Wall clock time and date at job start Tue Mar 31 2020 11:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99497 * 2 1 4 4 C 1.38215 * 119.99377 * 180.23196 * 3 2 1 5 5 C 1.38250 * 120.00280 * 359.80950 * 4 3 2 6 6 C 1.38213 * 120.00266 * 359.97438 * 5 4 3 7 7 C 1.38206 * 119.99956 * 179.78452 * 2 1 3 8 8 C 1.50705 * 120.00171 * 0.02562 * 7 2 1 9 9 H 1.08995 * 109.47326 * 338.15612 * 8 7 2 10 10 N 1.46901 * 109.46791 * 218.15623 * 8 7 2 11 11 C 1.46905 * 110.99720 * 127.93912 * 10 8 7 12 12 C 1.53003 * 109.47326 * 185.13551 * 11 10 8 13 13 H 1.09005 * 109.46860 * 305.00722 * 12 11 10 14 14 C 1.47197 * 109.46695 * 64.99851 * 12 11 10 15 15 N 5.88282 * 111.65584 * 129.86996 * 2 1 3 16 16 C 1.52994 * 109.47127 * 185.00303 * 12 11 10 17 17 C 1.50700 * 109.46903 * 175.00343 * 16 12 11 18 18 H 1.07999 * 120.00093 * 359.97438 * 17 16 12 19 19 C 1.37877 * 119.99869 * 179.97438 * 17 16 12 20 20 N 1.31516 * 120.00264 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00002 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46731 * 59.99990 * 21 19 17 23 23 H 1.48500 * 109.47415 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47332 * 300.00273 * 21 19 17 25 25 C 1.52997 * 109.47279 * 98.15906 * 8 7 2 26 26 C 1.52999 * 109.47134 * 57.80359 * 25 8 7 27 27 C 1.52997 * 109.47099 * 177.80341 * 25 8 7 28 28 C 1.52998 * 109.47094 * 297.80286 * 25 8 7 29 29 H 1.08993 * 109.47406 * 272.34135 * 1 2 3 30 30 H 1.08996 * 109.47163 * 32.34232 * 1 2 3 31 31 H 1.09002 * 109.46714 * 152.34260 * 1 2 3 32 32 H 1.07993 * 120.00456 * 0.06482 * 3 2 1 33 33 H 1.08001 * 119.99335 * 179.83546 * 4 3 2 34 34 H 1.08005 * 120.00285 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00325 * 179.97438 * 6 5 4 36 36 H 1.00896 * 111.00498 * 251.89356 * 10 8 7 37 37 H 1.08992 * 109.47335 * 305.13900 * 11 10 8 38 38 H 1.09007 * 109.46815 * 65.13863 * 11 10 8 39 39 H 1.09001 * 109.47283 * 294.99715 * 16 12 11 40 40 H 1.08997 * 109.47109 * 54.99918 * 16 12 11 41 41 H 0.97001 * 120.00175 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47796 * 60.00075 * 26 25 8 43 43 H 1.09004 * 109.47357 * 180.02562 * 26 25 8 44 44 H 1.08998 * 109.47262 * 299.99504 * 26 25 8 45 45 H 1.08998 * 109.47364 * 62.95760 * 27 25 8 46 46 H 1.09005 * 109.47311 * 182.95583 * 27 25 8 47 47 H 1.09003 * 109.47118 * 302.95369 * 27 25 8 48 48 H 1.09004 * 109.47254 * 51.54575 * 28 25 8 49 49 H 1.09001 * 109.47558 * 171.54283 * 28 25 8 50 50 H 1.08998 * 109.47243 * 291.54747 * 28 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2716 0.0001 -0.0057 6 6 3.5807 -1.1969 -0.0012 7 6 2.1981 -1.1969 0.0045 8 6 1.4446 -2.5020 0.0088 9 1 0.4367 -2.3385 0.3902 10 7 2.1427 -3.4675 0.8682 11 6 1.2249 -4.0550 1.8535 12 6 2.0107 -4.9553 2.8090 13 1 2.5656 -5.6975 2.2352 14 6 2.9510 -4.1372 3.5921 15 7 3.6780 -3.5050 4.1964 16 6 1.0402 -5.6639 3.7560 17 6 1.8001 -6.6419 4.6146 18 1 2.8684 -6.7477 4.4963 19 6 1.1316 -7.4015 5.5510 20 7 -0.1692 -7.2723 5.6954 21 14 2.0735 -8.6142 6.6148 22 1 3.0969 -7.8865 7.4075 23 1 1.1318 -9.3011 7.5349 24 1 2.7408 -9.6187 5.7482 25 6 1.3674 -3.0512 -1.4171 26 6 2.7820 -3.2292 -1.9723 27 6 0.6504 -4.4026 -1.4051 28 6 0.5927 -2.0707 -2.3000 29 1 -0.3634 0.0420 1.0267 30 1 -0.3633 0.8682 -0.5498 31 1 -0.3633 -0.9103 -0.4770 32 1 1.6582 2.1326 0.0011 33 1 4.1203 2.1327 -0.0075 34 1 5.3517 0.0001 -0.0091 35 1 4.1207 -2.1322 -0.0023 36 1 2.5894 -4.1851 0.3173 37 1 0.7413 -3.2590 2.4194 38 1 0.4678 -4.6458 1.3377 39 1 0.5497 -4.9270 4.3919 40 1 0.2896 -6.1984 3.1737 41 1 -0.6395 -7.8065 6.3545 42 1 3.3340 -3.9277 -1.3434 43 1 2.7270 -3.6200 -2.9884 44 1 3.2928 -2.2664 -1.9810 45 1 -0.3743 -4.2673 -1.0591 46 1 0.6417 -4.8184 -2.4127 47 1 1.1730 -5.0853 -0.7349 48 1 1.0151 -1.0717 -2.1909 49 1 0.6653 -2.3840 -3.3414 50 1 -0.4541 -2.0576 -1.9965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566112737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:59 Heat of formation + Delta-G solvation = 26.897443 kcal Electronic energy + Delta-G solvation = -26853.969246 eV Core-core repulsion = 23459.079121 eV Total energy + Delta-G solvation = -3394.890124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48930 -37.96455 -36.53495 -34.26660 -33.21291 -32.94757 -31.67745 -30.57293 -27.65570 -27.21186 -27.20015 -26.49157 -24.82312 -22.77533 -21.73693 -21.57247 -20.96825 -18.82255 -17.15189 -16.46878 -16.32443 -15.77945 -15.60743 -15.04814 -14.66528 -14.46278 -14.19533 -14.02950 -13.71016 -13.36763 -13.19547 -13.13564 -12.76511 -12.72074 -12.47081 -12.23723 -12.18783 -12.17390 -11.93109 -11.84364 -11.77448 -11.61999 -11.31111 -11.20684 -11.07176 -11.04604 -10.89112 -10.67260 -10.57434 -10.56443 -10.40480 -10.20994 -9.53141 -9.23523 -8.63878 -8.46833 -8.44780 -8.25734 -6.09044 -4.12120 1.42281 1.50834 3.31364 3.35696 3.39582 3.77177 3.80996 3.88508 4.21671 4.42454 4.60417 4.65009 4.75248 4.86902 4.94425 4.96626 5.10484 5.15965 5.26558 5.29080 5.31271 5.35098 5.49512 5.52499 5.56229 5.59323 5.64442 5.67816 5.71752 5.75305 5.78404 5.84770 5.86973 5.93079 6.01656 6.08185 6.12417 6.19854 6.21283 6.24018 6.39852 6.50451 6.55610 6.62050 6.73899 7.08869 7.19258 7.42513 7.50623 7.55020 7.86117 8.23959 8.64086 8.92466 9.53284 11.01795 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.003354 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.571972 B = 8347.133524 C = 8974.896569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.082 4.082 7 C -0.058 4.058 8 C 0.131 3.869 9 H 0.081 0.919 10 N -0.685 5.685 11 C 0.066 3.934 12 C 0.011 3.989 13 H 0.098 0.902 14 C 0.255 3.745 15 N -0.479 5.479 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.082 4.082 26 C -0.147 4.147 27 C -0.149 4.149 28 C -0.144 4.144 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.342 0.658 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.037 0.963 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 12.254 -19.518 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.059 4.059 8 C 0.021 3.979 9 H 0.099 0.901 10 N -0.317 5.317 11 C -0.064 4.064 12 C -0.011 4.011 13 H 0.115 0.885 14 C -0.062 4.062 15 N -0.156 5.156 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.083 4.083 26 C -0.205 4.205 27 C -0.206 4.206 28 C -0.201 4.201 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.566 13.592 -18.058 22.656 hybrid contribution -0.243 -1.493 0.032 1.513 sum 1.324 12.099 -18.026 21.750 Atomic orbital electron populations 1.21019 0.91747 1.02901 1.02496 1.19698 0.95730 0.92682 1.00317 1.20894 0.94220 0.97159 1.02261 1.21034 0.94297 0.97831 1.01039 1.21127 0.99651 0.92762 1.01613 1.20976 0.93766 0.97865 0.97401 1.19613 0.93764 0.93471 0.99047 1.20532 0.96324 0.89979 0.91046 0.90087 1.60544 1.32349 1.20228 1.18602 1.22187 0.93694 0.97530 0.92964 1.19184 0.93803 0.93403 0.94681 0.88457 1.28886 0.92877 0.92214 0.92216 1.81036 1.11571 1.11613 1.11355 1.19153 0.93231 0.95004 0.93245 1.21107 0.94230 1.21653 1.19450 0.92574 1.24943 0.94829 0.97117 0.97008 1.69927 1.07322 1.40791 1.35022 0.86665 0.79751 0.81285 0.80444 1.20223 1.21203 1.20066 1.20996 0.96373 0.95788 0.95170 1.22032 0.95651 1.02427 1.00358 1.21985 1.00467 0.95972 1.02164 1.21995 0.99616 0.99504 0.98997 0.91267 0.91842 0.90732 0.86660 0.86746 0.86646 0.85703 0.83639 0.90627 0.93085 0.95633 0.94512 0.92765 0.92227 0.92837 0.91651 0.92364 0.92313 0.92093 0.91814 0.92800 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.73 36.01 0.31 -0.85 16 2 C -0.08 -0.95 4.86 -104.63 -0.51 -1.46 16 3 C -0.13 -1.40 9.71 -39.58 -0.38 -1.79 16 4 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 5 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 6 C -0.08 -1.01 7.08 -39.58 -0.28 -1.29 16 7 C -0.06 -0.69 3.87 -104.62 -0.40 -1.10 16 8 C 0.13 1.44 1.44 -68.86 -0.10 1.34 16 9 H 0.08 0.92 5.57 -51.93 -0.29 0.63 16 10 N -0.69 -8.58 4.85 -107.95 -0.52 -9.10 16 11 C 0.07 0.95 4.44 -3.82 -0.02 0.93 16 12 C 0.01 0.21 2.40 -93.41 -0.22 -0.02 16 13 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 14 C 0.25 5.38 13.67 -20.72 -0.28 5.09 16 15 N -0.48 -11.08 18.55 42.20 0.78 -10.30 16 16 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 17 C -0.53 -13.98 8.60 -34.44 -0.30 -14.28 16 18 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.08 -0.74 0.54 -154.51 -0.08 -0.82 16 26 C -0.15 -1.31 7.19 37.16 0.27 -1.04 16 27 C -0.15 -1.31 7.77 37.16 0.29 -1.02 16 28 C -0.14 -1.20 7.13 37.16 0.26 -0.93 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 31 H 0.07 0.64 3.90 -51.93 -0.20 0.44 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.13 1.54 7.02 -52.49 -0.37 1.17 16 36 H 0.34 3.87 5.37 -39.29 -0.21 3.66 16 37 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.05 0.66 7.25 -51.93 -0.38 0.28 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.06 0.53 6.51 -51.93 -0.34 0.19 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.63 5.71 -51.93 -0.30 0.33 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.57 6.14 -51.93 -0.32 0.25 16 48 H 0.06 0.58 5.76 -51.93 -0.30 0.28 16 49 H 0.05 0.42 8.13 -51.93 -0.42 -0.01 16 50 H 0.06 0.44 7.06 -51.93 -0.37 0.07 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -30.41 386.57 -8.75 -39.16 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.09 Total: 1.57 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.46 Total: -18.71 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 1.00 Total: -44.15 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.41 -8.75 -39.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566112737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.060 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds