Wall clock time and date at job start Tue Mar 31 2020 11:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46978 * 2 1 4 4 C 1.53001 * 109.47124 * 175.00131 * 3 2 1 5 5 C 1.53001 * 109.47296 * 295.20088 * 4 3 2 6 6 C 1.52992 * 109.47455 * 295.00838 * 3 2 1 7 7 N 1.46904 * 109.47044 * 176.99494 * 6 3 2 8 8 C 1.46894 * 110.99852 * 286.94810 * 7 6 3 9 9 C 1.50701 * 109.47506 * 296.24729 * 8 7 6 10 10 H 1.07996 * 119.99567 * 5.08572 * 9 8 7 11 11 C 1.37878 * 120.00183 * 185.08674 * 9 8 7 12 12 N 1.31513 * 120.00143 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99829 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47190 * 90.00063 * 13 11 9 15 15 H 1.48496 * 109.47033 * 209.99665 * 13 11 9 16 16 H 1.48495 * 109.47188 * 329.99854 * 13 11 9 17 17 C 1.46899 * 110.99831 * 162.99908 * 7 6 3 18 18 C 1.50704 * 109.47122 * 196.39160 * 17 7 6 19 19 C 1.36666 * 120.11438 * 259.72605 * 18 17 7 20 20 C 1.38788 * 120.52206 * 179.75785 * 19 18 17 21 21 C 1.37784 * 120.66984 * 0.49475 * 20 19 18 22 22 C 1.39082 * 119.77891 * 359.76856 * 21 20 19 23 23 N 1.37695 * 133.51696 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.05508 * 359.97438 * 23 22 21 25 25 C 1.36820 * 109.87703 * 179.97438 * 23 22 21 26 26 C 1.34237 * 109.94096 * 359.97438 * 25 23 22 27 27 C 1.39589 * 120.12097 * 79.99508 * 18 17 7 28 28 H 1.08995 * 109.47302 * 65.44931 * 1 2 3 29 29 H 1.08999 * 109.47126 * 185.44579 * 1 2 3 30 30 H 1.08993 * 109.47204 * 305.44692 * 1 2 3 31 31 H 1.09003 * 109.47081 * 240.00620 * 2 1 3 32 32 H 1.08992 * 109.47464 * 120.00413 * 2 1 3 33 33 H 1.09002 * 109.46517 * 55.00780 * 3 2 1 34 34 H 1.09008 * 109.46458 * 55.19771 * 4 3 2 35 35 H 1.08992 * 109.47178 * 175.19606 * 4 3 2 36 36 H 1.09004 * 109.46732 * 185.48370 * 5 4 3 37 37 H 1.09001 * 109.46946 * 305.48131 * 5 4 3 38 38 H 1.08997 * 109.47406 * 65.48601 * 5 4 3 39 39 H 1.09003 * 109.47416 * 56.99621 * 6 3 2 40 40 H 1.09002 * 109.47072 * 296.99891 * 6 3 2 41 41 H 1.08999 * 109.47468 * 56.24860 * 8 7 6 42 42 H 1.09003 * 109.47322 * 176.24653 * 8 7 6 43 43 H 0.97000 * 120.00000 * 179.97438 * 12 11 9 44 44 H 1.09002 * 109.47124 * 316.38729 * 17 7 6 45 45 H 1.08994 * 109.47611 * 76.38547 * 17 7 6 46 46 H 1.07997 * 119.73419 * 359.97000 * 19 18 17 47 47 H 1.08005 * 119.65906 * 180.26103 * 20 19 18 48 48 H 1.08000 * 120.10739 * 179.78346 * 21 20 19 49 49 H 1.08002 * 125.03173 * 179.97438 * 25 23 22 50 50 H 1.07999 * 126.50303 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 0.1257 5 6 3.9652 0.8690 1.4857 6 6 1.6351 2.1267 -1.3072 7 7 2.0619 3.5321 -1.2769 8 6 1.2181 4.3190 -0.3679 9 6 -0.1977 4.3351 -0.8841 10 1 -0.4634 3.7465 -1.7497 11 6 -1.1536 5.1012 -0.2514 12 7 -2.3890 5.1156 -0.7022 13 14 -0.6936 6.1198 1.2455 14 1 -0.2565 7.4705 0.8098 15 1 -1.8723 6.2456 2.1398 16 1 0.4137 5.4531 1.9766 17 6 2.0635 4.1108 -2.6271 18 6 2.8688 5.3847 -2.6266 19 6 2.2369 6.5953 -2.5734 20 6 2.9704 7.7736 -2.5674 21 6 4.3467 7.7450 -2.6253 22 6 5.0103 6.5242 -2.6854 23 7 6.3393 6.1697 -2.7496 24 1 7.0822 6.7932 -2.7636 25 6 6.4558 4.8070 -2.7905 26 6 5.2385 4.2422 -2.7548 27 6 4.2625 5.3324 -2.6862 28 1 -0.3634 0.4270 -0.9347 29 1 -0.3633 -1.0230 0.0975 30 1 -0.3633 0.5959 0.8371 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6054 1.9815 0.8419 34 1 3.9955 0.8340 -0.6682 35 1 3.9352 2.4659 0.0401 36 1 5.0437 0.9598 1.6153 37 1 3.4565 1.4195 2.2771 38 1 3.6808 -0.1821 1.5335 39 1 0.5523 2.0783 -1.4224 40 1 2.1127 1.6198 -2.1457 41 1 1.2375 3.8707 0.6254 42 1 1.5964 5.3398 -0.3132 43 1 -3.0615 5.6542 -0.2568 44 1 2.5065 3.4013 -3.3261 45 1 1.0395 4.3284 -2.9305 46 1 1.1585 6.6353 -2.5321 47 1 2.4568 8.7226 -2.5208 48 1 4.9083 8.6675 -2.6236 49 1 7.3889 4.2659 -2.8437 50 1 5.0202 3.1847 -2.7741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000513737199.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:59 Heat of formation + Delta-G solvation = 43.122043 kcal Electronic energy + Delta-G solvation = -27416.933850 eV Core-core repulsion = 24022.747278 eV Total energy + Delta-G solvation = -3394.186573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84206 -38.08679 -36.66873 -35.01034 -32.44877 -31.62223 -31.30632 -29.32085 -28.64884 -28.06129 -26.83105 -24.49705 -23.25771 -22.18649 -21.79428 -21.35697 -20.48334 -19.70925 -18.76489 -17.20235 -16.82748 -15.76480 -15.21448 -14.93576 -14.63452 -14.27084 -14.13073 -14.00443 -13.87219 -13.64413 -13.32270 -13.12715 -12.75960 -12.59241 -12.30079 -12.21045 -12.09034 -11.60683 -11.38663 -11.24931 -11.24071 -11.08736 -11.03071 -10.84097 -10.72714 -10.59229 -10.32780 -10.18111 -10.05308 -9.86100 -9.65161 -9.61716 -9.45677 -9.16343 -8.52618 -7.78284 -7.29669 -6.98773 -6.05662 -4.03128 1.54651 2.12940 3.07553 3.31553 3.39235 3.40198 3.44986 4.33943 4.45074 5.06574 5.11041 5.18325 5.28303 5.30189 5.38623 5.44990 5.55067 5.65846 5.66557 5.70728 5.80320 5.85993 5.92577 6.02209 6.04971 6.12171 6.19950 6.25025 6.28932 6.33948 6.35957 6.41957 6.44363 6.49956 6.52388 6.61154 6.70881 6.78924 6.93867 6.98725 6.99900 7.01819 7.06982 7.07880 7.15720 7.25410 7.39453 7.63378 7.66694 7.80078 8.17531 8.24713 8.50854 8.97506 9.59100 11.07113 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009141 B = 0.006316 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.292571 B = 4432.368977 C = 6551.612740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.079 4.079 4 C -0.109 4.109 5 C -0.151 4.151 6 C 0.062 3.938 7 N -0.521 5.521 8 C 0.153 3.847 9 C -0.541 4.541 10 H 0.075 0.925 11 C 0.075 3.925 12 N -0.900 5.900 13 Si 0.870 3.130 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.265 1.265 17 C 0.094 3.906 18 C -0.005 4.005 19 C -0.135 4.135 20 C -0.096 4.096 21 C -0.148 4.148 22 C 0.087 3.913 23 N -0.604 5.604 24 H 0.408 0.592 25 C 0.027 3.973 26 C -0.179 4.179 27 C -0.090 4.090 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.025 0.975 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.130 0.870 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.162 0.838 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.736 -2.735 -2.629 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.098 4.098 4 C -0.147 4.147 5 C -0.209 4.209 6 C -0.066 4.066 7 N -0.244 5.244 8 C 0.026 3.974 9 C -0.579 4.579 10 H 0.093 0.907 11 C -0.127 4.127 12 N -0.539 5.539 13 Si 0.698 3.302 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.190 1.190 17 C -0.034 4.034 18 C -0.006 4.006 19 C -0.155 4.155 20 C -0.115 4.115 21 C -0.169 4.169 22 C -0.019 4.019 23 N -0.208 5.208 24 H 0.244 0.756 25 C -0.098 4.098 26 C -0.204 4.204 27 C -0.095 4.095 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.148 0.852 47 H 0.137 0.863 48 H 0.128 0.872 49 H 0.179 0.821 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.151 -2.618 -2.419 16.540 hybrid contribution -0.420 0.972 0.640 1.237 sum 15.731 -1.646 -1.778 15.916 Atomic orbital electron populations 1.21794 0.95887 1.00301 1.02923 1.21564 0.95898 0.96980 1.00880 1.21158 0.95104 0.94498 0.99056 1.21448 0.95771 1.01892 0.95592 1.21836 1.00083 1.00428 0.98519 1.22063 0.99709 0.88978 0.95857 1.62383 1.52850 1.01541 1.07595 1.20180 0.91098 0.93451 0.92634 1.21630 0.93062 1.28181 1.15056 0.90745 1.24886 0.94793 0.96250 0.96754 1.69924 1.02107 1.40954 1.40866 0.86922 0.78149 0.81377 0.83784 1.20134 1.21572 1.18963 1.20925 0.98476 0.92427 0.91547 1.19084 0.90982 0.95173 0.95338 1.20804 1.00777 0.91484 1.02423 1.20791 0.92659 0.98314 0.99739 1.19847 0.94232 0.93963 1.08902 1.18238 0.83507 0.95390 1.04811 1.41664 1.05796 1.06619 1.66671 0.75636 1.21651 0.99299 0.82461 1.06388 1.21650 0.90600 0.98248 1.09934 1.18989 0.92692 0.91949 1.05853 0.92157 0.93936 0.92546 0.92821 0.92532 0.90967 0.93278 0.90396 0.93736 0.93121 0.93366 0.92667 0.93286 0.95662 0.95581 0.92857 0.92223 0.91964 0.85209 0.86345 0.87232 0.82109 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.53 37.16 0.35 -1.98 16 2 C -0.12 -1.65 5.27 -26.73 -0.14 -1.79 16 3 C -0.08 -1.30 1.87 -90.62 -0.17 -1.47 16 4 C -0.11 -1.62 5.34 -26.73 -0.14 -1.76 16 5 C -0.15 -1.98 9.53 37.16 0.35 -1.62 16 6 C 0.06 1.14 4.06 -3.83 -0.02 1.12 16 7 N -0.52 -10.38 3.89 -237.52 -0.92 -11.30 16 8 C 0.15 3.59 3.89 -4.98 -0.02 3.57 16 9 C -0.54 -14.36 7.77 -34.44 -0.27 -14.62 16 10 H 0.07 2.15 6.29 -52.49 -0.33 1.82 16 11 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 13 Si 0.87 21.52 27.37 -169.99 -4.65 16.87 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.27 -6.43 6.69 56.52 0.38 -6.05 16 17 C 0.09 1.82 4.85 -4.97 -0.02 1.79 16 18 C 0.00 -0.09 4.80 -104.68 -0.50 -0.59 16 19 C -0.14 -2.56 8.78 -39.95 -0.35 -2.91 16 20 C -0.10 -1.57 10.01 -39.54 -0.40 -1.97 16 21 C -0.15 -2.23 10.08 -39.43 -0.40 -2.63 16 22 C 0.09 1.35 7.28 -83.99 -0.61 0.74 16 23 N -0.60 -7.30 6.07 -10.65 -0.06 -7.36 16 24 H 0.41 3.52 8.96 -40.82 -0.37 3.16 16 25 C 0.03 0.32 11.81 -16.74 -0.20 0.12 16 26 C -0.18 -2.62 10.94 -37.67 -0.41 -3.03 16 27 C -0.09 -1.55 6.16 -105.14 -0.65 -2.20 16 28 H 0.06 1.01 6.77 -51.93 -0.35 0.66 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.75 6.46 -51.93 -0.34 0.41 16 33 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.08 1.30 7.56 -51.93 -0.39 0.91 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.58 6.72 -51.93 -0.35 0.23 16 39 H 0.06 1.16 4.74 -51.93 -0.25 0.92 16 40 H 0.05 0.82 7.70 -51.93 -0.40 0.42 16 41 H 0.03 0.62 5.99 -51.93 -0.31 0.31 16 42 H 0.03 0.65 6.03 -51.93 -0.31 0.33 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 45 H 0.06 1.36 6.12 -51.93 -0.32 1.04 16 46 H 0.13 2.67 8.01 -52.49 -0.42 2.25 16 47 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 48 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 50 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -30.03 384.72 -11.02 -41.04 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -8.26 Total: 8.19 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -3.68 Total: -27.23 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.21 Total: -44.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.65 Total: 16.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.03 -11.02 -41.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513737199.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.165 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds