Wall clock time and date at job start Tue Mar 31 2020 10:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00030 * 2 1 4 4 C 1.52998 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47511 * 305.00036 * 4 3 2 6 6 C 1.53006 * 109.47170 * 185.00444 * 4 3 2 7 7 N 1.46492 * 109.47316 * 179.97438 * 6 4 3 8 8 C 1.34781 * 120.00212 * 180.02562 * 7 6 4 9 9 O 1.21590 * 119.99869 * 355.01432 * 8 7 6 10 10 N 1.34776 * 120.00030 * 175.01620 * 8 7 6 11 11 C 1.46926 * 120.63325 * 4.94194 * 10 8 7 12 12 C 1.53616 * 108.54398 * 126.36864 * 11 10 8 13 13 C 1.53034 * 109.24449 * 54.85607 * 12 11 10 14 14 C 1.53006 * 109.46338 * 178.48826 * 13 12 11 15 15 C 1.50693 * 109.46998 * 295.07201 * 14 13 12 16 16 H 1.08001 * 120.00376 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99859 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00054 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99820 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47245 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46752 * 120.00077 * 19 17 15 22 22 H 1.48501 * 109.47064 * 239.99502 * 19 17 15 23 23 C 1.53039 * 109.54059 * 298.51337 * 13 12 11 24 24 C 1.46930 * 120.62934 * 185.22106 * 10 8 7 25 25 O 1.42897 * 109.47429 * 65.00345 * 4 3 2 26 26 C 1.42898 * 114.00027 * 270.00176 * 25 4 3 27 27 H 1.09004 * 109.47135 * 59.99286 * 1 2 3 28 28 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46837 * 299.99567 * 1 2 3 30 30 H 1.08998 * 109.47304 * 300.00538 * 3 2 1 31 31 H 1.09005 * 109.46439 * 60.00605 * 3 2 1 32 32 H 1.08997 * 109.46885 * 300.00668 * 6 4 3 33 33 H 1.09002 * 109.46914 * 59.99624 * 6 4 3 34 34 H 0.97003 * 120.00106 * 359.97438 * 7 6 4 35 35 H 1.08997 * 109.58425 * 246.20597 * 11 10 8 36 36 H 1.09000 * 109.58657 * 6.62467 * 11 10 8 37 37 H 1.09000 * 109.63617 * 294.86416 * 12 11 10 38 38 H 1.08998 * 109.43305 * 174.72357 * 12 11 10 39 39 H 1.09005 * 109.45192 * 58.52308 * 13 12 11 40 40 H 1.08999 * 109.46764 * 55.06846 * 14 13 12 41 41 H 1.08998 * 109.46988 * 175.06843 * 14 13 12 42 42 H 0.96998 * 119.99977 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.49526 * 301.41087 * 23 13 12 44 44 H 1.09003 * 109.52905 * 181.33227 * 23 13 12 45 45 H 1.08996 * 109.58261 * 353.37164 * 24 10 8 46 46 H 1.08994 * 109.58748 * 113.65602 * 24 10 8 47 47 H 1.08998 * 109.46979 * 179.97438 * 26 25 4 48 48 H 1.08996 * 109.46741 * 299.99593 * 26 25 4 49 49 H 1.08997 * 109.47278 * 59.99800 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8515 0.5682 0.8409 6 6 4.1574 2.5769 0.1252 7 7 5.6177 2.4612 0.1252 8 6 6.3814 3.5671 0.2275 9 8 5.8621 4.6665 0.2285 10 7 7.7206 3.4542 0.3287 11 6 8.3716 2.1415 0.2206 12 6 9.4586 2.2228 -0.8618 13 6 10.4136 3.3723 -0.5321 14 6 11.5203 3.4341 -1.5869 15 6 12.3575 2.1835 -1.5104 16 1 12.1241 1.4210 -0.7820 17 6 13.4224 2.0132 -2.3696 18 7 13.7070 2.9418 -3.2562 19 14 14.4607 0.4632 -2.2742 20 1 13.9370 -0.4181 -1.1999 21 1 14.4027 -0.2521 -3.5743 22 1 15.8682 0.8281 -1.9724 23 6 9.6414 4.6935 -0.5253 24 6 8.5568 4.6409 0.5554 25 8 3.9649 0.5798 -1.2220 26 6 4.0463 -0.8459 -1.1673 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 3.8413 3.1934 -0.7163 33 1 3.8298 3.0383 1.0568 34 1 6.0351 1.5886 0.0523 35 1 8.8232 1.8778 1.1769 36 1 7.6332 1.3892 -0.0569 37 1 8.9962 2.4012 -1.8326 38 1 10.0137 1.2852 -0.8894 39 1 10.8568 3.2057 0.4498 40 1 11.0734 3.5121 -2.5780 41 1 12.1497 4.3047 -1.4025 42 1 14.4559 2.8218 -3.8609 43 1 9.1772 4.8486 -1.4993 44 1 10.3262 5.5147 -0.3138 45 1 7.9407 5.5382 0.4987 46 1 9.0214 4.5780 1.5394 47 1 4.3785 -1.2281 -2.1325 48 1 4.7575 -1.1397 -0.3954 49 1 3.0646 -1.2571 -0.9325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570040005.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:47 Heat of formation + Delta-G solvation = -129.677577 kcal Electronic energy + Delta-G solvation = -26991.032903 eV Core-core repulsion = 23146.211162 eV Total energy + Delta-G solvation = -3844.821741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30270 -39.19311 -37.57790 -37.22168 -34.78736 -33.95551 -32.22779 -31.37751 -30.44048 -28.12734 -27.46262 -26.46274 -25.41229 -24.23988 -22.85632 -21.98975 -21.69875 -20.01683 -19.17293 -17.96371 -17.46132 -17.04195 -16.38432 -16.26519 -15.83843 -15.68771 -15.32390 -14.97614 -14.52764 -14.31980 -14.21004 -13.93960 -13.70718 -13.55441 -13.14814 -12.97199 -12.76118 -12.56703 -12.34430 -12.24271 -12.08999 -11.76713 -11.54606 -11.30341 -11.17512 -10.94546 -10.80551 -10.67838 -10.45926 -10.19566 -10.08683 -9.95992 -9.83475 -9.61257 -9.25418 -9.11645 -8.93525 -8.35077 -8.19783 -5.99172 -4.01080 2.65710 3.27760 3.30143 3.34333 3.38080 3.40698 3.43079 4.00559 4.45521 4.52477 4.61541 4.63883 4.87850 4.91950 5.00529 5.12185 5.14105 5.22785 5.23652 5.31699 5.35598 5.38142 5.39992 5.51638 5.55556 5.62453 5.64643 5.71572 5.78857 6.03704 6.13952 6.38556 6.43181 6.43983 6.54204 6.64905 6.69661 6.86408 6.99470 7.03131 7.12001 7.14067 7.68696 7.83675 8.01040 8.05588 8.43267 8.71773 9.05746 9.62591 11.12108 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.002636 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.377204 B =10621.500479 C =11895.291596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.041 3.959 4 C 0.081 3.919 5 H 0.075 0.925 6 C 0.146 3.854 7 N -0.744 5.744 8 C 0.709 3.291 9 O -0.600 6.600 10 N -0.622 5.622 11 C 0.110 3.890 12 C -0.118 4.118 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.130 4.130 24 C 0.130 3.870 25 O -0.375 6.375 26 C 0.029 3.971 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.399 0.601 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.084 0.916 48 H 0.039 0.961 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.976 -5.779 8.935 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.036 4.036 4 C 0.022 3.978 5 H 0.093 0.907 6 C 0.021 3.979 7 N -0.402 5.402 8 C 0.411 3.589 9 O -0.479 6.479 10 N -0.358 5.358 11 C -0.013 4.013 12 C -0.156 4.156 13 C -0.098 4.098 14 C -0.010 4.010 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.168 4.168 24 C 0.007 3.993 25 O -0.293 6.293 26 C -0.067 4.067 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.083 -4.992 8.650 26.071 hybrid contribution 0.601 -1.336 0.035 1.466 sum -23.481 -6.328 8.685 25.823 Atomic orbital electron populations 1.22761 0.80745 1.02839 1.00153 1.87845 1.20007 1.27484 1.95481 1.23049 0.93547 0.85446 1.01563 1.22355 0.91888 0.94840 0.88742 0.90664 1.21065 0.79598 0.94296 1.02920 1.45030 1.05832 1.08869 1.80503 1.15764 0.81384 0.84090 0.77698 1.90877 1.72594 1.25223 1.59190 1.47326 1.03882 1.09206 1.75435 1.21887 0.95819 0.83337 1.00289 1.21965 0.95444 1.01218 0.96963 1.21175 0.95837 0.91815 1.01009 1.19134 0.91824 0.97024 0.93050 1.21274 1.12515 1.04043 1.17478 0.92571 1.25035 0.97585 0.96388 0.95561 1.69974 1.29117 1.33600 1.20736 0.86593 0.80351 0.83565 0.77803 1.19787 1.21117 1.21126 1.22042 0.96799 0.99526 0.98479 1.21544 0.92039 0.87344 0.98326 1.87969 1.87737 1.20357 1.33237 1.22900 1.01051 0.80512 1.02262 0.93876 0.89562 0.93979 0.91827 0.91982 0.90573 0.90265 0.76444 0.91573 0.91554 0.92212 0.89836 0.92385 0.96629 0.96560 0.93119 0.92044 0.91150 0.89593 0.92083 0.89744 0.94227 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.25 8.83 -40.08 -0.35 -3.61 16 3 C 0.04 0.32 5.60 37.16 0.21 0.52 16 4 C 0.08 0.71 2.58 -26.73 -0.07 0.64 16 5 H 0.08 0.60 7.79 -51.93 -0.40 0.19 16 6 C 0.15 1.52 5.37 -4.04 -0.02 1.50 16 7 N -0.74 -9.22 5.36 -65.23 -0.35 -9.57 16 8 C 0.71 11.26 8.30 -86.91 -0.72 10.54 16 9 O -0.60 -11.40 15.77 5.29 0.08 -11.32 16 10 N -0.62 -9.49 2.97 -178.24 -0.53 -10.02 16 11 C 0.11 1.52 6.42 -3.49 -0.02 1.49 16 12 C -0.12 -2.05 5.21 -26.39 -0.14 -2.19 16 13 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 14 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 15 C -0.51 -13.95 8.39 -34.44 -0.29 -14.24 16 16 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.13 -2.25 5.36 -26.61 -0.14 -2.39 16 24 C 0.13 2.01 6.44 -3.71 -0.02 1.99 16 25 O -0.37 -3.99 10.09 -40.08 -0.40 -4.39 16 26 C 0.03 0.25 10.71 101.05 1.08 1.33 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 4.37 5.84 -40.82 -0.24 4.13 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.77 5.64 -51.93 -0.29 0.47 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.53 6.91 -51.93 -0.36 1.17 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.09 1.38 6.99 -51.93 -0.36 1.01 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 49 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -33.28 387.83 -8.11 -41.39 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.68 Total: 0.62 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 0.56 Total: 0.74 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.14 Total: -45.52 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.67 Total: -19.32 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.28 -8.11 -41.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570040005.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.285 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds