Wall clock time and date at job start Tue Mar 31 2020 11:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 119.99954 * 2 1 4 4 C 1.38210 * 119.99875 * 180.23249 * 3 2 1 5 5 C 1.38262 * 119.99842 * 359.80949 * 4 3 2 6 6 C 1.38209 * 120.00323 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99973 * 179.78875 * 2 1 3 8 8 C 1.50696 * 119.99960 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.47432 * 336.73677 * 8 7 2 10 10 N 1.46902 * 109.47228 * 216.73570 * 8 7 2 11 11 C 1.46901 * 111.00038 * 137.33880 * 10 8 7 12 12 C 1.53006 * 109.47240 * 181.02446 * 11 10 8 13 13 H 1.09001 * 109.46269 * 54.99995 * 12 11 10 14 14 C 1.47195 * 109.47099 * 295.00505 * 12 11 10 15 15 N 7.26483 * 103.17661 * 171.63208 * 2 1 3 16 16 C 1.52998 * 109.47203 * 174.99942 * 12 11 10 17 17 C 1.50700 * 109.47195 * 185.00540 * 16 12 11 18 18 H 1.08001 * 119.99679 * 359.97438 * 17 16 12 19 19 C 1.37872 * 120.00034 * 179.73079 * 17 16 12 20 20 N 1.31512 * 120.00089 * 0.26649 * 19 17 16 21 21 Si 1.86800 * 119.99972 * 180.27257 * 19 17 16 22 22 H 1.48506 * 109.47148 * 89.99514 * 21 19 17 23 23 H 1.48497 * 109.47025 * 209.99620 * 21 19 17 24 24 H 1.48498 * 109.47108 * 329.99445 * 21 19 17 25 25 C 1.52998 * 109.47468 * 96.73717 * 8 7 2 26 26 C 1.52995 * 109.47751 * 175.97411 * 25 8 7 27 27 C 1.53007 * 109.46880 * 295.97515 * 25 8 7 28 28 C 1.53000 * 109.47168 * 55.96931 * 25 8 7 29 29 H 1.09002 * 109.47283 * 274.75902 * 1 2 3 30 30 H 1.09006 * 109.46853 * 34.76024 * 1 2 3 31 31 H 1.08999 * 109.47060 * 154.75818 * 1 2 3 32 32 H 1.08001 * 120.00106 * 0.06006 * 3 2 1 33 33 H 1.07997 * 120.00169 * 179.83842 * 4 3 2 34 34 H 1.07999 * 119.99917 * 180.02562 * 5 4 3 35 35 H 1.07993 * 120.00099 * 180.02562 * 6 5 4 36 36 H 1.00904 * 110.99898 * 261.29378 * 10 8 7 37 37 H 1.09001 * 109.47172 * 61.03078 * 11 10 8 38 38 H 1.08995 * 109.47028 * 301.02685 * 11 10 8 39 39 H 1.09000 * 109.46780 * 65.00277 * 16 12 11 40 40 H 1.09006 * 109.46861 * 305.00551 * 16 12 11 41 41 H 0.97000 * 119.99955 * 180.02562 * 20 19 17 42 42 H 1.09009 * 109.47166 * 62.41024 * 26 25 8 43 43 H 1.09004 * 109.47909 * 182.41156 * 26 25 8 44 44 H 1.08998 * 109.47313 * 302.41647 * 26 25 8 45 45 H 1.08994 * 109.46996 * 54.78368 * 27 25 8 46 46 H 1.08997 * 109.47161 * 174.78108 * 27 25 8 47 47 H 1.09003 * 109.46835 * 294.77938 * 27 25 8 48 48 H 1.09006 * 109.47008 * 61.07167 * 28 25 8 49 49 H 1.08994 * 109.47202 * 181.06720 * 28 25 8 50 50 H 1.08992 * 109.47517 * 301.07043 * 28 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1969 0.0044 8 6 1.4446 -2.5020 0.0098 9 1 0.4454 -2.3430 0.4154 10 7 2.1613 -3.4778 0.8418 11 6 1.2282 -4.2362 1.6857 12 6 2.0121 -5.2222 2.5542 13 1 2.7710 -4.6831 3.1211 14 6 2.6619 -6.2245 1.6941 15 7 3.1631 -6.9983 1.0294 16 6 1.0552 -5.9230 3.5207 17 6 1.8425 -6.8021 4.4579 18 1 2.9178 -6.8559 4.3724 19 6 1.1906 -7.5337 5.4278 20 7 -0.1188 -7.4685 5.5316 21 14 2.1672 -8.6176 6.5944 22 1 2.5502 -7.8328 7.7956 23 1 1.3359 -9.7774 7.0052 24 1 3.3919 -9.1040 5.9098 25 6 1.3355 -3.0339 -1.4206 26 6 0.6594 -4.4063 -1.4043 27 6 0.5029 -2.0652 -2.2628 28 6 2.7352 -3.1620 -2.0252 29 1 -0.3634 0.0853 1.0241 30 1 -0.3633 0.8443 -0.5860 31 1 -0.3633 -0.9295 -0.4382 32 1 1.6583 2.1327 0.0010 33 1 4.1204 2.1326 -0.0075 34 1 5.3516 -0.0001 -0.0091 35 1 4.1206 -2.1323 -0.0015 36 1 2.7195 -4.0969 0.2732 37 1 0.5299 -4.7846 1.0533 38 1 0.6756 -3.5481 2.3254 39 1 0.3506 -6.5333 2.9558 40 1 0.5087 -5.1759 4.0964 41 1 -0.5774 -7.9829 6.2142 42 1 -0.3533 -4.3078 -1.0133 43 1 0.6203 -4.8042 -2.4184 44 1 1.2295 -5.0847 -0.7696 45 1 0.9336 -1.0659 -2.1992 46 1 0.5024 -2.3950 -3.3017 47 1 -0.5203 -2.0446 -1.8876 48 1 3.3223 -3.8667 -1.4361 49 1 2.6563 -3.5230 -3.0506 50 1 3.2240 -2.1879 -2.0195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566112736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:57 Heat of formation + Delta-G solvation = 27.774300 kcal Electronic energy + Delta-G solvation = -26871.516419 eV Core-core repulsion = 23476.664318 eV Total energy + Delta-G solvation = -3394.852101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54485 -38.06753 -36.61578 -34.34749 -33.23267 -32.96927 -31.74047 -30.60005 -27.70210 -27.23157 -27.16370 -26.49593 -24.82079 -22.81299 -21.83021 -21.56135 -21.00747 -18.75600 -16.87496 -16.74586 -16.31894 -15.99591 -15.69108 -15.08115 -14.73344 -14.45075 -14.22882 -14.00782 -13.51666 -13.46258 -13.35148 -13.02862 -12.83813 -12.70960 -12.53544 -12.40253 -12.23743 -12.14596 -12.05967 -11.82781 -11.78538 -11.60212 -11.39026 -11.22638 -11.12485 -10.97265 -10.90987 -10.77873 -10.59421 -10.55868 -10.41617 -10.22857 -9.55097 -9.23252 -8.68277 -8.51797 -8.45434 -8.26525 -6.09560 -4.12558 1.38165 1.46024 3.29428 3.36162 3.40724 3.55656 3.61238 3.75923 4.22103 4.42210 4.60712 4.64480 4.74706 4.81134 4.84229 4.93958 5.06399 5.12990 5.23998 5.28543 5.32974 5.34212 5.50324 5.52250 5.54392 5.58795 5.61399 5.67374 5.70393 5.71329 5.77636 5.82803 5.89685 5.92086 6.08069 6.10123 6.15541 6.17496 6.19420 6.25102 6.37572 6.51623 6.54386 6.57868 6.70919 7.04609 7.17595 7.42929 7.46104 7.53181 7.85533 8.23284 8.39251 8.91923 9.52944 11.01318 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.003267 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.894906 B = 8567.215811 C = 8946.240678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.126 4.126 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.086 4.086 7 C -0.056 4.056 8 C 0.130 3.870 9 H 0.087 0.913 10 N -0.683 5.683 11 C 0.064 3.936 12 C 0.006 3.994 13 H 0.110 0.890 14 C 0.241 3.759 15 N -0.476 5.476 16 C 0.033 3.967 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.086 4.086 26 C -0.149 4.149 27 C -0.142 4.142 28 C -0.148 4.148 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.340 0.660 37 H 0.040 0.960 38 H 0.090 0.910 39 H 0.024 0.976 40 H 0.039 0.961 41 H 0.262 0.738 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 17.932 -14.629 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.104 4.104 7 C -0.057 4.057 8 C 0.020 3.980 9 H 0.105 0.895 10 N -0.315 5.315 11 C -0.066 4.066 12 C -0.016 4.016 13 H 0.128 0.872 14 C -0.076 4.076 15 N -0.154 5.154 16 C -0.005 4.005 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.087 4.087 26 C -0.207 4.207 27 C -0.200 4.200 28 C -0.205 4.205 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.058 0.942 38 H 0.109 0.891 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.806 17.120 -15.028 22.852 hybrid contribution -0.018 -0.982 0.464 1.087 sum 1.787 16.138 -14.563 21.811 Atomic orbital electron populations 1.21067 0.91710 1.03090 1.02526 1.19690 0.95761 0.92588 1.00203 1.20901 0.94215 0.97169 1.02141 1.21040 0.94290 0.97831 1.01048 1.21119 0.99656 0.92677 1.01612 1.20975 0.93759 0.97894 0.97743 1.19585 0.93721 0.93415 0.98999 1.20554 0.96580 0.89828 0.91054 0.89502 1.60657 1.24835 1.20192 1.25804 1.22256 0.93833 0.95182 0.95348 1.19334 0.98842 0.90193 0.93199 0.87186 1.29356 0.92293 0.93558 0.92359 1.81057 1.11009 1.10798 1.12489 1.19154 0.93342 0.95654 0.92396 1.21143 0.93522 1.26282 1.15457 0.92534 1.24942 0.94847 0.96679 0.97453 1.69936 1.07271 1.41617 1.34205 0.86602 0.80084 0.80231 0.81236 1.20428 1.21175 1.19886 1.21077 0.96317 0.95782 0.95572 1.22022 1.00663 0.95829 1.02153 1.22002 0.99322 0.99430 0.99243 1.22027 0.95821 1.02345 1.00312 0.91169 0.91818 0.90604 0.86618 0.86712 0.86579 0.85820 0.83919 0.94172 0.89134 0.95781 0.94243 0.92816 0.92248 0.92378 0.92319 0.91817 0.92829 0.92434 0.92580 0.92758 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.68 36.01 0.31 -0.78 16 2 C -0.08 -0.85 4.90 -104.62 -0.51 -1.36 16 3 C -0.13 -1.25 9.72 -39.58 -0.38 -1.63 16 4 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 5 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 6 C -0.09 -0.98 7.07 -39.58 -0.28 -1.26 16 7 C -0.06 -0.63 3.88 -104.63 -0.41 -1.04 16 8 C 0.13 1.44 1.48 -68.87 -0.10 1.34 16 9 H 0.09 0.97 5.68 -51.93 -0.29 0.67 16 10 N -0.68 -8.83 5.16 -107.95 -0.56 -9.39 16 11 C 0.06 0.92 4.37 -3.82 -0.02 0.91 16 12 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 13 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 14 C 0.24 4.80 13.00 -20.75 -0.27 4.53 16 15 N -0.48 -10.19 18.54 42.17 0.78 -9.41 16 16 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 17 C -0.53 -13.99 8.60 -34.44 -0.30 -14.29 16 18 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 21 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.09 -0.87 0.54 -154.51 -0.08 -0.96 16 26 C -0.15 -1.65 7.25 37.15 0.27 -1.39 16 27 C -0.14 -1.26 7.06 37.16 0.26 -1.00 16 28 C -0.15 -1.52 7.23 37.16 0.27 -1.25 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.08 0.63 3.62 -51.93 -0.19 0.44 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.43 7.12 -52.49 -0.37 1.06 16 36 H 0.34 4.57 4.72 -39.29 -0.19 4.38 16 37 H 0.04 0.58 6.14 -51.93 -0.32 0.26 16 38 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 0.63 8.07 -51.92 -0.42 0.21 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.76 5.81 -51.93 -0.30 0.46 16 45 H 0.06 0.58 5.89 -51.93 -0.31 0.27 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.47 6.90 -51.93 -0.36 0.11 16 48 H 0.06 0.62 6.48 -51.93 -0.34 0.29 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.68 5.72 -51.93 -0.30 0.38 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -29.24 383.46 -8.75 -37.98 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.98 Total: 2.87 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.48 Total: -19.42 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.96 Total: -43.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.24 -8.75 -37.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566112736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.758 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds