Wall clock time and date at job start Tue Mar 31 2020 10:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00030 * 2 1 4 4 C 1.52998 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47511 * 305.00036 * 4 3 2 6 6 C 1.53006 * 109.47170 * 185.00444 * 4 3 2 7 7 N 1.46492 * 109.47316 * 179.97438 * 6 4 3 8 8 C 1.34781 * 120.00212 * 180.02562 * 7 6 4 9 9 O 1.21590 * 119.99869 * 355.01432 * 8 7 6 10 10 N 1.34776 * 120.00030 * 175.01620 * 8 7 6 11 11 C 1.46926 * 120.63325 * 4.94194 * 10 8 7 12 12 C 1.53616 * 108.54398 * 126.36864 * 11 10 8 13 13 C 1.53034 * 109.24449 * 54.85607 * 12 11 10 14 14 C 1.53006 * 109.46338 * 178.48826 * 13 12 11 15 15 C 1.50693 * 109.46998 * 295.07201 * 14 13 12 16 16 H 1.08001 * 120.00376 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99859 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00054 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99820 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47245 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46752 * 120.00077 * 19 17 15 22 22 H 1.48501 * 109.47064 * 239.99502 * 19 17 15 23 23 C 1.53039 * 109.54059 * 298.51337 * 13 12 11 24 24 C 1.46930 * 120.62934 * 185.22106 * 10 8 7 25 25 O 1.42897 * 109.47429 * 65.00345 * 4 3 2 26 26 C 1.42898 * 114.00027 * 270.00176 * 25 4 3 27 27 H 1.09004 * 109.47135 * 59.99286 * 1 2 3 28 28 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46837 * 299.99567 * 1 2 3 30 30 H 1.08998 * 109.47304 * 300.00538 * 3 2 1 31 31 H 1.09005 * 109.46439 * 60.00605 * 3 2 1 32 32 H 1.08997 * 109.46885 * 300.00668 * 6 4 3 33 33 H 1.09002 * 109.46914 * 59.99624 * 6 4 3 34 34 H 0.97003 * 120.00106 * 359.97438 * 7 6 4 35 35 H 1.08997 * 109.58425 * 246.20597 * 11 10 8 36 36 H 1.09000 * 109.58657 * 6.62467 * 11 10 8 37 37 H 1.09000 * 109.63617 * 294.86416 * 12 11 10 38 38 H 1.08998 * 109.43305 * 174.72357 * 12 11 10 39 39 H 1.09005 * 109.45192 * 58.52308 * 13 12 11 40 40 H 1.08999 * 109.46764 * 55.06846 * 14 13 12 41 41 H 1.08998 * 109.46988 * 175.06843 * 14 13 12 42 42 H 0.96998 * 119.99977 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.49526 * 301.41087 * 23 13 12 44 44 H 1.09003 * 109.52905 * 181.33227 * 23 13 12 45 45 H 1.08996 * 109.58261 * 353.37164 * 24 10 8 46 46 H 1.08994 * 109.58748 * 113.65602 * 24 10 8 47 47 H 1.08998 * 109.46979 * 179.97438 * 26 25 4 48 48 H 1.08996 * 109.46741 * 299.99593 * 26 25 4 49 49 H 1.08997 * 109.47278 * 59.99800 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8515 0.5682 0.8409 6 6 4.1574 2.5769 0.1252 7 7 5.6177 2.4612 0.1252 8 6 6.3814 3.5671 0.2275 9 8 5.8621 4.6665 0.2285 10 7 7.7206 3.4542 0.3287 11 6 8.3716 2.1415 0.2206 12 6 9.4586 2.2228 -0.8618 13 6 10.4136 3.3723 -0.5321 14 6 11.5203 3.4341 -1.5869 15 6 12.3575 2.1835 -1.5104 16 1 12.1241 1.4210 -0.7820 17 6 13.4224 2.0132 -2.3696 18 7 13.7070 2.9418 -3.2562 19 14 14.4607 0.4632 -2.2742 20 1 13.9370 -0.4181 -1.1999 21 1 14.4027 -0.2521 -3.5743 22 1 15.8682 0.8281 -1.9724 23 6 9.6414 4.6935 -0.5253 24 6 8.5568 4.6409 0.5554 25 8 3.9649 0.5798 -1.2220 26 6 4.0463 -0.8459 -1.1673 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 3.8413 3.1934 -0.7163 33 1 3.8298 3.0383 1.0568 34 1 6.0351 1.5886 0.0523 35 1 8.8232 1.8778 1.1769 36 1 7.6332 1.3892 -0.0569 37 1 8.9962 2.4012 -1.8326 38 1 10.0137 1.2852 -0.8894 39 1 10.8568 3.2057 0.4498 40 1 11.0734 3.5121 -2.5780 41 1 12.1497 4.3047 -1.4025 42 1 14.4559 2.8218 -3.8609 43 1 9.1772 4.8486 -1.4993 44 1 10.3262 5.5147 -0.3138 45 1 7.9407 5.5382 0.4987 46 1 9.0214 4.5780 1.5394 47 1 4.3785 -1.2281 -2.1325 48 1 4.7575 -1.1397 -0.3954 49 1 3.0646 -1.2571 -0.9325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570040005.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:45 Heat of formation + Delta-G solvation = -152.109168 kcal Electronic energy + Delta-G solvation = -26992.005609 eV Core-core repulsion = 23146.211162 eV Total energy + Delta-G solvation = -3845.794448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.48079 -39.92717 -38.80420 -37.98268 -35.83890 -35.65487 -33.98272 -32.42623 -31.59122 -29.77844 -28.14767 -27.18679 -26.47673 -25.57840 -24.18837 -23.39832 -22.62070 -21.43287 -20.46213 -19.15525 -18.38750 -18.13645 -17.83316 -17.10530 -16.72456 -16.63030 -16.50016 -16.15424 -15.78428 -15.37454 -15.19736 -14.97384 -14.92965 -14.71150 -14.65213 -14.33260 -13.92802 -13.78364 -13.36867 -13.28881 -13.05750 -12.95083 -12.73210 -12.66460 -12.51009 -12.29527 -12.13827 -12.11960 -11.97875 -11.71354 -11.41637 -11.24455 -10.97352 -10.81234 -10.74759 -10.51390 -10.49359 -10.23111 -9.42813 -8.14588 -6.24089 1.42364 1.43028 1.55439 1.61054 2.12015 2.44208 2.63093 2.72276 3.04205 3.19256 3.83364 3.92164 3.98335 4.02305 4.06512 4.10411 4.22869 4.38596 4.43403 4.46684 4.53389 4.53827 4.55764 4.57141 4.63314 4.69905 4.73886 4.82643 4.85282 4.86854 4.92343 4.99103 5.01850 5.11484 5.33267 5.34901 5.40513 5.44722 5.57087 5.61647 5.83581 5.91711 5.98275 6.14272 6.20272 6.30985 6.93026 6.93683 7.44626 7.52971 8.97665 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.002636 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.377204 B =10621.500479 C =11895.291596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.042 3.958 4 C 0.086 3.914 5 H 0.088 0.912 6 C 0.146 3.854 7 N -0.732 5.732 8 C 0.704 3.296 9 O -0.635 6.635 10 N -0.625 5.625 11 C 0.119 3.881 12 C -0.113 4.113 13 C -0.072 4.072 14 C 0.031 3.969 15 C -0.523 4.523 16 H 0.069 0.931 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.962 3.038 20 H -0.255 1.255 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.137 3.863 25 O -0.398 6.398 26 C 0.028 3.972 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.067 0.933 40 H -0.019 1.019 41 H -0.014 1.014 42 H 0.260 0.740 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.002 -7.891 10.957 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.035 4.035 4 C 0.028 3.972 5 H 0.106 0.894 6 C 0.021 3.979 7 N -0.390 5.390 8 C 0.406 3.594 9 O -0.517 6.517 10 N -0.361 5.361 11 C -0.003 4.003 12 C -0.151 4.151 13 C -0.091 4.091 14 C -0.006 4.006 15 C -0.561 4.561 16 H 0.087 0.913 17 C -0.204 4.204 18 N -0.580 5.580 19 Si 0.787 3.213 20 H -0.179 1.179 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.161 4.161 24 C 0.014 3.986 25 O -0.318 6.318 26 C -0.068 4.068 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.000 1.000 41 H 0.005 0.995 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.070 0.930 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.133 -7.146 10.687 28.230 hybrid contribution 0.892 -0.646 -0.646 1.277 sum -24.242 -7.792 10.041 27.371 Atomic orbital electron populations 1.22921 0.79439 1.03807 1.00823 1.87806 1.21468 1.27742 1.95626 1.23020 0.92751 0.85499 1.02231 1.22325 0.92547 0.93755 0.88587 0.89372 1.21173 0.78413 0.95388 1.02893 1.44973 1.06506 1.08288 1.79230 1.15937 0.81582 0.84325 0.77574 1.90853 1.73235 1.26794 1.60804 1.47369 1.03886 1.09578 1.75271 1.21891 0.95268 0.83286 0.99886 1.21847 0.95992 0.99708 0.97543 1.21028 0.94849 0.93984 0.99203 1.19036 0.92965 0.95405 0.93188 1.21702 1.12440 1.04681 1.17284 0.91263 1.26006 0.99240 0.99852 0.95256 1.70127 1.29971 1.35996 1.21876 0.85446 0.78253 0.79447 0.78187 1.17880 1.20960 1.20966 1.21931 0.97254 0.98491 0.98445 1.21447 0.91193 0.87566 0.98346 1.87935 1.88020 1.21472 1.34334 1.22968 1.01397 0.79549 1.02884 0.93679 0.88528 0.92834 0.92379 0.90134 0.92178 0.89030 0.75454 0.89273 0.88870 0.94143 0.90477 0.91477 1.00029 0.99516 0.93125 0.94048 0.90877 0.90182 0.89775 0.89529 0.92989 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.08 8.83 -144.35 -1.27 -7.36 16 3 C 0.04 0.57 5.60 71.98 0.40 0.98 16 4 C 0.09 1.35 2.58 30.60 0.08 1.43 16 5 H 0.09 1.16 7.79 -2.38 -0.02 1.14 16 6 C 0.15 2.80 5.37 86.38 0.46 3.26 16 7 N -0.73 -16.67 5.36 -478.53 -2.56 -19.23 16 8 C 0.70 21.29 8.30 179.05 1.49 22.78 16 9 O -0.63 -23.70 15.77 -4.00 -0.06 -23.77 16 10 N -0.62 -17.87 2.97 -836.08 -2.48 -20.35 16 11 C 0.12 2.95 6.42 86.51 0.56 3.51 16 12 C -0.11 -3.80 5.21 30.81 0.16 -3.64 16 13 C -0.07 -2.79 2.10 -10.77 -0.02 -2.81 16 14 C 0.03 1.61 4.45 29.85 0.13 1.74 16 15 C -0.52 -28.47 8.39 25.60 0.21 -28.26 16 16 H 0.07 3.52 7.06 -2.91 -0.02 3.49 16 17 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 18 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 19 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 C -0.12 -4.26 5.36 30.67 0.16 -4.09 16 24 C 0.14 4.05 6.44 86.36 0.56 4.61 16 25 O -0.40 -7.89 10.09 -144.35 -1.46 -9.35 16 26 C 0.03 0.43 10.71 113.37 1.21 1.64 16 27 H 0.04 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.37 8.14 -2.38 -0.02 0.36 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.41 7.79 5.84 -92.71 -0.54 7.25 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.83 5.64 -2.39 -0.01 1.82 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 2.71 6.91 -2.39 -0.02 2.69 16 39 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 40 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 41 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.08 2.50 6.99 -2.39 -0.02 2.49 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 49 H 0.06 0.87 6.40 -2.39 -0.02 0.85 16 Total: -1.00 -73.12 387.83 1.97 -71.15 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.38 Total: 17.77 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 7.12 Total: 2.72 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -4.76 Total: -96.68 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -2.79 Total: -40.47 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.12 1.97 -71.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570040005.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.955 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds