Wall clock time and date at job start Tue Mar 31 2020 10:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.47059 * 2 1 4 4 C 1.34637 * 117.00083 * 179.97438 * 3 2 1 5 5 O 1.21515 * 119.99909 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00427 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99518 * 359.97438 * 6 4 3 8 8 C 1.46493 * 120.00161 * 180.02562 * 6 4 3 9 9 C 1.53126 * 109.51975 * 299.99331 * 8 6 4 10 10 C 1.53036 * 109.27785 * 177.62641 * 9 8 6 11 11 N 1.46849 * 109.52113 * 300.82264 * 10 9 8 12 12 C 1.46905 * 110.99664 * 185.83957 * 11 10 9 13 13 C 1.53000 * 109.47172 * 75.80542 * 12 11 10 14 14 O 1.42903 * 109.47362 * 65.01886 * 13 12 11 15 15 C 1.42898 * 114.00047 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47138 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99783 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00137 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99925 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00084 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46621 * 90.00298 * 20 18 16 22 22 H 1.48496 * 109.47331 * 210.00031 * 20 18 16 23 23 H 1.48495 * 109.47140 * 330.00775 * 20 18 16 24 24 C 1.46844 * 111.20087 * 61.74387 * 11 10 9 25 25 C 1.53037 * 109.52235 * 298.25802 * 24 11 10 26 26 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46746 * 300.00093 * 1 2 3 28 28 H 1.09000 * 109.47100 * 60.00058 * 1 2 3 29 29 H 1.08998 * 109.47256 * 240.00190 * 2 1 3 30 30 H 1.09000 * 109.47100 * 119.99942 * 2 1 3 31 31 H 1.08996 * 109.47354 * 270.00057 * 7 6 4 32 32 H 1.08999 * 109.47124 * 30.00292 * 7 6 4 33 33 H 1.09000 * 109.46800 * 150.00670 * 7 6 4 34 34 H 1.08999 * 109.52258 * 179.87152 * 8 6 4 35 35 H 1.08995 * 109.50214 * 57.68360 * 9 8 6 36 36 H 1.09002 * 109.50549 * 297.56655 * 9 8 6 37 37 H 1.08995 * 109.46292 * 180.80629 * 10 9 8 38 38 H 1.08996 * 109.45440 * 60.83427 * 10 9 8 39 39 H 1.08995 * 109.47048 * 315.80365 * 12 11 10 40 40 H 1.09004 * 109.46925 * 195.80246 * 12 11 10 41 41 H 1.09001 * 109.47402 * 185.02248 * 13 12 11 42 42 H 1.09004 * 109.46869 * 305.02019 * 13 12 11 43 43 H 1.08994 * 109.47210 * 300.00048 * 15 14 13 44 44 H 1.09000 * 109.47219 * 59.99941 * 15 14 13 45 45 H 0.97001 * 119.99362 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.46077 * 58.27441 * 24 11 10 47 47 H 1.08998 * 109.46144 * 178.24191 * 24 11 10 48 48 H 1.09006 * 109.50047 * 299.23638 * 25 24 11 49 49 H 1.08993 * 109.50440 * 179.12232 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8640 2.7908 0.0011 7 6 2.9715 3.9526 0.0005 8 6 5.3163 2.9827 0.0011 9 6 5.9181 2.3339 1.2508 10 6 7.4405 2.4859 1.2156 11 7 7.9699 1.8440 0.0056 12 6 9.4389 1.8489 0.0069 13 6 9.9517 0.7820 0.9762 14 8 9.5789 -0.5128 0.5003 15 6 10.0112 -1.5867 1.3380 16 6 9.5655 -2.8980 0.7440 17 1 9.0082 -2.9101 -0.1811 18 6 9.8701 -4.0823 1.3808 19 7 10.5492 -4.0676 2.5070 20 14 9.3169 -5.7077 0.6448 21 1 10.3674 -6.2187 -0.2722 22 1 9.0885 -6.6917 1.7332 23 1 8.0555 -5.5046 -0.1119 24 6 7.4426 2.4813 -1.2077 25 6 5.9202 2.3292 -1.2449 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.7510 4.2409 -1.0272 32 1 2.0440 3.6985 0.5137 33 1 3.4557 4.7828 0.5148 34 1 5.5428 4.0489 -0.0007 35 1 5.6584 1.2756 1.2722 36 1 5.5239 2.8240 2.1410 37 1 7.8732 2.0124 2.0969 38 1 7.6995 3.5446 1.2081 39 1 9.7987 2.8286 0.3213 40 1 9.8039 1.6330 -0.9973 41 1 11.0377 0.8451 1.0448 42 1 9.5154 0.9465 1.9615 43 1 11.0984 -1.5729 1.4144 44 1 9.5758 -1.4712 2.3306 45 1 10.7631 -4.9009 2.9551 46 1 7.7019 3.5400 -1.2038 47 1 7.8768 2.0044 -2.0864 48 1 5.6606 1.2707 -1.2627 49 1 5.5276 2.8158 -2.1376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496346932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:43 Heat of formation + Delta-G solvation = -145.515778 kcal Electronic energy + Delta-G solvation = -27464.000025 eV Core-core repulsion = 23618.491488 eV Total energy + Delta-G solvation = -3845.508537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82831 -40.08584 -38.60505 -37.67501 -36.63202 -34.97614 -33.75164 -32.36251 -31.86117 -30.29203 -28.71322 -27.50120 -25.62515 -24.48734 -24.25888 -23.77502 -22.57343 -21.64540 -20.96720 -18.71817 -18.63335 -17.98002 -17.76648 -17.40444 -17.10456 -16.49382 -16.32065 -15.83404 -15.76435 -15.59873 -15.38179 -14.89823 -14.75466 -14.59499 -14.04472 -13.94082 -13.67308 -13.58858 -13.52843 -13.30573 -13.13510 -13.08031 -12.92737 -12.83172 -12.70506 -12.52419 -12.35015 -12.28300 -12.05886 -11.96789 -11.58729 -11.48846 -11.43197 -11.23342 -11.11740 -10.85528 -10.16661 -9.75434 -9.03848 -8.33157 -6.44866 1.12339 1.36028 1.40053 1.52490 1.75150 2.34157 2.86265 2.95654 2.99865 3.28386 3.76148 3.81792 3.98253 4.00201 4.10089 4.16423 4.27473 4.30344 4.33449 4.35798 4.41403 4.45268 4.55823 4.57849 4.67322 4.68587 4.69581 4.74429 4.81577 4.86487 4.91764 4.94523 4.95661 5.00772 5.02950 5.12356 5.18764 5.31035 5.32259 5.39678 5.54366 5.64404 5.97167 6.19708 6.32133 6.34843 6.57474 6.88005 7.27164 7.27489 8.79473 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.003579 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.953826 B = 7820.763004 C = 9904.299459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 O -0.369 6.369 4 C 0.634 3.366 5 O -0.595 6.595 6 N -0.593 5.593 7 C 0.080 3.920 8 C 0.173 3.827 9 C -0.132 4.132 10 C 0.066 3.934 11 N -0.562 5.562 12 C 0.073 3.927 13 C 0.057 3.943 14 O -0.397 6.397 15 C 0.212 3.788 16 C -0.547 4.547 17 H 0.055 0.945 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.271 1.271 24 C 0.070 3.930 25 C -0.132 4.132 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.032 0.968 43 H -0.014 1.014 44 H -0.023 1.023 45 H 0.271 0.729 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.024 21.997 -5.624 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.002 4.002 3 O -0.283 6.283 4 C 0.388 3.612 5 O -0.486 6.486 6 N -0.333 5.333 7 C -0.061 4.061 8 C 0.072 3.928 9 C -0.171 4.171 10 C -0.062 4.062 11 N -0.288 5.288 12 C -0.055 4.055 13 C -0.020 4.020 14 O -0.317 6.317 15 C 0.137 3.863 16 C -0.584 4.584 17 H 0.073 0.927 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.805 3.195 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.058 4.058 25 C -0.171 4.171 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.004 0.996 44 H -0.005 1.005 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.075 21.058 -5.658 28.322 hybrid contribution 0.544 -0.620 0.375 0.906 sum -17.531 20.438 -5.282 27.440 Atomic orbital electron populations 1.21805 0.89581 1.04379 1.03933 1.23144 0.96910 0.78167 1.01929 1.86216 1.21420 1.33872 1.86840 1.18511 0.81337 0.84741 0.76592 1.91070 1.60171 1.41159 1.56163 1.46956 1.07400 1.03350 1.75574 1.22038 0.93911 0.86816 1.03312 1.21214 0.75806 1.01234 0.94571 1.21981 0.95095 1.01938 0.98074 1.21988 0.94256 0.97343 0.92569 1.61584 1.07396 1.56870 1.02971 1.22024 0.87198 0.96271 0.99963 1.22634 0.97582 0.84610 0.97210 1.87908 1.79162 1.14333 1.50304 1.19740 0.92270 0.85304 0.89024 1.21376 1.36356 0.91343 1.09364 0.92687 1.25956 0.94662 1.03384 0.95176 1.70073 1.39986 1.29039 1.17918 0.85204 0.78945 0.77115 0.78267 1.18751 1.19504 1.19517 1.21972 0.94126 0.97626 0.92065 1.21991 0.95201 1.02012 0.97851 0.88372 0.90940 0.90790 0.92213 0.92487 0.91249 0.90525 0.88178 0.85019 0.93310 0.90200 0.92435 0.91814 0.90176 0.90381 0.93404 0.94985 0.99624 1.00535 0.92011 0.91980 0.91312 0.93069 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 10.29 71.98 0.74 -1.09 16 2 C 0.07 1.60 6.19 71.98 0.45 2.05 16 3 O -0.37 -9.04 9.04 -55.47 -0.50 -9.54 16 4 C 0.63 18.47 7.81 129.79 1.01 19.48 16 5 O -0.60 -23.28 12.30 19.79 0.24 -23.03 16 6 N -0.59 -12.64 2.83 -952.53 -2.70 -15.33 16 7 C 0.08 0.92 10.41 127.77 1.33 2.25 16 8 C 0.17 3.68 2.61 45.07 0.12 3.79 16 9 C -0.13 -3.59 5.33 30.65 0.16 -3.43 16 10 C 0.07 1.79 5.29 86.33 0.46 2.25 16 11 N -0.56 -17.90 4.53 -896.37 -4.06 -21.96 16 12 C 0.07 2.23 5.39 86.30 0.47 2.69 16 13 C 0.06 2.30 6.13 71.98 0.44 2.74 16 14 O -0.40 -21.57 10.27 -148.98 -1.53 -23.10 16 15 C 0.21 12.99 5.69 71.24 0.41 13.40 16 16 C -0.55 -35.46 9.43 25.60 0.24 -35.21 16 17 H 0.05 3.60 7.81 -2.91 -0.02 3.57 16 18 C 0.01 0.39 5.46 84.65 0.46 0.86 16 19 N -0.93 -58.95 13.29 21.45 0.28 -58.66 16 20 Si 0.98 47.55 29.54 68.60 2.03 49.58 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 24 C 0.07 1.74 5.43 86.33 0.47 2.20 16 25 C -0.13 -3.36 5.33 30.64 0.16 -3.19 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.90 7.37 -2.39 -0.02 0.88 16 33 H 0.10 0.61 7.92 -2.39 -0.02 0.59 16 34 H 0.13 1.70 7.80 -2.39 -0.02 1.68 16 35 H 0.05 1.87 6.11 -2.39 -0.01 1.86 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.78 6.65 -2.39 -0.02 1.76 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.81 8.00 -2.39 -0.02 1.79 16 40 H 0.08 2.38 7.79 -2.38 -0.02 2.37 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.03 1.29 6.70 -2.39 -0.02 1.28 16 43 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 45 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 1.81 7.93 -2.39 -0.02 1.79 16 48 H 0.05 1.86 6.10 -2.38 -0.01 1.84 16 49 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -84.40 388.27 1.58 -82.81 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.90 Total: 10.45 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.92 Total: 8.79 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -6.47 Total: -95.96 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -1.79 Total: -55.67 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -84.40 1.58 -82.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496346932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.703 kcal (2) G-P(sol) polarization free energy of solvation -84.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds