -14.55308 -14.34359 -14.24993 -14.09481 -13.93518 -13.49840 -13.20223 -12.90954 -12.79609 -12.64471 -12.53013 -12.36951 -12.16955 -11.98509 -11.73554 -11.70762 -11.20614 -11.10092 -10.83278 -10.75901 -10.73871 -10.63166 -10.50440 -10.41287 -10.14129 -10.04356 -9.84430 -9.05741 -8.79719 -8.74582 -8.10212 -7.99264 -6.06837 -4.07506 2.23614 2.92933 3.33740 3.36407 3.40077 3.88171 3.99091 4.37992 4.65639 4.72713 4.86909 5.01224 5.04641 5.19727 5.23196 5.25007 5.28884 5.29638 5.31072 5.32309 5.43228 5.58050 5.58383 5.60322 5.65084 5.69104 5.79038 5.85161 5.93058 5.93649 6.01535 6.06686 6.09843 6.28147 6.31333 6.36222 6.37299 6.43033 6.52298 7.14714 7.30848 7.32118 7.34281 7.47988 7.84660 8.21515 8.37873 8.66604 9.06821 9.56948 11.04882 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.009314 B = 0.004676 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.363911 B = 5986.446774 C = 7727.303254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.603 5.603 3 C 0.082 3.918 4 C 0.648 3.352 5 O -0.583 6.583 6 O -0.339 6.339 7 C 0.093 3.907 8 C 0.086 3.914 9 H 0.057 0.943 10 C -0.108 4.108 11 C -0.119 4.119 12 C -0.116 4.116 13 C 0.054 3.946 14 N -0.510 5.510 15 C 0.057 3.943 16 C 0.063 3.937 17 O -0.376 6.376 18 C 0.194 3.806 19 C -0.508 4.508 20 H 0.066 0.934 21 C 0.055 3.945 22 N -0.901 5.901 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.024 0.976 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -7.216 -17.540 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.344 5.344 3 C -0.061 4.061 4 C 0.402 3.598 5 O -0.474 6.474 6 O -0.251 6.251 7 C 0.018 3.982 8 C -0.023 4.023 9 H 0.075 0.925 10 C -0.146 4.146 11 C -0.157 4.157 12 C -0.154 4.154 13 C -0.074 4.074 14 N -0.235 5.235 15 C -0.071 4.071 16 C -0.015 4.015 17 O -0.295 6.295 18 C 0.120 3.880 19 C -0.546 4.546 20 H 0.084 0.916 21 C -0.145 4.145 22 N -0.540 5.540 23 Si 0.734 3.266 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.200 1.200 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.042 0.958 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.019 0.981 48 H 0.020 0.980 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.431 -6.951 -17.482 19.124 hybrid contribution 0.207 -0.131 0.476 0.535 sum -3.223 -7.081 -17.007 18.702 Atomic orbital electron populations 1.21597 0.76804 1.02596 1.02423 1.46455 1.06659 1.04621 1.76659 1.21885 0.98410 0.83981 1.01816 1.18096 0.81522 0.83977 0.76166 1.90957 1.69298 1.30566 1.56540 1.86375 1.17774 1.34845 1.86116 1.23082 0.90936 0.81855 1.02325 1.21787 0.91949 0.96531 0.91994 0.92514 1.21547 0.96163 1.01267 0.95648 1.21580 0.95770 1.00397 0.97912 1.21572 1.00090 1.00227 0.93509 1.22179 0.86942 0.97767 1.00497 1.61814 1.12254 1.49392 1.00051 1.22227 1.01248 0.93590 0.89987 1.22319 0.96970 0.87351 0.94897 1.87985 1.72186 1.23076 1.46244 1.20164 0.94168 0.91619 0.82055 1.21001 1.29602 0.96793 1.07234 0.91607 1.24938 0.95371 0.99042 0.95178 1.69959 1.36731 1.36565 1.10761 0.86426 0.79467 0.83390 0.77356 1.20094 1.21250 1.20020 0.91885 0.90034 0.92173 0.92807 0.90875 0.89134 0.91209 0.90920 0.92045 0.89903 0.92728 0.91932 0.91874 0.90470 0.89321 0.95812 0.94603 0.90082 0.94353 0.94373 0.98140 0.98042 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.10 10.16 59.85 0.61 1.71 16 2 N -0.60 -7.97 3.27 -195.39 -0.64 -8.61 16 3 C 0.08 0.93 10.41 59.85 0.62 1.55 16 4 C 0.65 10.29 8.40 54.06 0.45 10.74 16 5 O -0.58 -10.51 16.13 -19.28 -0.31 -10.82 16 6 O -0.34 -5.17 8.11 -40.32 -0.33 -5.49 16 7 C 0.09 1.23 4.71 37.16 0.18 1.41 16 8 C 0.09 1.06 2.24 -67.72 -0.15 0.91 16 9 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 10 C -0.11 -1.21 5.19 -26.65 -0.14 -1.35 16 11 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 12 C -0.12 -1.45 6.09 -26.65 -0.16 -1.61 16 13 C 0.05 0.75 5.03 -3.83 -0.02 0.74 16 14 N -0.51 -7.68 4.46 -226.68 -1.01 -8.69 16 15 C 0.06 0.89 4.85 -3.82 -0.02 0.87 16 16 C 0.06 1.18 5.55 37.16 0.21 1.38 16 17 O -0.38 -9.14 10.23 -35.23 -0.36 -9.50 16 18 C 0.19 5.37 5.69 36.00 0.20 5.57 16 19 C -0.51 -14.99 9.43 -34.44 -0.32 -15.32 16 20 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 23 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 32 H 0.09 1.25 7.37 -51.93 -0.38 0.87 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.01 6.12 -51.93 -0.32 0.70 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.46 5.79 -51.93 -0.30 1.16 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 1.36 6.35 -51.93 -0.33 1.03 16 45 H 0.04 0.69 6.04 -51.93 -0.31 0.38 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 48 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -34.15 388.74 -8.61 -42.77 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.74 Total: -2.74 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 1.20 Total: 6.72 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.91 Total: -43.63 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.00 Total: -25.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.15 -8.61 -42.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495598089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.980 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds