Wall clock time and date at job start Tue Mar 31 2020 10:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00014 * 2 1 4 4 C 1.53008 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46808 * 175.56490 * 4 3 2 6 6 N 1.46905 * 110.45851 * 55.25290 * 5 4 3 7 7 C 1.46903 * 110.99717 * 59.37366 * 6 5 4 8 8 C 1.53001 * 109.46805 * 175.39077 * 7 6 5 9 9 C 1.50699 * 109.47050 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00169 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00111 * 179.72551 * 9 8 7 12 12 C 1.46495 * 119.99651 * 0.27542 * 11 9 8 13 13 C 1.46496 * 119.99812 * 180.27599 * 11 9 8 14 14 C 1.50706 * 109.47117 * 90.00134 * 13 11 9 15 15 H 1.07999 * 119.99877 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99771 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00159 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99670 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47164 * 59.99985 * 18 16 14 20 20 H 1.48501 * 109.47169 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47277 * 299.99650 * 18 16 14 22 22 C 1.54512 * 110.51163 * 177.85278 * 5 4 3 23 23 C 1.54486 * 104.06168 * 118.78233 * 22 5 4 24 24 O 1.44426 * 104.79972 * 23.98493 * 23 22 5 25 25 C 1.44782 * 105.29467 * 319.44761 * 24 23 22 26 26 H 1.09004 * 109.46408 * 299.99936 * 1 2 3 27 27 H 1.08993 * 109.46758 * 59.99884 * 1 2 3 28 28 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47355 * 60.00154 * 3 2 1 30 30 H 1.09001 * 109.47120 * 299.99863 * 3 2 1 31 31 H 1.08994 * 109.46784 * 55.57024 * 4 3 2 32 32 H 1.08989 * 109.46960 * 295.56792 * 4 3 2 33 33 H 1.00892 * 111.00452 * 183.32772 * 6 5 4 34 34 H 1.08991 * 109.47265 * 55.39028 * 7 6 5 35 35 H 1.09000 * 109.47314 * 295.38835 * 7 6 5 36 36 H 1.09004 * 109.47448 * 59.99985 * 8 7 6 37 37 H 1.09000 * 109.46987 * 299.99958 * 8 7 6 38 38 H 1.09004 * 109.47364 * 90.00319 * 12 11 9 39 39 H 1.09003 * 109.47163 * 210.00020 * 12 11 9 40 40 H 1.09001 * 109.47486 * 329.99973 * 12 11 9 41 41 H 1.09003 * 109.46841 * 209.99337 * 13 11 9 42 42 H 1.08997 * 109.47640 * 329.99896 * 13 11 9 43 43 H 0.97004 * 119.99843 * 179.97438 * 17 16 14 44 44 H 1.08995 * 110.51628 * 237.43198 * 22 5 4 45 45 H 1.09004 * 110.50455 * 0.02562 * 22 5 4 46 46 H 1.08993 * 110.36961 * 142.81036 * 23 22 5 47 47 H 1.09003 * 110.37136 * 265.04161 * 23 22 5 48 48 H 1.09000 * 110.43100 * 281.78033 * 25 24 23 49 49 H 1.09009 * 110.48687 * 159.32737 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 6 4.1574 2.5780 -0.1122 6 7 3.6568 3.4509 0.9581 7 6 3.9758 2.8977 2.2810 8 6 3.5423 3.8864 3.3652 9 6 3.8690 3.3187 4.7224 10 8 4.3970 2.2306 4.8136 11 7 3.5799 4.0226 5.8348 12 6 2.9426 5.3371 5.7247 13 6 3.9030 3.4733 7.1539 14 6 5.2932 3.9005 7.5492 15 1 5.8776 4.5189 6.8841 16 6 5.8187 3.5017 8.7599 17 7 5.1068 2.7491 9.5699 18 14 7.5421 4.0306 9.2495 19 1 7.6093 5.5132 9.3000 20 1 7.8696 3.4739 10.5866 21 1 8.5177 3.5246 8.2508 22 6 5.6991 2.4885 -0.0610 23 6 6.1538 3.0631 -1.4210 24 8 5.0668 3.9151 -1.8435 25 6 3.8599 3.1944 -1.4971 26 1 -0.3632 0.5139 0.8901 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8515 0.5768 -0.8485 32 1 3.8631 0.7136 0.9261 33 1 4.0198 4.3872 0.8606 34 1 5.0497 2.7264 2.3539 35 1 3.4473 1.9542 2.4174 36 1 2.4683 4.0577 3.2924 37 1 4.0708 4.8299 3.2288 38 1 1.8592 5.2180 5.7387 39 1 3.2503 5.9615 6.5635 40 1 3.2441 5.8100 4.7900 41 1 3.1868 3.8441 7.8872 42 1 3.8542 2.3851 7.1162 43 1 5.4767 2.4682 10.4215 44 1 6.0898 3.0918 0.7584 45 1 6.0181 1.4514 0.0434 46 1 7.0674 3.6453 -1.3005 47 1 6.3093 2.2587 -2.1399 48 1 3.6625 2.4095 -2.2272 49 1 3.0125 3.8772 -1.4343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562491566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:49 Heat of formation + Delta-G solvation = -127.153244 kcal Electronic energy + Delta-G solvation = -27296.477208 eV Core-core repulsion = 23451.764930 eV Total energy + Delta-G solvation = -3844.712278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43671 -38.97236 -37.93481 -36.25270 -34.80146 -32.97791 -32.49112 -30.66726 -29.81028 -28.19304 -27.29810 -26.33336 -25.69411 -23.91190 -23.49987 -22.41156 -21.72711 -19.67333 -18.36913 -17.03617 -16.69699 -16.56072 -16.45111 -16.04347 -15.93309 -15.53177 -15.26559 -15.20189 -15.00458 -14.46258 -14.32354 -13.98989 -13.71403 -13.24453 -13.00700 -12.76685 -12.51955 -12.23772 -12.13255 -11.91454 -11.83460 -11.79298 -11.69613 -11.57094 -11.27215 -11.18052 -11.11164 -11.02592 -10.90307 -10.68899 -10.54809 -10.16749 -10.03713 -9.75576 -9.65196 -8.90441 -8.60366 -8.44129 -7.64186 -6.04953 -4.09974 3.30649 3.35182 3.36489 3.44962 3.46420 3.70528 3.75441 4.15082 4.34219 4.44733 4.51034 4.74657 4.80342 4.89043 5.00954 5.05265 5.15059 5.19670 5.22142 5.23038 5.28975 5.30735 5.36772 5.40123 5.47338 5.48988 5.52303 5.55317 5.58877 5.73744 5.77639 5.84008 5.91792 5.94732 6.07131 6.17376 6.21517 6.47075 6.84492 7.03843 7.05091 7.20872 7.44098 7.53822 7.91246 8.22848 8.42160 8.89189 9.09473 9.55088 11.03090 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.003014 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.130801 B = 9288.252775 C =10268.182711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.398 6.398 3 C 0.069 3.931 4 C -0.103 4.103 5 C 0.092 3.908 6 N -0.675 5.675 7 C 0.069 3.931 8 C -0.138 4.138 9 C 0.504 3.496 10 O -0.544 6.544 11 N -0.603 5.603 12 C 0.084 3.916 13 C 0.245 3.755 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.186 4.186 23 C 0.046 3.954 24 O -0.376 6.376 25 C 0.052 3.948 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.345 0.655 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.031 0.969 42 H 0.043 0.957 43 H 0.264 0.736 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 1.680 -22.662 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.317 6.317 3 C -0.008 4.008 4 C -0.141 4.141 5 C -0.001 4.001 6 N -0.306 5.306 7 C -0.059 4.059 8 C -0.178 4.178 9 C 0.290 3.710 10 O -0.422 6.422 11 N -0.335 5.335 12 C -0.060 4.060 13 C 0.126 3.874 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.226 4.226 23 C -0.031 4.031 24 O -0.295 6.295 25 C -0.025 4.025 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.868 0.800 -22.504 23.542 hybrid contribution 1.702 0.623 0.659 1.929 sum -5.166 1.424 -21.846 22.493 Atomic orbital electron populations 1.22699 0.81092 1.02529 0.99955 1.87840 1.19682 1.28658 1.95495 1.22454 0.93215 0.84024 1.01071 1.21551 0.94147 0.94611 1.03805 1.22200 0.91860 0.93375 0.92617 1.60680 1.62928 1.05341 1.01692 1.21760 1.00004 0.98235 0.85928 1.21628 1.03380 0.99785 0.93051 1.20255 0.79398 0.85635 0.85679 1.90671 1.43048 1.21430 1.87067 1.48159 1.58985 1.18017 1.08379 1.21633 0.96493 0.85683 1.02214 1.19274 0.95694 0.95786 0.76661 1.21396 1.00255 1.32273 1.02685 0.92596 1.24940 0.97889 0.94983 0.96306 1.69924 1.37325 1.35668 1.10462 0.86558 0.84486 0.78727 0.77635 1.20246 1.21134 1.20211 1.23726 0.96746 1.03210 0.98897 1.23373 0.91284 0.94211 0.94191 1.89204 1.15158 1.42298 1.82830 1.23650 0.88980 0.96634 0.93215 0.93926 0.94320 0.89853 0.91704 0.93657 0.90689 0.90208 0.83645 0.93735 0.89819 0.88931 0.89735 0.93755 0.90862 0.92418 0.95062 0.93866 0.92643 0.89961 0.89737 0.89098 0.92184 0.91459 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.40 -4.68 10.70 -35.23 -0.38 -5.06 16 3 C 0.07 0.71 5.56 37.16 0.21 0.92 16 4 C -0.10 -1.04 3.85 -26.73 -0.10 -1.15 16 5 C 0.09 0.87 0.59 -130.03 -0.08 0.79 16 6 N -0.68 -6.89 5.30 -98.38 -0.52 -7.41 16 7 C 0.07 0.92 4.15 -3.82 -0.02 0.90 16 8 C -0.14 -1.93 4.46 -27.88 -0.12 -2.06 16 9 C 0.50 10.30 7.67 -10.98 -0.08 10.21 16 10 O -0.54 -13.55 15.56 5.55 0.09 -13.46 16 11 N -0.60 -12.77 2.86 -182.95 -0.52 -13.29 16 12 C 0.08 1.31 10.25 59.84 0.61 1.93 16 13 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 14 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 18 Si 0.90 21.94 29.54 -169.99 -5.02 16.91 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.19 -1.76 5.81 -25.16 -0.15 -1.91 16 23 C 0.05 0.40 7.63 37.94 0.29 0.69 16 24 O -0.38 -3.93 11.66 -35.23 -0.41 -4.34 16 25 C 0.05 0.46 5.98 37.93 0.23 0.68 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.73 7.34 -51.93 -0.38 0.35 16 30 H 0.05 0.41 7.39 -51.93 -0.38 0.02 16 31 H 0.07 0.69 8.04 -51.93 -0.42 0.28 16 32 H 0.08 0.95 6.86 -51.94 -0.36 0.60 16 33 H 0.34 3.34 8.66 -39.30 -0.34 3.00 16 34 H 0.04 0.66 6.41 -51.93 -0.33 0.33 16 35 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 36 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 37 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 40 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 41 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 42 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.08 0.87 6.73 -51.93 -0.35 0.52 16 45 H 0.08 0.78 7.73 -51.93 -0.40 0.37 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.53 7.80 -51.93 -0.40 0.12 16 49 H 0.10 0.84 8.06 -51.92 -0.42 0.42 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -33.80 389.14 -7.28 -41.09 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.57 Total: 0.60 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 1.45 Total: 5.13 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.31 Total: -46.73 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.70 Total: -22.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.80 -7.28 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562491566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.068 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds