Wall clock time and date at job start Tue Mar 31 2020 10:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99851 * 2 1 4 4 C 1.53003 * 109.47155 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47332 * 184.43540 * 4 3 2 6 6 N 1.46901 * 110.45591 * 53.06507 * 5 4 3 7 7 C 1.46901 * 111.00041 * 63.26325 * 6 5 4 8 8 C 1.53002 * 109.46770 * 176.42314 * 7 6 5 9 9 C 1.50696 * 109.46727 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00444 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00151 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00031 * 359.97438 * 11 9 8 13 13 C 1.46506 * 120.00432 * 180.02562 * 11 9 8 14 14 C 1.50693 * 109.47372 * 89.99804 * 13 11 9 15 15 H 1.08002 * 119.99767 * 359.97438 * 14 13 11 16 16 C 1.37880 * 120.00063 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00157 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99813 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47227 * 90.00703 * 18 16 14 20 20 H 1.48507 * 109.47102 * 210.00571 * 18 16 14 21 21 H 1.48501 * 109.47118 * 330.00265 * 18 16 14 22 22 C 1.54514 * 110.50934 * 290.31115 * 5 4 3 23 23 C 1.54475 * 104.06130 * 241.34999 * 22 5 4 24 24 O 1.44422 * 104.80289 * 23.98494 * 23 22 5 25 25 C 1.44425 * 105.27598 * 319.48338 * 24 23 22 26 26 H 1.09007 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46994 * 299.99587 * 1 2 3 28 28 H 1.08997 * 109.47278 * 60.00088 * 1 2 3 29 29 H 1.08999 * 109.46767 * 60.00606 * 3 2 1 30 30 H 1.08996 * 109.47371 * 300.00081 * 3 2 1 31 31 H 1.09001 * 109.46630 * 64.43755 * 4 3 2 32 32 H 1.08997 * 109.46976 * 304.43941 * 4 3 2 33 33 H 1.00905 * 110.99808 * 187.22012 * 6 5 4 34 34 H 1.08995 * 109.46713 * 296.42259 * 7 6 5 35 35 H 1.08994 * 109.46857 * 56.42215 * 7 6 5 36 36 H 1.08997 * 109.47027 * 299.99793 * 8 7 6 37 37 H 1.09004 * 109.46774 * 60.00356 * 8 7 6 38 38 H 1.09001 * 109.46874 * 89.99742 * 12 11 9 39 39 H 1.09000 * 109.47328 * 210.00586 * 12 11 9 40 40 H 1.09002 * 109.46629 * 330.00585 * 12 11 9 41 41 H 1.08999 * 109.46851 * 210.00066 * 13 11 9 42 42 H 1.09004 * 109.46674 * 329.99257 * 13 11 9 43 43 H 0.96994 * 119.99905 * 179.97438 * 17 16 14 44 44 H 1.08995 * 110.51188 * 0.02562 * 22 5 4 45 45 H 1.09000 * 110.50638 * 122.57490 * 22 5 4 46 46 H 1.09002 * 110.37118 * 142.81146 * 23 22 5 47 47 H 1.08997 * 110.37944 * 265.14753 * 23 22 5 48 48 H 1.09005 * 110.36932 * 281.68585 * 25 24 23 49 49 H 1.09001 * 110.37436 * 159.34497 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5781 0.1122 6 7 3.6032 3.2966 1.2675 7 6 3.9398 2.6131 2.5235 8 6 3.4239 3.4358 3.7058 9 6 3.7686 2.7343 4.9942 10 8 4.3675 1.6800 4.9693 11 7 3.4105 3.2780 6.1743 12 6 2.6866 4.5514 6.2045 13 6 3.7462 2.5964 7.4269 14 6 5.0955 3.0644 7.9076 15 1 5.6481 3.7961 7.3369 16 6 5.6251 2.5577 9.0755 17 7 6.8025 2.9665 9.4953 18 14 4.6696 1.2917 10.0621 19 1 5.0308 -0.0722 9.5990 20 1 5.0050 1.4304 11.5022 21 1 3.2135 1.5104 9.8698 22 6 3.9273 3.3793 -1.1888 23 6 5.3529 3.6679 -1.7089 24 8 6.1740 2.6306 -1.1297 25 6 5.6948 2.4773 0.2240 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8629 0.7138 -0.9262 32 1 3.8514 0.5768 0.8484 33 1 3.9178 4.2553 1.2819 34 1 3.4751 1.6273 2.5364 35 1 5.0218 2.5058 2.6000 36 1 3.8887 4.4216 3.6928 37 1 2.3419 3.5430 3.6292 38 1 1.6139 4.3602 6.1745 39 1 2.9346 5.0887 7.1199 40 1 2.9728 5.1525 5.3415 41 1 2.9922 2.8273 8.1795 42 1 3.7736 1.5198 7.2586 43 1 7.1749 2.6103 10.3170 44 1 3.3701 2.7829 -1.9112 45 1 3.4005 4.3096 -0.9762 46 1 5.3789 3.6092 -2.7970 47 1 5.6881 4.6491 -1.3730 48 1 6.0824 3.2760 0.8565 49 1 5.9834 1.5039 0.6208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562491564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:46 Heat of formation + Delta-G solvation = -149.273574 kcal Electronic energy + Delta-G solvation = -27331.564659 eV Core-core repulsion = 23485.893172 eV Total energy + Delta-G solvation = -3845.671487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30998 -40.60112 -38.73113 -37.23405 -36.57804 -34.74894 -33.92253 -31.38977 -31.15182 -29.99825 -28.55083 -27.30233 -27.09444 -25.23101 -23.96867 -23.89254 -22.69021 -20.56980 -19.87555 -19.16600 -17.97940 -17.87430 -17.30718 -17.15214 -17.06979 -16.82074 -16.66169 -16.26903 -15.96584 -15.73995 -15.42724 -15.08508 -14.71450 -14.69813 -14.26022 -13.95861 -13.81845 -13.66518 -13.64084 -13.27364 -13.25025 -12.98465 -12.77500 -12.66571 -12.57237 -12.40533 -12.22485 -12.19543 -12.02057 -11.96962 -11.78069 -11.76266 -11.61018 -10.85101 -10.83282 -10.66470 -10.52932 -9.51027 -9.38115 -8.36063 -6.41116 1.31206 1.35612 1.43829 1.81710 2.27218 2.29599 2.73418 2.90672 2.98592 3.27670 3.49616 3.65438 3.80672 3.91896 4.05206 4.15921 4.16279 4.22641 4.27081 4.36533 4.41103 4.53144 4.56227 4.59274 4.64570 4.65139 4.68055 4.72981 4.79926 4.83687 4.85237 4.87450 4.90061 4.93121 4.99312 5.01257 5.06968 5.16271 5.18907 5.44652 5.61917 5.69313 5.90689 6.22060 6.31506 6.38569 6.60162 6.71505 7.20097 7.43337 8.80912 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.003037 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.467314 B = 9218.546613 C =10113.718076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.427 6.427 3 C 0.073 3.927 4 C -0.098 4.098 5 C 0.097 3.903 6 N -0.655 5.655 7 C 0.078 3.922 8 C -0.118 4.118 9 C 0.494 3.506 10 O -0.600 6.600 11 N -0.609 5.609 12 C 0.077 3.923 13 C 0.222 3.778 14 C -0.537 4.537 15 H 0.028 0.972 16 C 0.010 3.990 17 N -0.946 5.946 18 Si 0.948 3.052 19 H -0.278 1.278 20 H -0.274 1.274 21 H -0.237 1.237 22 C -0.137 4.137 23 C 0.035 3.965 24 O -0.397 6.397 25 C 0.018 3.982 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.355 0.645 34 H 0.064 0.936 35 H 0.020 0.980 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.016 0.984 43 H 0.269 0.731 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 4.808 -23.487 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.347 6.347 3 C -0.003 4.003 4 C -0.136 4.136 5 C 0.005 3.995 6 N -0.288 5.288 7 C -0.052 4.052 8 C -0.158 4.158 9 C 0.283 3.717 10 O -0.481 6.481 11 N -0.340 5.340 12 C -0.065 4.065 13 C 0.100 3.900 14 C -0.575 4.575 15 H 0.047 0.953 16 C -0.188 4.188 17 N -0.586 5.586 18 Si 0.771 3.229 19 H -0.204 1.204 20 H -0.199 1.199 21 H -0.160 1.160 22 C -0.175 4.175 23 C -0.041 4.041 24 O -0.315 6.315 25 C -0.061 4.061 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.176 0.824 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.034 0.966 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.066 3.717 -23.503 28.164 hybrid contribution 1.250 -0.213 1.269 1.794 sum -13.816 3.504 -22.234 26.411 Atomic orbital electron populations 1.22864 0.79650 1.03443 1.00809 1.87815 1.21435 1.29736 1.95671 1.22442 0.92530 0.83641 1.01640 1.21463 0.94813 0.95070 1.02272 1.22159 0.90928 0.94215 0.92214 1.60637 1.62105 1.06010 1.00060 1.21519 0.97818 0.97806 0.88033 1.21548 1.05374 1.00007 0.88866 1.21432 0.78287 0.85374 0.86633 1.90649 1.43264 1.26064 1.88143 1.47990 1.56021 1.24051 1.05928 1.21992 0.96601 0.83839 1.04075 1.19317 0.94671 0.92988 0.83068 1.21577 1.03541 1.24742 1.07656 0.95315 1.25870 0.95844 0.98526 0.98585 1.70046 1.18979 1.45598 1.23960 0.85709 0.80700 0.78742 0.77761 1.20362 1.19901 1.16018 1.23053 0.97815 1.01918 0.94688 1.23701 0.89006 0.91240 1.00185 1.89132 1.58701 1.58194 1.25484 1.24226 0.95088 1.01914 0.84882 0.89109 0.93721 0.92662 0.91907 0.91877 0.90755 0.93163 0.82435 0.91754 0.96169 0.86886 0.85499 0.90191 0.91839 0.88779 0.93216 0.96598 0.92255 0.89107 0.87317 0.87393 0.91140 0.92080 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.43 -9.88 10.70 -148.98 -1.59 -11.47 16 3 C 0.07 1.41 5.60 71.98 0.40 1.82 16 4 C -0.10 -2.06 3.91 30.59 0.12 -1.94 16 5 C 0.10 1.70 0.60 4.54 0.00 1.70 16 6 N -0.66 -10.95 5.02 -465.17 -2.33 -13.28 16 7 C 0.08 1.94 4.34 86.30 0.37 2.32 16 8 C -0.12 -2.87 4.48 29.85 0.13 -2.73 16 9 C 0.49 19.31 7.67 87.66 0.67 19.98 16 10 O -0.60 -30.03 15.56 -3.04 -0.05 -30.08 16 11 N -0.61 -24.08 2.86 -851.11 -2.43 -26.51 16 12 C 0.08 2.04 10.24 127.77 1.31 3.35 16 13 C 0.22 10.87 4.23 85.63 0.36 11.23 16 14 C -0.54 -31.81 9.94 25.60 0.25 -31.56 16 15 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 16 C 0.01 0.58 5.47 84.66 0.46 1.04 16 17 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 18 Si 0.95 44.89 27.47 68.60 1.88 46.78 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 22 C -0.14 -1.62 6.03 31.61 0.19 -1.43 16 23 C 0.03 0.48 7.63 72.48 0.55 1.03 16 24 O -0.40 -8.98 11.65 -148.98 -1.74 -10.71 16 25 C 0.02 0.39 5.55 72.48 0.40 0.80 16 26 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 1.26 7.30 -2.39 -0.02 1.24 16 30 H 0.06 0.96 7.29 -2.39 -0.02 0.94 16 31 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.05 1.31 6.98 -2.39 -0.02 1.30 16 33 H 0.36 4.55 8.58 -89.69 -0.77 3.78 16 34 H 0.06 1.91 6.77 -2.39 -0.02 1.89 16 35 H 0.02 0.60 6.75 -2.39 -0.02 0.59 16 36 H 0.11 2.21 7.40 -2.39 -0.02 2.19 16 37 H 0.13 2.33 8.11 -2.38 -0.02 2.31 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.85 8.07 -2.39 -0.02 1.83 16 40 H 0.09 1.85 6.44 -2.39 -0.02 1.84 16 41 H 0.05 2.22 7.13 -2.39 -0.02 2.21 16 42 H 0.02 0.84 6.85 -2.38 -0.02 0.83 16 43 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 44 H 0.09 0.99 7.09 -2.39 -0.02 0.97 16 45 H 0.11 0.87 7.90 -2.39 -0.02 0.86 16 46 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 1.34 7.72 -2.38 -0.02 1.32 16 49 H 0.08 1.96 7.84 -2.39 -0.02 1.94 16 Total: -1.00 -81.68 386.22 0.63 -81.05 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.10 Total: 16.92 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 6.49 Total: 7.30 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -4.47 Total: -99.78 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -3.38 Total: -52.26 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -81.68 0.63 -81.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562491564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.227 kcal (2) G-P(sol) polarization free energy of solvation -81.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds