Wall clock time and date at job start Tue Mar 31 2020 10:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00288 * 2 1 4 4 H 1.48497 * 109.47289 * 270.00269 * 3 2 1 5 5 H 1.48497 * 109.47082 * 30.00131 * 3 2 1 6 6 H 1.48497 * 109.47331 * 150.00052 * 3 2 1 7 7 C 1.37876 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00359 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47367 * 179.97438 * 9 7 2 11 11 C 1.53122 * 109.52551 * 174.99738 * 10 9 7 12 12 C 1.53032 * 109.27898 * 177.62366 * 11 10 9 13 13 N 1.46847 * 109.52486 * 300.82246 * 12 11 10 14 14 C 1.46902 * 110.99874 * 185.84166 * 13 12 11 15 15 C 1.52998 * 109.47170 * 170.00216 * 14 13 12 16 16 N 1.46901 * 109.47495 * 179.97438 * 15 14 13 17 17 C 1.47906 * 110.99979 * 189.84981 * 16 15 14 18 18 C 1.54609 * 102.62172 * 265.47016 * 17 16 15 19 19 C 1.51576 * 102.83184 * 334.46268 * 18 17 16 20 20 C 1.37923 * 131.55534 * 195.99283 * 19 18 17 21 21 C 1.38296 * 120.07661 * 179.74176 * 20 19 18 22 22 C 1.38314 * 119.88666 * 359.96717 * 21 20 19 23 23 C 1.37906 * 120.25810 * 0.14966 * 22 21 20 24 24 C 1.38961 * 107.95684 * 15.95868 * 19 18 17 25 25 C 1.46843 * 111.19630 * 61.74343 * 13 12 11 26 26 C 1.53037 * 109.52361 * 298.25884 * 25 13 12 27 27 H 0.97008 * 119.99602 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47163 * 60.00096 * 9 7 2 29 29 H 1.09006 * 109.46931 * 300.00122 * 9 7 2 30 30 H 1.09005 * 109.52111 * 54.87601 * 10 9 7 31 31 H 1.09003 * 109.49997 * 57.68413 * 11 10 9 32 32 H 1.09004 * 109.50442 * 297.56794 * 11 10 9 33 33 H 1.09000 * 109.46237 * 180.80661 * 12 11 10 34 34 H 1.09003 * 109.45703 * 60.83728 * 12 11 10 35 35 H 1.08998 * 109.47714 * 49.99908 * 14 13 12 36 36 H 1.09001 * 109.47000 * 289.99741 * 14 13 12 37 37 H 1.08997 * 109.47285 * 59.99780 * 15 14 13 38 38 H 1.09001 * 109.47186 * 300.00007 * 15 14 13 39 39 H 1.08999 * 110.77685 * 147.18981 * 17 16 15 40 40 H 1.08996 * 110.78066 * 23.75298 * 17 16 15 41 41 H 1.09000 * 110.73640 * 216.13089 * 18 17 16 42 42 H 1.08994 * 110.73946 * 92.80476 * 18 17 16 43 43 H 1.07999 * 119.96102 * 359.71109 * 20 19 18 44 44 H 1.07999 * 120.06078 * 179.97438 * 21 20 19 45 45 H 1.07992 * 119.87064 * 180.12956 * 22 21 20 46 46 H 1.08007 * 119.89407 * 179.97438 * 23 22 21 47 47 H 1.09000 * 109.45997 * 58.27774 * 25 13 12 48 48 H 1.09001 * 109.46260 * 178.24073 * 25 13 12 49 49 H 1.09004 * 109.49643 * 299.23769 * 26 25 13 50 50 H 1.09000 * 109.50265 * 179.12120 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4850 -4.9853 0.1240 12 6 2.4793 -6.1470 0.0625 13 7 3.2100 -6.1007 -1.2104 14 6 4.0741 -7.2787 -1.3645 15 6 4.6231 -7.3253 -2.7918 16 7 5.4877 -8.5029 -2.9458 17 6 6.2210 -8.4579 -4.2295 18 6 5.3149 -9.2905 -5.1655 19 6 4.5823 -10.2023 -4.2013 20 6 3.8591 -11.3587 -4.4060 21 6 3.2835 -12.0152 -3.3335 22 6 3.4349 -11.5105 -2.0546 23 6 4.1550 -10.3533 -1.8450 24 6 4.7358 -9.6841 -2.9211 25 6 3.9853 -4.8597 -1.3327 26 6 3.0360 -3.6595 -1.3129 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8897 30 1 2.9318 -3.5552 0.8380 31 1 0.7707 -5.0739 -0.6946 32 1 0.9538 -5.0108 1.0755 33 1 1.9398 -7.0911 0.1375 34 1 3.1847 -6.0653 0.8895 35 1 3.4960 -8.1817 -1.1679 36 1 4.9022 -7.2167 -0.6585 37 1 5.2012 -6.4224 -2.9883 38 1 3.7950 -7.3873 -3.4978 39 1 7.2030 -8.9202 -4.1302 40 1 6.3095 -7.4326 -4.5885 41 1 5.9142 -9.8716 -5.8663 42 1 4.6137 -8.6470 -5.6967 43 1 3.7418 -11.7518 -5.4051 44 1 2.7170 -12.9205 -3.4941 45 1 2.9871 -12.0245 -1.2171 46 1 4.2691 -9.9641 -0.8439 47 1 4.6837 -4.7842 -0.4993 48 1 4.5397 -4.8688 -2.2712 49 1 2.3462 -3.7273 -2.1541 50 1 3.6130 -2.7378 -1.3880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570959134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:27 Heat of formation + Delta-G solvation = 29.768318 kcal Electronic energy + Delta-G solvation = -26074.171365 eV Core-core repulsion = 22679.405731 eV Total energy + Delta-G solvation = -3394.765634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08569 -38.74934 -37.04368 -34.82047 -32.94413 -32.02976 -30.55325 -30.08764 -29.32568 -28.39605 -26.60187 -24.01048 -23.32216 -22.90095 -22.08604 -21.39489 -20.86774 -20.39957 -18.88994 -16.87178 -16.26732 -16.23414 -15.85958 -15.83069 -15.30682 -14.92154 -14.47346 -14.26303 -13.86595 -13.71131 -13.61042 -13.30137 -13.17373 -12.94820 -12.88962 -12.52849 -12.22610 -12.14349 -11.85523 -11.81542 -11.68871 -11.31248 -11.20090 -11.07961 -10.91309 -10.75205 -10.61584 -10.51269 -10.23311 -9.90652 -9.63140 -9.49335 -9.02880 -9.01045 -8.84768 -8.30673 -8.15406 -8.05361 -5.95408 -3.96722 1.08601 1.16230 3.27505 3.33516 3.39971 3.42920 3.53383 4.16772 4.28732 4.49019 4.53230 4.69432 4.74854 4.84616 4.87197 5.07942 5.17387 5.19607 5.31480 5.36161 5.36906 5.39719 5.43968 5.50798 5.54378 5.60093 5.62258 5.70754 5.79133 5.85210 5.90099 5.91549 6.02425 6.14246 6.16891 6.20919 6.27625 6.28895 6.46861 6.50335 6.60638 6.66428 6.73870 7.00818 7.04861 7.13803 7.22709 7.36735 7.41795 7.73263 7.90139 8.05716 8.48894 9.09948 9.66584 11.15960 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.002453 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.803623 B =11414.138250 C =12029.187016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.062 3.938 13 N -0.536 5.536 14 C 0.055 3.945 15 C 0.062 3.938 16 N -0.496 5.496 17 C 0.051 3.949 18 C -0.111 4.111 19 C -0.141 4.141 20 C -0.091 4.091 21 C -0.134 4.134 22 C -0.104 4.104 23 C -0.111 4.111 24 C 0.096 3.904 25 C 0.053 3.947 26 C -0.099 4.099 27 H 0.259 0.741 28 H 0.016 0.984 29 H 0.014 0.986 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.028 0.972 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.232 -23.738 -8.189 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.066 4.066 13 N -0.261 5.261 14 C -0.073 4.073 15 C -0.064 4.064 16 N -0.214 5.214 17 C -0.075 4.075 18 C -0.149 4.149 19 C -0.143 4.143 20 C -0.109 4.109 21 C -0.153 4.153 22 C -0.123 4.123 23 C -0.131 4.131 24 C 0.000 4.000 25 C -0.074 4.074 26 C -0.137 4.137 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.142 0.858 47 H 0.046 0.954 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.118 -23.525 -8.124 26.866 hybrid contribution 0.513 0.950 0.044 1.081 sum 10.631 -22.575 -8.079 26.228 Atomic orbital electron populations 1.69968 1.06021 1.26421 1.51187 1.25020 0.94800 0.99123 0.95587 0.86655 0.79867 0.83804 0.78039 1.20735 1.21320 1.19972 1.21258 0.92908 0.91045 1.49974 0.92731 1.19114 0.93626 0.91052 0.97094 1.21228 0.97874 0.94751 0.96122 1.21693 0.97524 0.94256 1.01475 1.22076 0.96223 0.99377 0.88887 1.61874 1.27875 1.01602 1.34793 1.22105 0.95535 0.94264 0.95406 1.22236 0.95230 0.91092 0.97806 1.60120 1.25721 1.00954 1.34588 1.23153 0.97449 1.00937 0.86007 1.21697 0.98346 0.97137 0.97688 1.21003 1.00666 0.97700 0.94966 1.20388 0.97175 0.94261 0.99089 1.21040 1.01080 1.00532 0.92626 1.20949 0.98425 0.95635 0.97295 1.20580 0.99216 0.95509 0.97795 1.19547 0.94601 0.92502 0.93328 1.22264 0.95355 0.90086 0.99698 1.21544 0.97830 0.95481 0.98861 0.93116 0.96544 0.96781 0.93077 0.91632 0.92129 0.91755 0.95376 0.90722 0.94420 0.89905 0.93122 0.89274 0.89509 0.89694 0.89965 0.86330 0.85854 0.85621 0.85799 0.95385 0.91665 0.91926 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.40 8.45 -34.44 -0.29 -14.69 16 8 H 0.05 1.49 7.08 -52.49 -0.37 1.11 16 9 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 10 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 11 C -0.11 -1.97 5.38 -26.65 -0.14 -2.12 16 12 C 0.06 0.93 5.46 -3.84 -0.02 0.91 16 13 N -0.54 -7.95 4.66 -234.68 -1.09 -9.04 16 14 C 0.06 0.70 4.82 -3.82 -0.02 0.68 16 15 C 0.06 0.72 4.68 -3.82 -0.02 0.70 16 16 N -0.50 -5.40 5.06 -169.02 -0.86 -6.25 16 17 C 0.05 0.44 7.00 -2.42 -0.02 0.42 16 18 C -0.11 -0.90 6.97 -26.61 -0.19 -1.09 16 19 C -0.14 -1.43 6.23 -104.04 -0.65 -2.08 16 20 C -0.09 -0.82 10.03 -39.68 -0.40 -1.22 16 21 C -0.13 -1.15 10.06 -39.53 -0.40 -1.55 16 22 C -0.10 -0.94 10.02 -39.68 -0.40 -1.34 16 23 C -0.11 -1.16 8.53 -39.27 -0.34 -1.50 16 24 C 0.10 1.07 5.29 -83.41 -0.44 0.63 16 25 C 0.05 0.83 5.29 -3.84 -0.02 0.81 16 26 C -0.10 -1.88 5.15 -26.66 -0.14 -2.01 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.93 5.40 -51.93 -0.28 0.65 16 36 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.08 0.93 6.13 -51.93 -0.32 0.61 16 38 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.64 7.60 -51.93 -0.39 0.24 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 1.22 7.16 -52.48 -0.38 0.84 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.91 6.21 -51.93 -0.32 0.59 16 49 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.07 1.45 7.06 -51.93 -0.37 1.08 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -30.80 382.21 -13.10 -43.90 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.74 Total: -1.50 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -3.89 Total: -23.20 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -1.21 Total: -41.69 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.80 -13.10 -43.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570959134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.668 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds