Wall clock time and date at job start Tue Mar 31 2020 11:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 120.00608 * 2 1 4 4 C 1.38214 * 120.00744 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99478 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00364 * 359.70152 * 5 4 3 7 7 C 1.38214 * 119.99843 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00027 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.47245 * 30.28974 * 8 7 2 10 10 N 1.46897 * 109.47507 * 150.29385 * 8 7 2 11 11 C 1.46903 * 111.00016 * 231.87325 * 10 8 7 12 12 C 1.52997 * 109.47164 * 175.86160 * 11 10 8 13 13 H 1.09003 * 109.47330 * 54.99825 * 12 11 10 14 14 C 1.47200 * 109.47090 * 295.00063 * 12 11 10 15 15 N 6.03418 * 116.52676 * 224.17407 * 2 1 3 16 16 C 1.52995 * 109.47076 * 174.99955 * 12 11 10 17 17 C 1.50704 * 109.47330 * 185.00392 * 16 12 11 18 18 H 1.08004 * 119.99517 * 359.97438 * 17 16 12 19 19 C 1.37870 * 120.00114 * 179.72395 * 17 16 12 20 20 N 1.31516 * 120.00222 * 0.27705 * 19 17 16 21 21 Si 1.86800 * 120.00009 * 180.27034 * 19 17 16 22 22 H 1.48502 * 109.47279 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47360 * 120.00112 * 21 19 17 24 24 H 1.48496 * 109.47416 * 240.00176 * 21 19 17 25 25 C 1.53006 * 109.46900 * 270.29177 * 8 7 2 26 26 C 1.53001 * 109.46793 * 304.98025 * 25 8 7 27 27 C 1.52997 * 109.47193 * 64.97718 * 25 8 7 28 28 C 1.53001 * 109.47228 * 184.97902 * 25 8 7 29 29 H 1.08998 * 109.46804 * 271.19084 * 1 2 3 30 30 H 1.09005 * 109.46538 * 31.18638 * 1 2 3 31 31 H 1.08997 * 109.46971 * 151.18692 * 1 2 3 32 32 H 1.08009 * 119.99788 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.00171 * 179.97438 * 4 3 2 34 34 H 1.07997 * 119.99847 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.00682 * 180.29765 * 6 5 4 36 36 H 1.00895 * 111.00146 * 107.91659 * 10 8 7 37 37 H 1.09006 * 109.46948 * 55.85906 * 11 10 8 38 38 H 1.09003 * 109.46774 * 295.86215 * 11 10 8 39 39 H 1.08996 * 109.47668 * 64.99748 * 16 12 11 40 40 H 1.09001 * 109.47326 * 304.99734 * 16 12 11 41 41 H 0.97003 * 120.00112 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47582 * 60.00213 * 26 25 8 43 43 H 1.09006 * 109.46652 * 180.02562 * 26 25 8 44 44 H 1.09001 * 109.47141 * 299.99732 * 26 25 8 45 45 H 1.08999 * 109.47236 * 56.87760 * 27 25 8 46 46 H 1.08997 * 109.47700 * 176.87982 * 27 25 8 47 47 H 1.09009 * 109.47330 * 296.87897 * 27 25 8 48 48 H 1.08994 * 109.46866 * 61.91479 * 28 25 8 49 49 H 1.08995 * 109.46770 * 181.91553 * 28 25 8 50 50 H 1.09003 * 109.46591 * 301.91375 * 28 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0062 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 1 0.4946 -2.3731 -0.5182 10 7 2.2416 -3.5278 -0.6852 11 6 1.4531 -4.1970 -1.7285 12 6 2.3436 -5.1830 -2.4873 13 1 2.8051 -5.8734 -1.7812 14 6 3.3930 -4.4428 -3.2068 15 7 4.2020 -3.8723 -3.7622 16 6 1.4958 -5.9691 -3.4892 17 6 2.3465 -7.0238 -4.1487 18 1 3.3880 -7.1231 -3.8804 19 6 1.7941 -7.8653 -5.0908 20 7 0.5260 -7.7441 -5.4180 21 14 2.8467 -9.1775 -5.9028 22 1 4.2288 -9.1068 -5.3642 23 1 2.2734 -10.5177 -5.6191 24 1 2.8747 -8.9518 -7.3703 25 6 1.1826 -2.9397 1.4431 26 6 2.5074 -3.0005 2.2060 27 6 0.2500 -1.9333 2.1200 28 6 0.5285 -4.3229 1.4457 29 1 -0.3633 0.0214 1.0274 30 1 -0.3632 0.8792 -0.5322 31 1 -0.3633 -0.9004 -0.4953 32 1 1.6584 2.1327 -0.0004 33 1 4.1205 2.1326 0.0001 34 1 5.3517 -0.0001 0.0005 35 1 4.1205 -2.1324 0.0111 36 1 2.6129 -4.1968 -0.0275 37 1 1.0621 -3.4525 -2.4221 38 1 0.6246 -4.7356 -1.2684 39 1 1.1062 -5.2899 -4.2474 40 1 0.6658 -6.4458 -2.9676 41 1 0.1373 -8.3364 -6.0805 42 1 2.9734 -2.0152 2.2042 43 1 2.3209 -3.3128 3.2336 44 1 3.1718 -3.7175 1.7238 45 1 -0.6722 -1.8488 1.5452 46 1 0.0190 -2.2738 3.1294 47 1 0.7388 -0.9601 2.1679 48 1 1.2071 -5.0464 0.9940 49 1 0.3110 -4.6199 2.4716 50 1 -0.3984 -4.2874 0.8733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566112734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:51 Heat of formation + Delta-G solvation = 29.162402 kcal Electronic energy + Delta-G solvation = -26866.192732 eV Core-core repulsion = 23471.400824 eV Total energy + Delta-G solvation = -3394.791908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48713 -37.95467 -36.55992 -34.31945 -33.25390 -32.91702 -31.71068 -30.53777 -27.81224 -27.22442 -27.05916 -26.43010 -24.81456 -22.81578 -21.74449 -21.51844 -21.02442 -18.77636 -17.13936 -16.49353 -16.34827 -15.75280 -15.68074 -15.01889 -14.64012 -14.42774 -14.27113 -14.02761 -13.78125 -13.39252 -13.14153 -13.06067 -12.77986 -12.68972 -12.46637 -12.33508 -12.22727 -12.17076 -11.95185 -11.81886 -11.73383 -11.51321 -11.29060 -11.18750 -11.07721 -11.03029 -10.90247 -10.70097 -10.57846 -10.54729 -10.39406 -10.21784 -9.53964 -9.21077 -8.63347 -8.48403 -8.45970 -8.25529 -6.09730 -4.12631 1.43232 1.51970 3.28263 3.36697 3.41325 3.78352 3.82560 3.88699 4.20460 4.42131 4.61000 4.64772 4.74357 4.87670 4.93726 4.96111 5.11949 5.16862 5.22050 5.28652 5.32121 5.37669 5.50975 5.51426 5.56221 5.58735 5.66222 5.68147 5.73239 5.75052 5.80422 5.85011 5.87164 5.93558 6.01807 6.08586 6.12615 6.20530 6.22069 6.24650 6.39528 6.50307 6.56103 6.64186 6.75232 7.10318 7.19885 7.42294 7.50239 7.54584 7.85877 8.23449 8.63243 8.92473 9.52964 11.01193 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.003341 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.212922 B = 8379.672167 C = 9049.688901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 C -0.127 4.127 4 C -0.125 4.125 5 C -0.133 4.133 6 C -0.080 4.080 7 C -0.060 4.060 8 C 0.132 3.868 9 H 0.082 0.918 10 N -0.686 5.686 11 C 0.066 3.934 12 C 0.011 3.989 13 H 0.098 0.902 14 C 0.255 3.745 15 N -0.478 5.478 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.081 4.081 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.148 4.148 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.343 0.657 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.037 0.963 41 H 0.262 0.738 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 13.884 18.434 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.098 4.098 7 C -0.061 4.061 8 C 0.022 3.978 9 H 0.100 0.900 10 N -0.318 5.318 11 C -0.064 4.064 12 C -0.011 4.011 13 H 0.115 0.885 14 C -0.062 4.062 15 N -0.155 5.155 16 C -0.007 4.007 17 C -0.563 4.563 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.082 4.082 26 C -0.201 4.201 27 C -0.203 4.203 28 C -0.206 4.206 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.612 15.090 17.037 22.767 hybrid contribution -0.278 -1.512 0.060 1.539 sum -0.890 13.577 17.097 21.850 Atomic orbital electron populations 1.21148 0.91802 1.02646 1.02456 1.19671 0.95700 0.92667 1.00576 1.20888 0.94203 0.97128 1.02318 1.21038 0.94300 0.97828 1.01112 1.21144 0.99680 0.92772 1.01533 1.21003 0.93762 0.97943 0.97098 1.19627 0.93811 0.93440 0.99184 1.20548 0.95060 0.89665 0.92556 0.90028 1.60531 1.37270 1.17590 1.16419 1.22182 0.94523 0.96363 0.93291 1.19185 0.91100 0.93917 0.96921 0.88462 1.28794 0.93262 0.91929 0.92196 1.80942 1.11860 1.11565 1.11154 1.19164 0.94518 0.94265 0.92769 1.21182 0.96523 1.15975 1.22599 0.92464 1.24947 0.94937 0.97549 0.96532 1.69949 1.11844 1.38628 1.32626 0.86550 0.80723 0.81509 0.79389 1.19668 1.20881 1.20972 1.21001 0.96245 0.95840 0.95091 1.21952 0.96303 1.02478 0.99398 1.22143 0.98975 0.99142 0.99997 1.21978 1.00840 0.95655 1.02108 0.90579 0.92111 0.91237 0.86696 0.86777 0.86668 0.85490 0.83633 0.90629 0.93085 0.95625 0.94499 0.92880 0.91933 0.92917 0.92288 0.92304 0.92947 0.91832 0.92138 0.92325 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 7.99 36.01 0.29 -0.82 16 2 C -0.09 -0.95 4.91 -104.62 -0.51 -1.46 16 3 C -0.13 -1.38 9.71 -39.58 -0.38 -1.77 16 4 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 5 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 6 C -0.08 -1.01 7.47 -39.58 -0.30 -1.30 16 7 C -0.06 -0.71 3.89 -104.62 -0.41 -1.12 16 8 C 0.13 1.43 1.51 -68.86 -0.10 1.33 16 9 H 0.08 0.92 5.32 -51.93 -0.28 0.64 16 10 N -0.69 -8.51 4.57 -107.95 -0.49 -9.00 16 11 C 0.07 0.95 4.49 -3.82 -0.02 0.93 16 12 C 0.01 0.20 2.39 -93.41 -0.22 -0.03 16 13 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 14 C 0.26 5.34 13.67 -20.79 -0.28 5.06 16 15 N -0.48 -10.98 18.53 42.12 0.78 -10.20 16 16 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 17 C -0.52 -13.91 8.60 -34.44 -0.30 -14.21 16 18 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C -0.08 -0.72 0.54 -154.51 -0.08 -0.80 16 26 C -0.14 -1.29 7.57 37.16 0.28 -1.01 16 27 C -0.15 -1.18 6.53 37.16 0.24 -0.94 16 28 C -0.15 -1.31 7.49 37.16 0.28 -1.03 16 29 H 0.08 0.58 5.66 -51.93 -0.29 0.28 16 30 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.07 0.64 5.77 -51.93 -0.30 0.34 16 32 H 0.11 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.64 7.38 -52.49 -0.39 1.26 16 36 H 0.34 3.85 5.36 -39.29 -0.21 3.64 16 37 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 38 H 0.05 0.66 7.43 -51.93 -0.39 0.27 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.06 0.61 6.14 -51.93 -0.32 0.30 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.53 6.69 -51.93 -0.35 0.19 16 45 H 0.06 0.45 6.81 -51.93 -0.35 0.10 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.55 5.60 -51.92 -0.29 0.26 16 48 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -30.28 385.87 -8.82 -39.10 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.10 Total: 1.44 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.54 Total: -18.72 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 1.02 Total: -43.93 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.28 -8.82 -39.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566112734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.267 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds