Wall clock time and date at job start Tue Mar 31 2020 11:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46978 * 2 1 4 4 C 1.53001 * 109.47124 * 175.00131 * 3 2 1 5 5 C 1.53001 * 109.47296 * 295.20088 * 4 3 2 6 6 C 1.52992 * 109.47455 * 295.00838 * 3 2 1 7 7 N 1.46904 * 109.47044 * 176.99494 * 6 3 2 8 8 C 1.46894 * 110.99852 * 286.94810 * 7 6 3 9 9 C 1.50701 * 109.47506 * 296.24729 * 8 7 6 10 10 H 1.07996 * 119.99567 * 5.08572 * 9 8 7 11 11 C 1.37878 * 120.00183 * 185.08674 * 9 8 7 12 12 N 1.31513 * 120.00143 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99829 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47190 * 90.00063 * 13 11 9 15 15 H 1.48496 * 109.47033 * 209.99665 * 13 11 9 16 16 H 1.48495 * 109.47188 * 329.99854 * 13 11 9 17 17 C 1.46899 * 110.99831 * 162.99908 * 7 6 3 18 18 C 1.50704 * 109.47122 * 196.39160 * 17 7 6 19 19 C 1.36666 * 120.11438 * 259.72605 * 18 17 7 20 20 C 1.38788 * 120.52206 * 179.75785 * 19 18 17 21 21 C 1.37784 * 120.66984 * 0.49475 * 20 19 18 22 22 C 1.39082 * 119.77891 * 359.76856 * 21 20 19 23 23 N 1.37695 * 133.51696 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.05508 * 359.97438 * 23 22 21 25 25 C 1.36820 * 109.87703 * 179.97438 * 23 22 21 26 26 C 1.34237 * 109.94096 * 359.97438 * 25 23 22 27 27 C 1.39589 * 120.12097 * 79.99508 * 18 17 7 28 28 H 1.08995 * 109.47302 * 65.44931 * 1 2 3 29 29 H 1.08999 * 109.47126 * 185.44579 * 1 2 3 30 30 H 1.08993 * 109.47204 * 305.44692 * 1 2 3 31 31 H 1.09003 * 109.47081 * 240.00620 * 2 1 3 32 32 H 1.08992 * 109.47464 * 120.00413 * 2 1 3 33 33 H 1.09002 * 109.46517 * 55.00780 * 3 2 1 34 34 H 1.09008 * 109.46458 * 55.19771 * 4 3 2 35 35 H 1.08992 * 109.47178 * 175.19606 * 4 3 2 36 36 H 1.09004 * 109.46732 * 185.48370 * 5 4 3 37 37 H 1.09001 * 109.46946 * 305.48131 * 5 4 3 38 38 H 1.08997 * 109.47406 * 65.48601 * 5 4 3 39 39 H 1.09003 * 109.47416 * 56.99621 * 6 3 2 40 40 H 1.09002 * 109.47072 * 296.99891 * 6 3 2 41 41 H 1.08999 * 109.47468 * 56.24860 * 8 7 6 42 42 H 1.09003 * 109.47322 * 176.24653 * 8 7 6 43 43 H 0.97000 * 120.00000 * 179.97438 * 12 11 9 44 44 H 1.09002 * 109.47124 * 316.38729 * 17 7 6 45 45 H 1.08994 * 109.47611 * 76.38547 * 17 7 6 46 46 H 1.07997 * 119.73419 * 359.97000 * 19 18 17 47 47 H 1.08005 * 119.65906 * 180.26103 * 20 19 18 48 48 H 1.08000 * 120.10739 * 179.78346 * 21 20 19 49 49 H 1.08002 * 125.03173 * 179.97438 * 25 23 22 50 50 H 1.07999 * 126.50303 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 0.1257 5 6 3.9652 0.8690 1.4857 6 6 1.6351 2.1267 -1.3072 7 7 2.0619 3.5321 -1.2769 8 6 1.2181 4.3190 -0.3679 9 6 -0.1977 4.3351 -0.8841 10 1 -0.4634 3.7465 -1.7497 11 6 -1.1536 5.1012 -0.2514 12 7 -2.3890 5.1156 -0.7022 13 14 -0.6936 6.1198 1.2455 14 1 -0.2565 7.4705 0.8098 15 1 -1.8723 6.2456 2.1398 16 1 0.4137 5.4531 1.9766 17 6 2.0635 4.1108 -2.6271 18 6 2.8688 5.3847 -2.6266 19 6 2.2369 6.5953 -2.5734 20 6 2.9704 7.7736 -2.5674 21 6 4.3467 7.7450 -2.6253 22 6 5.0103 6.5242 -2.6854 23 7 6.3393 6.1697 -2.7496 24 1 7.0822 6.7932 -2.7636 25 6 6.4558 4.8070 -2.7905 26 6 5.2385 4.2422 -2.7548 27 6 4.2625 5.3324 -2.6862 28 1 -0.3634 0.4270 -0.9347 29 1 -0.3633 -1.0230 0.0975 30 1 -0.3633 0.5959 0.8371 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6054 1.9815 0.8419 34 1 3.9955 0.8340 -0.6682 35 1 3.9352 2.4659 0.0401 36 1 5.0437 0.9598 1.6153 37 1 3.4565 1.4195 2.2771 38 1 3.6808 -0.1821 1.5335 39 1 0.5523 2.0783 -1.4224 40 1 2.1127 1.6198 -2.1457 41 1 1.2375 3.8707 0.6254 42 1 1.5964 5.3398 -0.3132 43 1 -3.0615 5.6542 -0.2568 44 1 2.5065 3.4013 -3.3261 45 1 1.0395 4.3284 -2.9305 46 1 1.1585 6.6353 -2.5321 47 1 2.4568 8.7226 -2.5208 48 1 4.9083 8.6675 -2.6236 49 1 7.3889 4.2659 -2.8437 50 1 5.0202 3.1847 -2.7741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513737199.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:58 Heat of formation + Delta-G solvation = 26.859474 kcal Electronic energy + Delta-G solvation = -27417.639048 eV Core-core repulsion = 24022.747278 eV Total energy + Delta-G solvation = -3394.891771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98502 -39.60597 -37.91605 -36.47489 -34.50517 -32.98675 -32.48730 -30.52950 -30.04860 -29.72433 -28.25718 -26.00653 -24.99330 -23.40236 -23.06578 -22.60381 -21.87522 -20.95026 -20.28462 -19.03179 -18.25152 -16.98455 -16.75769 -16.42976 -16.24450 -15.99638 -15.33244 -15.29423 -15.18551 -14.97521 -14.70088 -14.48220 -14.33854 -13.91442 -13.82754 -13.44600 -13.35074 -13.23828 -12.89828 -12.72630 -12.69785 -12.55359 -12.36215 -12.31474 -12.30465 -12.06314 -11.89153 -11.78954 -11.65726 -11.49698 -11.17833 -11.13424 -10.92956 -10.73144 -10.38590 -9.00571 -8.82038 -8.39878 -8.28076 -6.28436 0.32864 0.81842 1.30585 1.32068 1.43247 2.01486 2.33360 2.42263 2.99471 3.08083 3.55340 3.93101 4.00031 4.12766 4.18507 4.21866 4.30157 4.42554 4.47296 4.48982 4.60251 4.61630 4.65787 4.70086 4.72565 4.87496 4.93683 5.00014 5.03080 5.04187 5.07694 5.08397 5.14152 5.18047 5.19760 5.24623 5.30824 5.37454 5.39195 5.43817 5.53006 5.60817 5.69120 5.70549 5.77177 5.88067 5.92012 6.05663 6.18694 6.38865 6.43856 6.56795 6.77098 6.91232 7.36732 8.87970 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.009141 B = 0.006316 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.292571 B = 4432.368977 C = 6551.612740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.075 4.075 4 C -0.101 4.101 5 C -0.147 4.147 6 C 0.064 3.936 7 N -0.508 5.508 8 C 0.171 3.829 9 C -0.526 4.526 10 H 0.038 0.962 11 C 0.021 3.979 12 N -0.944 5.944 13 Si 0.929 3.071 14 H -0.269 1.269 15 H -0.284 1.284 16 H -0.255 1.255 17 C 0.104 3.896 18 C -0.030 4.030 19 C -0.158 4.158 20 C -0.112 4.112 21 C -0.133 4.133 22 C 0.074 3.926 23 N -0.587 5.587 24 H 0.429 0.571 25 C 0.063 3.937 26 C -0.217 4.217 27 C -0.109 4.109 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.020 0.980 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.016 0.984 43 H 0.263 0.737 44 H 0.075 0.925 45 H 0.022 0.978 46 H 0.094 0.906 47 H 0.135 0.865 48 H 0.146 0.854 49 H 0.211 0.789 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.419 -3.178 -1.932 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.094 4.094 4 C -0.138 4.138 5 C -0.204 4.204 6 C -0.064 4.064 7 N -0.230 5.230 8 C 0.044 3.956 9 C -0.565 4.565 10 H 0.057 0.943 11 C -0.177 4.177 12 N -0.585 5.585 13 Si 0.754 3.246 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.179 1.179 17 C -0.024 4.024 18 C -0.031 4.031 19 C -0.178 4.178 20 C -0.132 4.132 21 C -0.153 4.153 22 C -0.033 4.033 23 N -0.192 5.192 24 H 0.268 0.732 25 C -0.063 4.063 26 C -0.241 4.241 27 C -0.114 4.114 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.040 0.960 46 H 0.112 0.888 47 H 0.153 0.847 48 H 0.164 0.836 49 H 0.227 0.773 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 20.874 -3.053 -1.726 21.166 hybrid contribution -1.786 1.054 0.292 2.094 sum 19.088 -1.998 -1.434 19.246 Atomic orbital electron populations 1.21771 0.97137 1.01158 1.00708 1.21528 0.94672 0.95588 1.02722 1.21113 0.96734 0.95335 0.96253 1.21341 0.93771 1.01222 0.97510 1.21793 1.01001 1.00947 0.96677 1.22117 0.97717 0.88456 0.98123 1.62421 1.51159 1.01921 1.07482 1.19862 0.89461 0.93415 0.92898 1.21762 0.94758 1.26606 1.13411 0.94342 1.25650 0.94664 0.97653 0.99753 1.70057 1.03280 1.42522 1.42686 0.85977 0.78179 0.80045 0.80444 1.19391 1.21017 1.17928 1.20811 0.96627 0.93723 0.91263 1.19002 0.92229 0.94229 0.97635 1.20669 0.99276 0.93237 1.04641 1.20938 0.93696 0.97849 1.00673 1.20169 0.93599 0.95361 1.06215 1.18384 0.85040 0.94965 1.04955 1.41715 1.05065 1.07379 1.65029 0.73162 1.22335 1.00066 0.82083 1.01847 1.21796 0.91151 0.98154 1.13035 1.19248 0.92169 0.94201 1.05807 0.94513 0.91433 0.94701 0.90996 0.90422 0.94102 0.91475 0.92504 0.92107 0.94388 0.91805 0.96216 0.91265 0.96318 0.96547 0.92804 0.90621 0.95997 0.88810 0.84744 0.83641 0.77253 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.53 71.98 0.69 -4.01 16 2 C -0.11 -2.94 5.27 30.60 0.16 -2.77 16 3 C -0.08 -2.48 1.87 -10.79 -0.02 -2.50 16 4 C -0.10 -2.80 5.34 30.59 0.16 -2.63 16 5 C -0.15 -3.45 9.53 71.98 0.69 -2.76 16 6 C 0.06 2.43 4.06 86.30 0.35 2.79 16 7 N -0.51 -21.21 3.89 -905.37 -3.52 -24.72 16 8 C 0.17 8.47 3.89 85.56 0.33 8.80 16 9 C -0.53 -30.07 7.77 25.60 0.20 -29.87 16 10 H 0.04 2.44 6.29 -2.91 -0.02 2.42 16 11 C 0.02 1.22 5.47 84.66 0.46 1.68 16 12 N -0.94 -59.44 13.96 21.45 0.30 -59.15 16 13 Si 0.93 45.98 27.37 68.60 1.88 47.86 16 14 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.26 -12.14 6.69 99.48 0.67 -11.47 16 17 C 0.10 4.29 4.85 85.56 0.42 4.70 16 18 C -0.03 -1.18 4.80 -19.90 -0.10 -1.27 16 19 C -0.16 -6.40 8.78 22.03 0.19 -6.20 16 20 C -0.11 -3.71 10.01 22.29 0.22 -3.49 16 21 C -0.13 -3.70 10.08 22.36 0.23 -3.47 16 22 C 0.07 2.12 7.28 39.03 0.28 2.40 16 23 N -0.59 -11.55 6.07 -187.62 -1.14 -12.69 16 24 H 0.43 5.10 8.96 -92.71 -0.83 4.27 16 25 C 0.06 1.18 11.81 83.00 0.98 2.16 16 26 C -0.22 -5.81 10.94 23.51 0.26 -5.56 16 27 C -0.11 -3.68 6.16 -20.20 -0.12 -3.80 16 28 H 0.04 1.29 6.77 -2.39 -0.02 1.28 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.84 6.46 -2.39 -0.02 1.82 16 33 H 0.04 1.60 6.64 -2.39 -0.02 1.58 16 34 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.06 1.83 7.56 -2.39 -0.02 1.81 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 1.30 6.72 -2.39 -0.02 1.28 16 39 H 0.02 0.89 4.74 -2.39 -0.01 0.88 16 40 H 0.07 2.34 7.70 -2.39 -0.02 2.32 16 41 H 0.02 0.96 5.99 -2.39 -0.01 0.94 16 42 H 0.02 0.85 6.03 -2.39 -0.01 0.84 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.08 2.80 7.70 -2.39 -0.02 2.78 16 45 H 0.02 1.07 6.12 -2.39 -0.01 1.05 16 46 H 0.09 4.33 8.01 -2.91 -0.02 4.30 16 47 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 48 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 49 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 50 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -71.11 384.72 2.95 -68.16 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.05 Total: 26.34 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 5.38 Total: -45.81 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -4.36 Total: -96.56 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -71.11 2.95 -68.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513737199.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.020 kcal (2) G-P(sol) polarization free energy of solvation -71.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds