Wall clock time and date at job start Tue Mar 31 2020 10:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99948 * 2 1 4 4 H 1.48499 * 109.47533 * 270.00693 * 3 2 1 5 5 H 1.48506 * 109.46998 * 30.00363 * 3 2 1 6 6 H 1.48496 * 109.46982 * 150.00174 * 3 2 1 7 7 C 1.37872 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.53120 * 109.52624 * 175.00140 * 10 9 7 12 12 C 1.53029 * 109.28342 * 177.62088 * 11 10 9 13 13 N 1.46844 * 109.52556 * 300.82407 * 12 11 10 14 14 C 1.46898 * 111.00358 * 185.83848 * 13 12 11 15 15 C 1.50700 * 109.47585 * 169.99911 * 14 13 12 16 16 C 1.38264 * 120.06795 * 89.99246 * 15 14 13 17 17 C 1.38032 * 119.82641 * 180.09653 * 16 15 14 18 18 C 1.38676 * 120.35591 * 359.97438 * 17 16 15 19 19 C 1.37845 * 119.84255 * 359.85586 * 18 17 16 20 20 C 1.38013 * 120.06555 * 270.02500 * 15 14 13 21 21 C 1.50624 * 121.84579 * 180.43124 * 19 18 17 22 22 N 1.46640 * 110.49356 * 342.45094 * 21 19 18 23 23 C 1.47158 * 110.24781 * 52.53742 * 22 21 19 24 24 C 1.50713 * 118.49652 * 179.83565 * 18 17 16 25 25 C 1.46848 * 111.20012 * 61.73945 * 13 12 11 26 26 C 1.53038 * 109.51956 * 298.25878 * 25 13 12 27 27 H 0.96994 * 119.99900 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47041 * 60.00217 * 9 7 2 29 29 H 1.08999 * 109.47281 * 300.00666 * 9 7 2 30 30 H 1.09000 * 109.52601 * 54.87363 * 10 9 7 31 31 H 1.09005 * 109.50122 * 57.67535 * 11 10 9 32 32 H 1.09003 * 109.53443 * 297.58611 * 11 10 9 33 33 H 1.09000 * 109.46575 * 180.80502 * 12 11 10 34 34 H 1.09001 * 109.45346 * 60.82569 * 12 11 10 35 35 H 1.09003 * 109.47387 * 49.99827 * 14 13 12 36 36 H 1.09005 * 109.47225 * 289.99796 * 14 13 12 37 37 H 1.07998 * 120.08486 * 0.08281 * 16 15 14 38 38 H 1.08003 * 119.82429 * 179.97438 * 17 16 15 39 39 H 1.08003 * 119.81207 * 0.02562 * 20 15 14 40 40 H 1.09003 * 109.31063 * 222.12666 * 21 19 18 41 41 H 1.08997 * 109.27856 * 102.75189 * 21 19 18 42 42 H 1.00901 * 110.99920 * 289.12165 * 22 21 19 43 43 H 1.09002 * 109.63373 * 48.43543 * 23 22 21 44 44 H 1.09002 * 109.63508 * 168.83182 * 23 22 21 45 45 H 1.08995 * 109.38619 * 42.97733 * 24 18 17 46 46 H 1.08998 * 109.30542 * 283.22824 * 24 18 17 47 47 H 1.08994 * 109.46297 * 58.27503 * 25 13 12 48 48 H 1.09005 * 109.46176 * 178.24827 * 25 13 12 49 49 H 1.08998 * 109.50908 * 299.23373 * 26 25 13 50 50 H 1.08998 * 109.53461 * 179.14144 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4853 -4.9853 0.1252 12 6 2.4796 -6.1469 0.0649 13 7 3.2113 -6.1012 -1.2074 14 6 4.0756 -7.2791 -1.3604 15 6 4.6175 -7.3255 -2.7658 16 6 5.8116 -6.6978 -3.0689 17 6 6.3023 -6.7418 -4.3583 18 6 5.6044 -7.4126 -5.3513 19 6 4.4157 -8.0415 -5.0489 20 6 3.9225 -7.9941 -3.7531 21 6 3.6258 -8.7908 -6.0897 22 7 4.0526 -8.4009 -7.4374 23 6 5.5122 -8.5351 -7.5681 24 6 6.1768 -7.4309 -6.7454 25 6 3.9867 -4.8601 -1.3297 26 6 3.0372 -3.6600 -1.3111 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.9314 -3.5548 0.8397 31 1 0.7715 -5.0742 -0.6939 32 1 0.9529 -5.0108 1.0760 33 1 1.9401 -7.0911 0.1398 34 1 3.1844 -6.0647 0.8923 35 1 3.4974 -8.1820 -1.1640 36 1 4.9032 -7.2167 -0.6538 37 1 6.3587 -6.1744 -2.2989 38 1 7.2349 -6.2512 -4.5951 39 1 2.9893 -8.4832 -3.5156 40 1 2.5660 -8.5667 -5.9685 41 1 3.7818 -9.8615 -5.9582 42 1 3.7552 -7.4611 -7.6531 43 1 5.8254 -9.5097 -7.1935 44 1 5.7967 -8.4369 -8.6157 45 1 7.2499 -7.6144 -6.6935 46 1 5.9971 -6.4670 -7.2214 47 1 4.6844 -4.7842 -0.4958 48 1 4.5417 -4.8696 -2.2678 49 1 2.3481 -3.7280 -2.1528 50 1 3.6137 -2.7380 -1.3865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579722875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:06 Heat of formation + Delta-G solvation = 4.050458 kcal Electronic energy + Delta-G solvation = -26083.096014 eV Core-core repulsion = 22687.215170 eV Total energy + Delta-G solvation = -3395.880844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43749 -38.79428 -36.91374 -34.55731 -32.94849 -32.31657 -31.05496 -30.25238 -29.70883 -27.87228 -25.59900 -24.54784 -23.53619 -22.78587 -22.54953 -21.85649 -20.56775 -19.84438 -18.88479 -16.67750 -16.25238 -15.99535 -15.75018 -15.63011 -15.06442 -14.87470 -14.48786 -14.36388 -14.07094 -13.87873 -13.57239 -13.44900 -13.14962 -12.93874 -12.71508 -12.51735 -12.10292 -12.00723 -11.92530 -11.78790 -11.52092 -11.49662 -11.30997 -11.10686 -10.85856 -10.77632 -10.61895 -10.57423 -10.24834 -9.92867 -9.51385 -9.04771 -8.86720 -8.85371 -8.80148 -8.59165 -8.30822 -8.06087 -5.95836 -3.97179 1.18065 1.28344 3.33104 3.39476 3.42318 3.50691 3.97379 4.27116 4.43739 4.48575 4.56002 4.64750 4.76421 4.84448 4.91479 5.09488 5.20635 5.27867 5.30683 5.36843 5.39211 5.39694 5.46707 5.52629 5.54388 5.57907 5.62113 5.67037 5.76898 5.89775 5.94520 5.97374 6.00150 6.15421 6.26337 6.26515 6.42475 6.45640 6.52425 6.61335 6.63124 6.69278 6.89512 7.00276 7.01073 7.12761 7.22242 7.33764 7.40267 7.72519 7.89516 8.05209 8.48350 9.09386 9.66129 11.15570 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.002759 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.984724 B =10146.164398 C =10841.935516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.111 4.111 12 C 0.060 3.940 13 N -0.530 5.530 14 C 0.092 3.908 15 C -0.070 4.070 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.085 4.085 19 C -0.121 4.121 20 C -0.091 4.091 21 C 0.096 3.904 22 N -0.680 5.680 23 C 0.055 3.945 24 C -0.118 4.118 25 C 0.053 3.947 26 C -0.098 4.098 27 H 0.259 0.741 28 H 0.016 0.984 29 H 0.014 0.986 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.345 0.655 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.062 0.938 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -19.800 -10.585 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.068 4.068 13 N -0.255 5.255 14 C -0.036 4.036 15 C -0.070 4.070 16 C -0.129 4.129 17 C -0.137 4.137 18 C -0.086 4.086 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.034 4.034 22 N -0.307 5.307 23 C -0.075 4.075 24 C -0.157 4.157 25 C -0.075 4.075 26 C -0.136 4.136 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.162 0.838 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.068 -20.321 -11.251 25.730 hybrid contribution 1.448 1.937 1.381 2.785 sum 12.516 -18.384 -9.870 24.332 Atomic orbital electron populations 1.69967 1.06010 1.26431 1.51186 1.25018 0.94803 0.99114 0.95578 0.86659 0.79861 0.83813 0.78054 1.20724 1.21298 1.19980 1.21254 0.92891 0.91056 1.49984 0.92768 1.19111 0.93621 0.91051 0.97093 1.21233 0.97867 0.94775 0.96100 1.21686 0.97507 0.94232 1.01487 1.22117 0.96278 0.99480 0.88907 1.61969 1.27578 1.01382 1.34532 1.21021 0.95516 0.94775 0.92238 1.19701 0.94356 0.97334 0.95639 1.21019 0.96101 0.99163 0.96607 1.21006 0.99991 0.99801 0.92882 1.19478 0.94864 0.98809 0.95403 1.20403 0.95885 0.99994 0.95964 1.20901 0.99180 0.99140 0.91761 1.20946 0.98517 0.99056 0.84877 1.61005 1.12570 1.31649 1.25507 1.22077 0.87343 0.98274 0.99781 1.21189 1.00871 1.00655 0.92938 1.22288 0.95411 0.89901 0.99854 1.21529 0.97824 0.95450 0.98805 0.93108 0.96533 0.96781 0.93125 0.91604 0.92112 0.91621 0.95415 0.90260 0.94396 0.86296 0.86357 0.85939 0.89489 0.89799 0.83781 0.90731 0.90105 0.90367 0.90537 0.95672 0.91257 0.91971 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.46 8.45 -34.44 -0.29 -14.75 16 8 H 0.05 1.49 7.08 -52.48 -0.37 1.11 16 9 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 10 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 11 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 12 C 0.06 0.87 5.46 -3.84 -0.02 0.85 16 13 N -0.53 -7.78 4.65 -236.12 -1.10 -8.88 16 14 C 0.09 1.11 5.12 -4.98 -0.03 1.08 16 15 C -0.07 -0.83 4.88 -104.70 -0.51 -1.35 16 16 C -0.11 -1.28 7.88 -39.65 -0.31 -1.59 16 17 C -0.12 -1.27 9.66 -39.50 -0.38 -1.66 16 18 C -0.09 -0.88 5.77 -104.60 -0.60 -1.48 16 19 C -0.12 -1.27 5.79 -104.62 -0.61 -1.88 16 20 C -0.09 -1.03 9.31 -39.48 -0.37 -1.39 16 21 C 0.10 0.84 6.34 -5.15 -0.03 0.81 16 22 N -0.68 -5.70 6.96 -115.16 -0.80 -6.51 16 23 C 0.05 0.40 6.62 -3.73 -0.02 0.37 16 24 C -0.12 -0.92 5.82 -27.93 -0.16 -1.09 16 25 C 0.05 0.84 5.16 -3.83 -0.02 0.82 16 26 C -0.10 -1.90 5.15 -26.65 -0.14 -2.04 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.84 8.02 -51.93 -0.42 0.42 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 36 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 37 H 0.12 1.29 7.96 -52.49 -0.42 0.87 16 38 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.34 2.80 8.74 -39.29 -0.34 2.45 16 43 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 1.06 5.75 -51.93 -0.30 0.76 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.07 1.47 7.05 -51.93 -0.37 1.10 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -30.58 383.56 -13.40 -43.98 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.94 Total: 0.41 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -4.06 Total: -25.13 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -1.16 Total: -41.84 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.58 -13.40 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579722875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.030 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds