Wall clock time and date at job start Tue Mar 31 2020 10:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99510 * 2 1 4 4 C 1.34772 * 120.00070 * 180.02562 * 2 1 3 5 5 O 1.21508 * 120.00369 * 359.97438 * 4 2 1 6 6 O 1.34637 * 119.99692 * 179.97438 * 4 2 1 7 7 C 1.45209 * 116.99786 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46887 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.45104 * 175.02886 * 8 7 6 10 10 C 1.53029 * 109.46443 * 55.05390 * 8 7 6 11 11 C 1.53115 * 109.28077 * 180.80156 * 10 8 7 12 12 C 1.53124 * 109.16019 * 57.65781 * 11 10 8 13 13 C 1.53036 * 109.27394 * 302.34493 * 12 11 10 14 14 N 1.46846 * 109.46350 * 294.99928 * 8 7 6 15 15 C 1.46902 * 111.00251 * 305.86113 * 14 8 7 16 16 C 1.52998 * 109.46748 * 301.83207 * 15 14 8 17 17 O 1.42906 * 109.47212 * 65.00172 * 16 15 14 18 18 C 1.42894 * 114.00137 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47263 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99758 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.09000 * 109.46779 * 239.99542 * 1 2 3 28 28 H 1.08993 * 109.47573 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47057 * 120.00141 * 1 2 3 30 30 H 1.09000 * 109.46933 * 270.00261 * 3 2 1 31 31 H 1.08994 * 109.47092 * 30.00191 * 3 2 1 32 32 H 1.08999 * 109.46731 * 150.00520 * 3 2 1 33 33 H 1.09004 * 109.46668 * 60.00072 * 7 6 4 34 34 H 1.08996 * 109.46997 * 299.99934 * 7 6 4 35 35 H 1.09002 * 109.50284 * 60.86079 * 10 8 7 36 36 H 1.09002 * 109.53666 * 300.76535 * 10 8 7 37 37 H 1.08996 * 109.52494 * 297.75374 * 11 10 8 38 38 H 1.09003 * 109.52433 * 177.55623 * 11 10 8 39 39 H 1.09001 * 109.50464 * 182.40384 * 12 11 10 40 40 H 1.08999 * 109.53670 * 62.30124 * 12 11 10 41 41 H 1.08999 * 109.46567 * 299.15973 * 13 12 11 42 42 H 1.08998 * 109.45196 * 179.18645 * 13 12 11 43 43 H 1.08996 * 109.47044 * 181.83571 * 15 14 8 44 44 H 1.08994 * 109.47663 * 61.83221 * 15 14 8 45 45 H 1.09001 * 109.47860 * 305.00477 * 16 15 14 46 46 H 1.09006 * 109.47541 * 184.99917 * 16 15 14 47 47 H 1.09001 * 109.47678 * 60.00187 * 18 17 16 48 48 H 1.09006 * 109.47375 * 299.99854 * 18 17 16 49 49 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5314 -2.2195 -0.0005 6 8 3.4853 -1.1671 -0.0010 7 6 4.1445 -2.4609 -0.0010 8 6 5.6614 -2.2603 -0.0010 9 1 6.1554 -3.2278 0.0881 10 6 6.0585 -1.3741 1.1817 11 6 7.5745 -1.1597 1.1661 12 6 7.9797 -0.5321 -0.1706 13 6 7.5268 -1.4428 -1.3141 14 7 6.0698 -1.6161 -1.2558 15 6 5.5824 -2.3709 -2.4181 16 6 6.1218 -3.8015 -2.3596 17 8 5.5775 -4.4696 -1.2196 18 6 6.0195 -5.8204 -1.0716 19 6 5.3873 -6.4242 0.1560 20 1 4.7148 -5.8353 0.7622 21 6 5.6666 -7.7285 0.5046 22 7 6.4851 -8.4457 -0.2339 23 14 4.8834 -8.4766 2.0266 24 1 5.3417 -9.8808 2.1797 25 1 5.2801 -7.6926 3.2237 26 1 3.4053 -8.4515 1.8859 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3790 1.5835 -1.0277 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 3.8513 -3.0180 -0.8908 34 1 3.8520 -3.0176 0.8892 35 1 5.7692 -1.8598 2.1136 36 1 5.5540 -0.4112 1.1013 37 1 8.0792 -2.1183 1.2863 38 1 7.8566 -0.4936 1.9815 39 1 9.0630 -0.4163 -0.2048 40 1 7.5058 0.4441 -0.2734 41 1 8.0122 -2.4141 -1.2189 42 1 7.8010 -0.9917 -2.2677 43 1 5.9264 -1.8901 -3.3338 44 1 4.4928 -2.3927 -2.4064 45 1 7.2087 -3.7772 -2.2817 46 1 5.8343 -4.3356 -3.2653 47 1 7.1044 -5.8384 -0.9672 48 1 5.7295 -6.3961 -1.9506 49 1 6.8920 -8.0571 -1.0240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495598090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:22 Heat of formation + Delta-G solvation = -122.354833 kcal Electronic energy + Delta-G solvation = -28759.605415 eV Core-core repulsion = 24915.101212 eV Total energy + Delta-G solvation = -3844.504203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35867 -39.36929 -36.79861 -36.46397 -35.35655 -33.78788 -32.76463 -31.63373 -28.70893 -28.25802 -26.93672 -26.37698 -25.46991 -23.89795 -22.62408 -21.91035 -21.01372 -20.54426 -19.01983 -17.85641 -17.01908 -16.74274 -16.57192 -16.04210 -15.86977 -14.99128 -14.87121 -14.68315 -14.30560 -14.07202 -13.87421 -13.71649 -13.42218 -13.10127 -12.87500 -12.76389 -12.63448 -12.58377 -12.29048 -12.11217 -12.05415 -11.68465 -11.58079 -11.49845 -11.19887 -10.97769 -10.69216 -10.59938 -10.46948 -10.34822 -10.25511 -10.12628 -10.10317 -9.80034 -8.89604 -8.81591 -8.67242 -8.31005 -7.83596 -6.48859 -4.18350 2.33720 3.04347 3.42769 3.45673 3.63793 4.03254 4.09494 4.41409 4.70742 4.92091 4.95575 5.01386 5.05119 5.07927 5.23386 5.29140 5.30685 5.43725 5.47908 5.50436 5.54003 5.60934 5.62716 5.66484 5.75155 5.79566 5.84256 5.91595 5.98094 6.05522 6.11918 6.14053 6.22104 6.26644 6.32282 6.37900 6.38004 6.65477 6.70554 6.74599 7.06424 7.33814 7.37723 7.39742 7.80427 8.11276 8.50304 8.57421 8.75321 9.52185 10.91138 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004810 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.443225 B = 5820.360954 C = 7278.824234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.611 5.611 3 C 0.088 3.912 4 C 0.641 3.359 5 O -0.570 6.570 6 O -0.356 6.356 7 C 0.104 3.896 8 C 0.084 3.916 9 H 0.109 0.891 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.112 4.112 13 C 0.051 3.949 14 N -0.523 5.523 15 C 0.054 3.946 16 C 0.018 3.982 17 O -0.379 6.379 18 C 0.184 3.816 19 C -0.594 4.594 20 H 0.060 0.940 21 C 0.019 3.981 22 N -0.910 5.910 23 Si 1.075 2.925 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.039 0.961 46 H 0.041 0.959 47 H -0.007 1.007 48 H -0.006 1.006 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 21.736 -0.827 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.354 5.354 3 C -0.055 4.055 4 C 0.396 3.604 5 O -0.458 6.458 6 O -0.269 6.269 7 C 0.030 3.970 8 C -0.023 4.023 9 H 0.126 0.874 10 C -0.149 4.149 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.077 4.077 14 N -0.247 5.247 15 C -0.074 4.074 16 C -0.061 4.061 17 O -0.299 6.299 18 C 0.110 3.890 19 C -0.632 4.632 20 H 0.079 0.921 21 C -0.184 4.184 22 N -0.546 5.546 23 Si 0.902 3.098 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.012 0.988 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.548 20.522 0.203 20.827 hybrid contribution 0.653 0.335 -1.320 1.511 sum -2.895 20.857 -1.118 21.086 Atomic orbital electron populations 1.21559 0.76958 1.02206 1.02649 1.46463 1.06565 1.04487 1.77837 1.21744 0.97452 0.84273 1.01982 1.18189 0.81949 0.83778 0.76488 1.91024 1.69296 1.30334 1.55175 1.86276 1.17351 1.37283 1.86025 1.23202 0.90433 0.79570 1.03805 1.22121 0.92498 0.98640 0.89089 0.87438 1.21590 0.95449 1.00596 0.97219 1.21581 0.96517 1.00777 0.97047 1.21539 0.99743 0.99285 0.94416 1.22092 0.88217 0.98581 0.98767 1.62172 1.11458 1.49182 1.01898 1.22346 1.01395 0.90009 0.93680 1.23108 0.97448 0.94542 0.90959 1.87973 1.70671 1.28032 1.43234 1.20295 0.93761 0.77916 0.97047 1.21852 1.30994 0.99904 1.10482 0.92140 1.25888 0.95909 0.93590 1.03036 1.70812 1.28318 1.39318 1.16166 0.83456 0.75905 0.76124 0.74315 1.20637 1.21171 1.21099 0.92019 0.90317 0.92031 0.92712 0.91381 0.90241 0.89600 0.91070 0.91803 0.91063 0.92085 0.92176 0.92074 0.91390 0.94586 0.91239 0.90033 0.90010 0.94248 0.94050 0.98924 0.98784 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.04 10.16 59.85 0.61 1.65 16 2 N -0.61 -7.58 3.27 -195.40 -0.64 -8.21 16 3 C 0.09 0.78 10.41 59.85 0.62 1.40 16 4 C 0.64 10.78 8.40 54.05 0.45 11.24 16 5 O -0.57 -11.77 16.13 -19.28 -0.31 -12.08 16 6 O -0.36 -5.85 8.11 -40.32 -0.33 -6.18 16 7 C 0.10 1.90 4.04 37.16 0.15 2.05 16 8 C 0.08 1.40 1.56 -67.73 -0.11 1.30 16 9 H 0.11 2.17 5.58 -51.93 -0.29 1.88 16 10 C -0.11 -1.59 5.19 -26.66 -0.14 -1.72 16 11 C -0.12 -1.54 6.00 -26.61 -0.16 -1.70 16 12 C -0.11 -1.30 6.09 -26.65 -0.16 -1.46 16 13 C 0.05 0.68 5.06 -3.83 -0.02 0.66 16 14 N -0.52 -7.78 4.65 -226.70 -1.05 -8.84 16 15 C 0.05 0.82 5.51 -3.82 -0.02 0.80 16 16 C 0.02 0.33 5.75 37.16 0.21 0.54 16 17 O -0.38 -8.53 5.25 -35.23 -0.19 -8.72 16 18 C 0.18 4.88 5.00 36.01 0.18 5.06 16 19 C -0.59 -17.31 9.43 -34.44 -0.32 -17.64 16 20 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 21 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 22 N -0.91 -27.86 13.65 55.43 0.76 -27.11 16 23 Si 1.07 25.73 29.90 -169.99 -5.08 20.64 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.47 7.79 -51.93 -0.40 0.06 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 32 H 0.08 0.76 7.38 -51.93 -0.38 0.38 16 33 H 0.09 1.76 5.09 -51.93 -0.26 1.49 16 34 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.54 6.65 -51.93 -0.35 0.19 16 42 H 0.07 0.80 8.06 -51.93 -0.42 0.39 16 43 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 44 H 0.08 1.35 6.21 -51.93 -0.32 1.02 16 45 H 0.04 0.69 6.46 -51.93 -0.34 0.36 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H -0.01 -0.19 8.01 -51.93 -0.42 -0.60 16 48 H -0.01 -0.15 8.01 -51.93 -0.42 -0.57 16 49 H 0.27 8.10 7.22 -40.82 -0.29 7.80 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -33.79 379.56 -8.47 -42.25 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.54 Total: -0.12 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 1.20 Total: 2.64 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.94 Total: -44.16 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.82 Total: -26.97 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.79 -8.47 -42.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495598090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.103 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds