Wall clock time and date at job start Tue Mar 31 2020 10:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99510 * 2 1 4 4 C 1.34772 * 120.00070 * 180.02562 * 2 1 3 5 5 O 1.21508 * 120.00369 * 359.97438 * 4 2 1 6 6 O 1.34637 * 119.99692 * 179.97438 * 4 2 1 7 7 C 1.45209 * 116.99786 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46887 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.45104 * 175.02886 * 8 7 6 10 10 C 1.53029 * 109.46443 * 55.05390 * 8 7 6 11 11 C 1.53115 * 109.28077 * 180.80156 * 10 8 7 12 12 C 1.53124 * 109.16019 * 57.65781 * 11 10 8 13 13 C 1.53036 * 109.27394 * 302.34493 * 12 11 10 14 14 N 1.46846 * 109.46350 * 294.99928 * 8 7 6 15 15 C 1.46902 * 111.00251 * 305.86113 * 14 8 7 16 16 C 1.52998 * 109.46748 * 301.83207 * 15 14 8 17 17 O 1.42906 * 109.47212 * 65.00172 * 16 15 14 18 18 C 1.42894 * 114.00137 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47263 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99758 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.09000 * 109.46779 * 239.99542 * 1 2 3 28 28 H 1.08993 * 109.47573 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47057 * 120.00141 * 1 2 3 30 30 H 1.09000 * 109.46933 * 270.00261 * 3 2 1 31 31 H 1.08994 * 109.47092 * 30.00191 * 3 2 1 32 32 H 1.08999 * 109.46731 * 150.00520 * 3 2 1 33 33 H 1.09004 * 109.46668 * 60.00072 * 7 6 4 34 34 H 1.08996 * 109.46997 * 299.99934 * 7 6 4 35 35 H 1.09002 * 109.50284 * 60.86079 * 10 8 7 36 36 H 1.09002 * 109.53666 * 300.76535 * 10 8 7 37 37 H 1.08996 * 109.52494 * 297.75374 * 11 10 8 38 38 H 1.09003 * 109.52433 * 177.55623 * 11 10 8 39 39 H 1.09001 * 109.50464 * 182.40384 * 12 11 10 40 40 H 1.08999 * 109.53670 * 62.30124 * 12 11 10 41 41 H 1.08999 * 109.46567 * 299.15973 * 13 12 11 42 42 H 1.08998 * 109.45196 * 179.18645 * 13 12 11 43 43 H 1.08996 * 109.47044 * 181.83571 * 15 14 8 44 44 H 1.08994 * 109.47663 * 61.83221 * 15 14 8 45 45 H 1.09001 * 109.47860 * 305.00477 * 16 15 14 46 46 H 1.09006 * 109.47541 * 184.99917 * 16 15 14 47 47 H 1.09001 * 109.47678 * 60.00187 * 18 17 16 48 48 H 1.09006 * 109.47375 * 299.99854 * 18 17 16 49 49 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5314 -2.2195 -0.0005 6 8 3.4853 -1.1671 -0.0010 7 6 4.1445 -2.4609 -0.0010 8 6 5.6614 -2.2603 -0.0010 9 1 6.1554 -3.2278 0.0881 10 6 6.0585 -1.3741 1.1817 11 6 7.5745 -1.1597 1.1661 12 6 7.9797 -0.5321 -0.1706 13 6 7.5268 -1.4428 -1.3141 14 7 6.0698 -1.6161 -1.2558 15 6 5.5824 -2.3709 -2.4181 16 6 6.1218 -3.8015 -2.3596 17 8 5.5775 -4.4696 -1.2196 18 6 6.0195 -5.8204 -1.0716 19 6 5.3873 -6.4242 0.1560 20 1 4.7148 -5.8353 0.7622 21 6 5.6666 -7.7285 0.5046 22 7 6.4851 -8.4457 -0.2339 23 14 4.8834 -8.4766 2.0266 24 1 5.3417 -9.8808 2.1797 25 1 5.2801 -7.6926 3.2237 26 1 3.4053 -8.4515 1.8859 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3790 1.5835 -1.0277 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 3.8513 -3.0180 -0.8908 34 1 3.8520 -3.0176 0.8892 35 1 5.7692 -1.8598 2.1136 36 1 5.5540 -0.4112 1.1013 37 1 8.0792 -2.1183 1.2863 38 1 7.8566 -0.4936 1.9815 39 1 9.0630 -0.4163 -0.2048 40 1 7.5058 0.4441 -0.2734 41 1 8.0122 -2.4141 -1.2189 42 1 7.8010 -0.9917 -2.2677 43 1 5.9264 -1.8901 -3.3338 44 1 4.4928 -2.3927 -2.4064 45 1 7.2087 -3.7772 -2.2817 46 1 5.8343 -4.3356 -3.2653 47 1 7.1044 -5.8384 -0.9672 48 1 5.7295 -6.3961 -1.9506 49 1 6.8920 -8.0571 -1.0240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495598090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:21 Heat of formation + Delta-G solvation = -145.489043 kcal Electronic energy + Delta-G solvation = -28760.608590 eV Core-core repulsion = 24915.101212 eV Total energy + Delta-G solvation = -3845.507378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67501 -40.66740 -38.46045 -37.68930 -36.61443 -35.49314 -34.54893 -32.86117 -30.20532 -29.08527 -28.50861 -27.92144 -26.60310 -25.17658 -24.79789 -23.21688 -22.20254 -21.76677 -20.31513 -19.20155 -18.99474 -18.03778 -17.93735 -17.54464 -17.37786 -16.32326 -16.27645 -15.84799 -15.70759 -15.47825 -15.33645 -15.13278 -14.73736 -14.37362 -14.27975 -14.16796 -13.90966 -13.57769 -13.47127 -13.43417 -13.31003 -13.14946 -12.84614 -12.77379 -12.63828 -12.59524 -12.36337 -12.09615 -11.95885 -11.78520 -11.69774 -11.51688 -11.28082 -11.13726 -10.87767 -10.81576 -10.33822 -9.82490 -9.18588 -8.85932 -6.56899 1.17337 1.47599 1.55782 1.71632 1.76815 2.43371 2.77109 2.93481 3.00091 3.08481 3.74349 3.78191 3.99231 4.03104 4.08980 4.22580 4.25893 4.29363 4.34018 4.38533 4.39679 4.47741 4.49015 4.50888 4.53495 4.69607 4.76707 4.79014 4.80859 4.85937 4.88952 4.93599 4.95600 4.99798 5.08936 5.10737 5.25729 5.26910 5.36766 5.45849 5.52595 5.62338 5.87509 6.05748 6.15896 6.22989 6.30404 6.56506 7.21352 7.22783 8.54762 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004810 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.443225 B = 5820.360954 C = 7278.824234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.601 5.601 3 C 0.083 3.917 4 C 0.629 3.371 5 O -0.619 6.619 6 O -0.343 6.343 7 C 0.116 3.884 8 C 0.092 3.908 9 H 0.069 0.931 10 C -0.106 4.106 11 C -0.120 4.120 12 C -0.106 4.106 13 C 0.048 3.952 14 N -0.515 5.515 15 C 0.062 3.938 16 C 0.012 3.988 17 O -0.384 6.384 18 C 0.198 3.802 19 C -0.614 4.614 20 H 0.050 0.950 21 C -0.026 4.026 22 N -0.928 5.928 23 Si 1.120 2.880 24 H -0.274 1.274 25 H -0.266 1.266 26 H -0.273 1.273 27 H 0.053 0.947 28 H 0.126 0.874 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.015 0.985 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.044 0.956 47 H -0.020 1.020 48 H -0.024 1.024 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 24.972 -0.467 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.342 5.342 3 C -0.058 4.058 4 C 0.384 3.616 5 O -0.512 6.512 6 O -0.256 6.256 7 C 0.041 3.959 8 C -0.016 4.016 9 H 0.087 0.913 10 C -0.144 4.144 11 C -0.157 4.157 12 C -0.143 4.143 13 C -0.080 4.080 14 N -0.239 5.239 15 C -0.066 4.066 16 C -0.067 4.067 17 O -0.304 6.304 18 C 0.123 3.877 19 C -0.652 4.652 20 H 0.068 0.932 21 C -0.223 4.223 22 N -0.564 5.564 23 Si 0.939 3.061 24 H -0.198 1.198 25 H -0.190 1.190 26 H -0.198 1.198 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.033 0.967 42 H 0.113 0.887 43 H 0.137 0.863 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.062 0.938 47 H -0.002 1.002 48 H -0.006 1.006 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.508 23.840 0.540 24.102 hybrid contribution 0.605 -0.538 -1.512 1.715 sum -2.902 23.302 -0.972 23.502 Atomic orbital electron populations 1.21829 0.75258 1.05023 1.01820 1.46776 1.07686 1.04147 1.75586 1.22023 0.97521 0.83094 1.03206 1.18641 0.81766 0.84700 0.76530 1.90987 1.69936 1.32565 1.57665 1.86266 1.17595 1.35668 1.86063 1.22860 0.91830 0.80087 1.01079 1.21868 0.90796 0.97622 0.91323 0.91321 1.21556 0.97140 1.00172 0.95504 1.21585 0.94640 1.00572 0.98949 1.21536 1.01175 0.99036 0.92571 1.22259 0.86452 0.98229 1.01045 1.62232 1.12918 1.47928 1.00775 1.22385 1.00509 0.88281 0.95451 1.23421 0.97930 0.95927 0.89391 1.88007 1.70976 1.25976 1.45423 1.19895 0.92622 0.79838 0.95393 1.22158 1.31110 1.00484 1.11398 0.93190 1.27431 0.95453 0.94164 1.05291 1.70931 1.29480 1.39588 1.16439 0.82916 0.75709 0.75909 0.71526 1.19846 1.19043 1.19849 0.92846 0.85569 0.92998 0.91566 0.87605 0.91035 0.92322 0.93872 0.92730 0.89996 0.93967 0.89786 0.89932 0.90066 0.96694 0.88663 0.86271 0.91547 0.93627 0.93771 1.00197 1.00634 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 10.16 127.77 1.30 3.07 16 2 N -0.60 -13.99 3.27 ******* -3.28 -17.27 16 3 C 0.08 1.19 10.41 127.77 1.33 2.52 16 4 C 0.63 21.46 8.40 129.79 1.09 22.55 16 5 O -0.62 -26.80 16.13 19.82 0.32 -26.48 16 6 O -0.34 -11.43 8.11 -55.46 -0.45 -11.88 16 7 C 0.12 4.50 4.04 71.98 0.29 4.79 16 8 C 0.09 3.16 1.56 44.94 0.07 3.23 16 9 H 0.07 2.95 5.58 -2.39 -0.01 2.93 16 10 C -0.11 -2.99 5.19 30.64 0.16 -2.83 16 11 C -0.12 -2.84 6.00 30.67 0.18 -2.66 16 12 C -0.11 -2.13 6.09 30.65 0.19 -1.95 16 13 C 0.05 1.16 5.06 86.33 0.44 1.60 16 14 N -0.51 -14.85 4.65 -871.14 -4.05 -18.90 16 15 C 0.06 1.84 5.51 86.30 0.48 2.32 16 16 C 0.01 0.43 5.75 71.98 0.41 0.84 16 17 O -0.38 -18.26 5.25 -148.98 -0.78 -19.04 16 18 C 0.20 11.05 5.00 71.24 0.36 11.40 16 19 C -0.61 -37.26 9.43 25.60 0.24 -37.02 16 20 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 21 C -0.03 -1.52 5.46 84.65 0.46 -1.06 16 22 N -0.93 -58.16 13.65 21.45 0.29 -57.87 16 23 Si 1.12 52.15 29.90 68.60 2.05 54.21 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.13 1.00 7.79 -2.39 -0.02 0.98 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.77 7.92 -2.39 -0.02 0.75 16 32 H 0.07 1.18 7.38 -2.39 -0.02 1.16 16 33 H 0.06 2.57 5.09 -2.39 -0.01 2.56 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.14 7.53 -2.39 -0.02 2.13 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.01 0.43 6.65 -2.39 -0.02 0.42 16 42 H 0.10 1.87 8.06 -2.39 -0.02 1.85 16 43 H 0.12 2.69 8.06 -2.39 -0.02 2.67 16 44 H 0.07 2.21 6.21 -2.39 -0.01 2.20 16 45 H 0.05 1.63 6.46 -2.39 -0.02 1.61 16 46 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 47 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 48 H -0.02 -1.40 8.01 -2.38 -0.02 -1.42 16 49 H 0.26 16.13 7.22 -92.71 -0.67 15.46 16 Total: -1.00 -77.78 379.56 2.11 -75.67 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.01 Total: 14.76 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 7.00 Total: 6.81 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -7.04 Total: -94.04 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -0.91 Total: -57.41 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.21 kcal Total: -77.78 2.11 -75.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495598090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.820 kcal (2) G-P(sol) polarization free energy of solvation -77.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds