Wall clock time and date at job start Tue Mar 31 2020 10:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99851 * 2 1 4 4 C 1.53003 * 109.47155 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47332 * 184.43540 * 4 3 2 6 6 N 1.46901 * 110.45591 * 53.06507 * 5 4 3 7 7 C 1.46901 * 111.00041 * 63.26325 * 6 5 4 8 8 C 1.53002 * 109.46770 * 176.42314 * 7 6 5 9 9 C 1.50696 * 109.46727 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00444 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00151 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00031 * 359.97438 * 11 9 8 13 13 C 1.46506 * 120.00432 * 180.02562 * 11 9 8 14 14 C 1.50693 * 109.47372 * 89.99804 * 13 11 9 15 15 H 1.08002 * 119.99767 * 359.97438 * 14 13 11 16 16 C 1.37880 * 120.00063 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00157 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99813 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47227 * 90.00703 * 18 16 14 20 20 H 1.48507 * 109.47102 * 210.00571 * 18 16 14 21 21 H 1.48501 * 109.47118 * 330.00265 * 18 16 14 22 22 C 1.54514 * 110.50934 * 290.31115 * 5 4 3 23 23 C 1.54475 * 104.06130 * 241.34999 * 22 5 4 24 24 O 1.44422 * 104.80289 * 23.98494 * 23 22 5 25 25 C 1.44425 * 105.27598 * 319.48338 * 24 23 22 26 26 H 1.09007 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46994 * 299.99587 * 1 2 3 28 28 H 1.08997 * 109.47278 * 60.00088 * 1 2 3 29 29 H 1.08999 * 109.46767 * 60.00606 * 3 2 1 30 30 H 1.08996 * 109.47371 * 300.00081 * 3 2 1 31 31 H 1.09001 * 109.46630 * 64.43755 * 4 3 2 32 32 H 1.08997 * 109.46976 * 304.43941 * 4 3 2 33 33 H 1.00905 * 110.99808 * 187.22012 * 6 5 4 34 34 H 1.08995 * 109.46713 * 296.42259 * 7 6 5 35 35 H 1.08994 * 109.46857 * 56.42215 * 7 6 5 36 36 H 1.08997 * 109.47027 * 299.99793 * 8 7 6 37 37 H 1.09004 * 109.46774 * 60.00356 * 8 7 6 38 38 H 1.09001 * 109.46874 * 89.99742 * 12 11 9 39 39 H 1.09000 * 109.47328 * 210.00586 * 12 11 9 40 40 H 1.09002 * 109.46629 * 330.00585 * 12 11 9 41 41 H 1.08999 * 109.46851 * 210.00066 * 13 11 9 42 42 H 1.09004 * 109.46674 * 329.99257 * 13 11 9 43 43 H 0.96994 * 119.99905 * 179.97438 * 17 16 14 44 44 H 1.08995 * 110.51188 * 0.02562 * 22 5 4 45 45 H 1.09000 * 110.50638 * 122.57490 * 22 5 4 46 46 H 1.09002 * 110.37118 * 142.81146 * 23 22 5 47 47 H 1.08997 * 110.37944 * 265.14753 * 23 22 5 48 48 H 1.09005 * 110.36932 * 281.68585 * 25 24 23 49 49 H 1.09001 * 110.37436 * 159.34497 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5781 0.1122 6 7 3.6032 3.2966 1.2675 7 6 3.9398 2.6131 2.5235 8 6 3.4239 3.4358 3.7058 9 6 3.7686 2.7343 4.9942 10 8 4.3675 1.6800 4.9693 11 7 3.4105 3.2780 6.1743 12 6 2.6866 4.5514 6.2045 13 6 3.7462 2.5964 7.4269 14 6 5.0955 3.0644 7.9076 15 1 5.6481 3.7961 7.3369 16 6 5.6251 2.5577 9.0755 17 7 6.8025 2.9665 9.4953 18 14 4.6696 1.2917 10.0621 19 1 5.0308 -0.0722 9.5990 20 1 5.0050 1.4304 11.5022 21 1 3.2135 1.5104 9.8698 22 6 3.9273 3.3793 -1.1888 23 6 5.3529 3.6679 -1.7089 24 8 6.1740 2.6306 -1.1297 25 6 5.6948 2.4773 0.2240 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8629 0.7138 -0.9262 32 1 3.8514 0.5768 0.8484 33 1 3.9178 4.2553 1.2819 34 1 3.4751 1.6273 2.5364 35 1 5.0218 2.5058 2.6000 36 1 3.8887 4.4216 3.6928 37 1 2.3419 3.5430 3.6292 38 1 1.6139 4.3602 6.1745 39 1 2.9346 5.0887 7.1199 40 1 2.9728 5.1525 5.3415 41 1 2.9922 2.8273 8.1795 42 1 3.7736 1.5198 7.2586 43 1 7.1749 2.6103 10.3170 44 1 3.3701 2.7829 -1.9112 45 1 3.4005 4.3096 -0.9762 46 1 5.3789 3.6092 -2.7970 47 1 5.6881 4.6491 -1.3730 48 1 6.0824 3.2760 0.8565 49 1 5.9834 1.5039 0.6208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562491564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:47 Heat of formation + Delta-G solvation = -121.720425 kcal Electronic energy + Delta-G solvation = -27330.369865 eV Core-core repulsion = 23485.893172 eV Total energy + Delta-G solvation = -3844.476693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47109 -39.10253 -37.92736 -36.29213 -34.93641 -33.05746 -32.47901 -30.49608 -30.08286 -28.51103 -27.54729 -26.37445 -25.88786 -23.89834 -23.15642 -22.71095 -21.42585 -19.71707 -18.41730 -17.06763 -16.96812 -16.76997 -16.38844 -16.26999 -15.96503 -15.67453 -15.29326 -15.19951 -14.95657 -14.50825 -14.27677 -14.06483 -13.52090 -13.32178 -13.11354 -12.75829 -12.55689 -12.37123 -12.27445 -12.15362 -11.99286 -11.84473 -11.75569 -11.55211 -11.40628 -11.27885 -11.16355 -11.06659 -10.92930 -10.73524 -10.52049 -10.15508 -10.05653 -9.74577 -9.56203 -9.04135 -8.63068 -8.60219 -7.72157 -6.10214 -4.09143 3.28479 3.32287 3.34514 3.36399 3.42227 3.61379 3.81381 4.19120 4.22252 4.38632 4.42836 4.67364 4.80824 4.88554 5.00253 5.00717 5.11490 5.14323 5.18477 5.19619 5.24925 5.30048 5.38098 5.39652 5.44219 5.47366 5.51585 5.53892 5.56641 5.70796 5.73814 5.81816 5.84410 5.94480 5.98755 6.11599 6.14331 6.46864 6.68127 6.78646 6.93189 7.05428 7.12349 7.31527 7.59692 8.22721 8.45348 8.90589 8.96590 9.50109 11.03200 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.003037 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.467314 B = 9218.546613 C =10113.718076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.069 3.931 4 C -0.100 4.100 5 C 0.092 3.908 6 N -0.674 5.674 7 C 0.067 3.933 8 C -0.136 4.136 9 C 0.507 3.493 10 O -0.542 6.542 11 N -0.599 5.599 12 C 0.084 3.916 13 C 0.215 3.785 14 C -0.529 4.529 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.148 4.148 23 C 0.041 3.959 24 O -0.371 6.371 25 C 0.019 3.981 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.342 0.658 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 3.404 -22.176 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.316 6.316 3 C -0.008 4.008 4 C -0.138 4.138 5 C 0.000 4.000 6 N -0.306 5.306 7 C -0.062 4.062 8 C -0.177 4.177 9 C 0.293 3.707 10 O -0.420 6.420 11 N -0.331 5.331 12 C -0.060 4.060 13 C 0.094 3.906 14 C -0.568 4.568 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.186 4.186 23 C -0.036 4.036 24 O -0.289 6.289 25 C -0.060 4.060 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.940 2.247 -22.165 25.277 hybrid contribution 0.222 0.177 0.942 0.984 sum -11.718 2.424 -21.223 24.364 Atomic orbital electron populations 1.22688 0.81204 1.02490 0.99847 1.87849 1.19573 1.28726 1.95483 1.22457 0.93262 0.84001 1.01039 1.21498 0.94027 0.94668 1.03576 1.22206 0.92286 0.94358 0.91147 1.60689 1.62686 1.05607 1.01634 1.21778 0.99617 0.98302 0.86474 1.21602 1.03226 1.00020 0.92819 1.20273 0.79644 0.85832 0.84942 1.90678 1.40781 1.23323 1.87196 1.47844 1.55691 1.22385 1.07141 1.21661 0.95216 0.86081 1.03056 1.19660 0.96599 0.93788 0.80515 1.21324 1.01746 1.25740 1.07975 0.90854 1.24867 0.94797 0.96208 0.97189 1.69895 1.16923 1.43757 1.23049 0.86834 0.80743 0.82603 0.79411 1.19867 1.21054 1.19069 1.23084 0.97906 1.01336 0.96252 1.23451 0.89200 0.91656 0.99274 1.89156 1.57548 1.56817 1.25411 1.24276 0.93816 1.03056 0.84831 0.89889 0.93998 0.94406 0.91420 0.93860 0.90567 0.90448 0.83976 0.89629 0.93650 0.89523 0.88807 0.93646 0.90635 0.92114 0.95273 0.94554 0.92543 0.89889 0.89448 0.89011 0.92272 0.91881 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.40 -4.75 10.70 -35.23 -0.38 -5.13 16 3 C 0.07 0.71 5.60 37.16 0.21 0.92 16 4 C -0.10 -1.05 3.91 -26.73 -0.10 -1.16 16 5 C 0.09 0.86 0.60 -130.03 -0.08 0.78 16 6 N -0.67 -6.34 5.02 -98.38 -0.49 -6.83 16 7 C 0.07 0.85 4.34 -3.82 -0.02 0.83 16 8 C -0.14 -1.81 4.48 -27.88 -0.12 -1.93 16 9 C 0.51 9.97 7.67 -10.99 -0.08 9.88 16 10 O -0.54 -13.06 15.56 5.55 0.09 -12.98 16 11 N -0.60 -12.12 2.86 -182.95 -0.52 -12.64 16 12 C 0.08 1.24 10.24 59.85 0.61 1.85 16 13 C 0.22 5.27 4.23 -5.19 -0.02 5.24 16 14 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 15 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 18 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 19 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 22 C -0.15 -1.09 6.03 -25.16 -0.15 -1.24 16 23 C 0.04 0.33 7.63 37.93 0.29 0.62 16 24 O -0.37 -4.28 11.65 -35.23 -0.41 -4.69 16 25 C 0.02 0.21 5.55 37.93 0.21 0.42 16 26 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.74 7.30 -51.93 -0.38 0.36 16 30 H 0.04 0.39 7.29 -51.93 -0.38 0.01 16 31 H 0.08 0.80 8.13 -51.93 -0.42 0.37 16 32 H 0.08 0.94 6.98 -51.93 -0.36 0.58 16 33 H 0.34 2.76 8.58 -39.29 -0.34 2.42 16 34 H 0.09 1.23 6.77 -51.93 -0.35 0.88 16 35 H 0.05 0.65 6.75 -51.93 -0.35 0.30 16 36 H 0.09 1.01 7.40 -51.93 -0.38 0.62 16 37 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.17 8.07 -51.93 -0.42 0.76 16 40 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 41 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 42 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.08 0.59 7.09 -51.93 -0.37 0.22 16 45 H 0.09 0.55 7.90 -51.93 -0.41 0.14 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.68 7.72 -51.93 -0.40 0.28 16 49 H 0.10 1.13 7.84 -51.93 -0.41 0.72 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -35.02 386.22 -6.96 -41.98 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.58 Total: 0.42 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 1.41 Total: 4.04 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.24 Total: -46.47 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.70 Total: -22.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.02 -6.96 -41.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562491564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.737 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds