Wall clock time and date at job start Tue Mar 31 2020 10:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.47059 * 2 1 4 4 C 1.34637 * 117.00083 * 179.97438 * 3 2 1 5 5 O 1.21515 * 119.99909 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00427 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99518 * 359.97438 * 6 4 3 8 8 C 1.46493 * 120.00161 * 180.02562 * 6 4 3 9 9 C 1.53126 * 109.51975 * 299.99331 * 8 6 4 10 10 C 1.53036 * 109.27785 * 177.62641 * 9 8 6 11 11 N 1.46849 * 109.52113 * 300.82264 * 10 9 8 12 12 C 1.46905 * 110.99664 * 185.83957 * 11 10 9 13 13 C 1.53000 * 109.47172 * 75.80542 * 12 11 10 14 14 O 1.42903 * 109.47362 * 65.01886 * 13 12 11 15 15 C 1.42898 * 114.00047 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47138 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99783 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00137 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99925 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00084 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46621 * 90.00298 * 20 18 16 22 22 H 1.48496 * 109.47331 * 210.00031 * 20 18 16 23 23 H 1.48495 * 109.47140 * 330.00775 * 20 18 16 24 24 C 1.46844 * 111.20087 * 61.74387 * 11 10 9 25 25 C 1.53037 * 109.52235 * 298.25802 * 24 11 10 26 26 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46746 * 300.00093 * 1 2 3 28 28 H 1.09000 * 109.47100 * 60.00058 * 1 2 3 29 29 H 1.08998 * 109.47256 * 240.00190 * 2 1 3 30 30 H 1.09000 * 109.47100 * 119.99942 * 2 1 3 31 31 H 1.08996 * 109.47354 * 270.00057 * 7 6 4 32 32 H 1.08999 * 109.47124 * 30.00292 * 7 6 4 33 33 H 1.09000 * 109.46800 * 150.00670 * 7 6 4 34 34 H 1.08999 * 109.52258 * 179.87152 * 8 6 4 35 35 H 1.08995 * 109.50214 * 57.68360 * 9 8 6 36 36 H 1.09002 * 109.50549 * 297.56655 * 9 8 6 37 37 H 1.08995 * 109.46292 * 180.80629 * 10 9 8 38 38 H 1.08996 * 109.45440 * 60.83427 * 10 9 8 39 39 H 1.08995 * 109.47048 * 315.80365 * 12 11 10 40 40 H 1.09004 * 109.46925 * 195.80246 * 12 11 10 41 41 H 1.09001 * 109.47402 * 185.02248 * 13 12 11 42 42 H 1.09004 * 109.46869 * 305.02019 * 13 12 11 43 43 H 1.08994 * 109.47210 * 300.00048 * 15 14 13 44 44 H 1.09000 * 109.47219 * 59.99941 * 15 14 13 45 45 H 0.97001 * 119.99362 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.46077 * 58.27441 * 24 11 10 47 47 H 1.08998 * 109.46144 * 178.24191 * 24 11 10 48 48 H 1.09006 * 109.50047 * 299.23638 * 25 24 11 49 49 H 1.08993 * 109.50440 * 179.12232 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8640 2.7908 0.0011 7 6 2.9715 3.9526 0.0005 8 6 5.3163 2.9827 0.0011 9 6 5.9181 2.3339 1.2508 10 6 7.4405 2.4859 1.2156 11 7 7.9699 1.8440 0.0056 12 6 9.4389 1.8489 0.0069 13 6 9.9517 0.7820 0.9762 14 8 9.5789 -0.5128 0.5003 15 6 10.0112 -1.5867 1.3380 16 6 9.5655 -2.8980 0.7440 17 1 9.0082 -2.9101 -0.1811 18 6 9.8701 -4.0823 1.3808 19 7 10.5492 -4.0676 2.5070 20 14 9.3169 -5.7077 0.6448 21 1 10.3674 -6.2187 -0.2722 22 1 9.0885 -6.6917 1.7332 23 1 8.0555 -5.5046 -0.1119 24 6 7.4426 2.4813 -1.2077 25 6 5.9202 2.3292 -1.2449 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.7510 4.2409 -1.0272 32 1 2.0440 3.6985 0.5137 33 1 3.4557 4.7828 0.5148 34 1 5.5428 4.0489 -0.0007 35 1 5.6584 1.2756 1.2722 36 1 5.5239 2.8240 2.1410 37 1 7.8732 2.0124 2.0969 38 1 7.6995 3.5446 1.2081 39 1 9.7987 2.8286 0.3213 40 1 9.8039 1.6330 -0.9973 41 1 11.0377 0.8451 1.0448 42 1 9.5154 0.9465 1.9615 43 1 11.0984 -1.5729 1.4144 44 1 9.5758 -1.4712 2.3306 45 1 10.7631 -4.9009 2.9551 46 1 7.7019 3.5400 -1.2038 47 1 7.8768 2.0044 -2.0864 48 1 5.6606 1.2707 -1.2627 49 1 5.5276 2.8158 -2.1376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496346932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:44 Heat of formation + Delta-G solvation = -119.492965 kcal Electronic energy + Delta-G solvation = -27462.871591 eV Core-core repulsion = 23618.491488 eV Total energy + Delta-G solvation = -3844.380103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81167 -38.98882 -37.18522 -36.18172 -35.51701 -32.95436 -32.35885 -31.53737 -30.80042 -28.71644 -26.94470 -26.47022 -24.52011 -23.22132 -22.90050 -22.16461 -21.30944 -20.55023 -19.92992 -17.75291 -16.94472 -16.78265 -16.27315 -15.86873 -15.54017 -15.33397 -14.89685 -14.70176 -14.23182 -14.19956 -14.04712 -13.74420 -13.64765 -13.22180 -13.03478 -12.94759 -12.81630 -12.59511 -12.26729 -12.15001 -12.07644 -11.74482 -11.59153 -11.52709 -11.11406 -11.00571 -10.79440 -10.74504 -10.67917 -10.50790 -10.45313 -10.20136 -10.01142 -9.85800 -8.94813 -8.83959 -8.66012 -8.00468 -7.92307 -5.98731 -3.98642 2.02859 2.82197 3.39059 3.43291 3.51031 3.69067 4.07786 4.46809 4.69599 4.77707 4.79308 4.80865 4.86156 4.99587 5.04153 5.13872 5.20343 5.31818 5.33671 5.37379 5.37856 5.41515 5.45625 5.53123 5.58590 5.66479 5.70899 5.72154 5.76308 5.86780 5.92944 6.03789 6.13574 6.20083 6.27459 6.32020 6.41178 6.46292 6.65605 7.23313 7.25924 7.39421 7.40458 7.58239 7.94201 8.29345 8.31062 8.77454 9.17004 9.65760 11.13155 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.003579 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.953826 B = 7820.763004 C = 9904.299459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 O -0.375 6.375 4 C 0.643 3.357 5 O -0.545 6.545 6 N -0.599 5.599 7 C 0.086 3.914 8 C 0.170 3.830 9 C -0.136 4.136 10 C 0.064 3.936 11 N -0.521 5.521 12 C 0.062 3.938 13 C 0.069 3.931 14 O -0.378 6.378 15 C 0.195 3.805 16 C -0.506 4.506 17 H 0.066 0.934 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.271 1.271 24 C 0.066 3.934 25 C -0.136 4.136 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.001 0.999 44 H 0.002 0.998 45 H 0.262 0.738 46 H 0.025 0.975 47 H 0.079 0.921 48 H 0.101 0.899 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.976 19.829 -4.813 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.005 3.995 3 O -0.290 6.290 4 C 0.397 3.603 5 O -0.432 6.432 6 N -0.340 5.340 7 C -0.057 4.057 8 C 0.068 3.932 9 C -0.175 4.175 10 C -0.065 4.065 11 N -0.246 5.246 12 C -0.065 4.065 13 C -0.009 4.009 14 O -0.298 6.298 15 C 0.121 3.879 16 C -0.545 4.545 17 H 0.085 0.915 18 C -0.146 4.146 19 N -0.542 5.542 20 Si 0.733 3.267 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.062 4.062 25 C -0.175 4.175 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.097 0.903 48 H 0.119 0.881 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.007 18.830 -4.847 25.832 hybrid contribution 0.225 -0.011 0.076 0.238 sum -16.781 18.819 -4.771 25.662 Atomic orbital electron populations 1.21815 0.92763 1.03037 1.03194 1.22944 0.94537 0.78808 1.03161 1.86199 1.22529 1.33163 1.87148 1.18125 0.81101 0.84207 0.76898 1.91083 1.59029 1.39169 1.53907 1.46794 1.06888 1.03303 1.76994 1.21751 0.94312 0.87803 1.01867 1.21153 0.75854 0.99452 0.96720 1.22078 0.94727 1.04762 0.95919 1.22021 0.94542 0.95700 0.94235 1.61721 1.07203 1.54502 1.01178 1.22126 0.86938 0.96236 1.01245 1.22214 0.96557 0.86344 0.95804 1.87952 1.78845 1.12518 1.50445 1.20149 0.93632 0.84279 0.89889 1.21086 1.34847 0.89581 1.08957 0.91528 1.24937 0.95328 0.99360 0.94986 1.69976 1.39925 1.27333 1.16976 0.86361 0.79203 0.82503 0.78598 1.20576 1.21186 1.19570 1.21979 0.94527 0.95937 0.93796 1.22079 0.94771 1.04669 0.95961 0.90025 0.91653 0.91673 0.91057 0.90986 0.92725 0.90573 0.91075 0.89486 0.88034 0.91942 0.90119 0.95661 0.94285 0.90275 0.94547 0.94772 0.98150 0.97998 0.92856 0.95725 0.90289 0.88094 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.67 16 2 C 0.08 0.84 6.19 37.16 0.23 1.07 16 3 O -0.38 -4.53 9.04 -40.32 -0.36 -4.89 16 4 C 0.64 9.08 7.81 54.06 0.42 9.50 16 5 O -0.55 -9.84 12.30 -19.28 -0.24 -10.08 16 6 N -0.60 -6.80 2.83 -179.60 -0.51 -7.30 16 7 C 0.09 0.63 10.41 59.85 0.62 1.25 16 8 C 0.17 1.97 2.61 -67.81 -0.18 1.80 16 9 C -0.14 -1.87 5.33 -26.65 -0.14 -2.01 16 10 C 0.06 0.89 5.29 -3.83 -0.02 0.87 16 11 N -0.52 -8.41 4.53 -234.67 -1.06 -9.47 16 12 C 0.06 0.98 5.39 -3.82 -0.02 0.96 16 13 C 0.07 1.36 6.13 37.16 0.23 1.59 16 14 O -0.38 -9.79 10.27 -35.23 -0.36 -10.16 16 15 C 0.20 5.68 5.69 36.01 0.20 5.88 16 16 C -0.51 -15.79 9.43 -34.44 -0.32 -16.11 16 17 H 0.07 2.09 7.81 -52.48 -0.41 1.68 16 18 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -28.12 13.29 55.43 0.74 -27.39 16 20 Si 0.91 22.95 29.54 -169.99 -5.02 17.92 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.07 0.88 5.43 -3.84 -0.02 0.86 16 25 C -0.14 -1.79 5.33 -26.65 -0.14 -1.93 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.54 7.37 -51.93 -0.38 0.16 16 33 H 0.07 0.39 7.92 -51.93 -0.41 -0.03 16 34 H 0.09 0.79 7.80 -51.93 -0.40 0.39 16 35 H 0.10 1.82 6.11 -51.93 -0.32 1.50 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.22 6.65 -51.93 -0.35 0.88 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 40 H 0.08 1.24 7.79 -51.93 -0.40 0.84 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.66 6.70 -51.93 -0.35 0.32 16 43 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 44 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 1.07 7.93 -51.93 -0.41 0.65 16 48 H 0.10 1.73 6.10 -51.93 -0.32 1.41 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -36.15 388.27 -8.62 -44.77 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -8.80 Total: -3.85 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 1.15 Total: 4.59 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.84 Total: -44.16 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.96 Total: -25.13 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.15 -8.62 -44.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496346932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.725 kcal (2) G-P(sol) polarization free energy of solvation -36.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds