Wall clock time and date at job start Tue Mar 31 2020 11:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38234 * 119.99921 * 2 1 4 4 C 1.50706 * 119.99798 * 359.97438 * 3 2 1 5 5 C 1.38233 * 120.00036 * 180.25690 * 3 2 1 6 6 C 1.50693 * 120.00206 * 179.72883 * 5 3 2 7 7 C 1.38237 * 119.99743 * 359.53575 * 5 3 2 8 8 C 1.50693 * 119.99828 * 180.21305 * 7 5 3 9 9 N 1.46901 * 109.47376 * 270.20646 * 8 7 5 10 10 C 1.46900 * 111.00352 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47515 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47596 * 305.00861 * 11 10 9 13 13 C 1.47202 * 109.47029 * 65.00297 * 11 10 9 14 14 N 7.54586 * 142.38898 * 298.92064 * 2 1 3 15 15 C 1.53001 * 109.47425 * 185.00185 * 11 10 9 16 16 C 1.50701 * 109.46925 * 175.00078 * 15 11 10 17 17 H 1.08003 * 119.99921 * 0.02562 * 16 15 11 18 18 C 1.37879 * 119.99986 * 179.97438 * 16 15 11 19 19 N 1.31517 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00212 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47067 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46973 * 120.00360 * 20 18 16 23 23 H 1.48505 * 109.46884 * 240.00352 * 20 18 16 24 24 C 1.38234 * 120.00105 * 0.42118 * 7 5 3 25 25 C 1.50696 * 120.00224 * 179.78727 * 24 7 5 26 26 C 1.38235 * 119.99850 * 179.97438 * 2 1 3 27 27 C 1.50695 * 119.99936 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.46911 * 89.99848 * 1 2 3 29 29 H 1.09005 * 109.46936 * 209.99595 * 1 2 3 30 30 H 1.09003 * 109.46966 * 329.99510 * 1 2 3 31 31 H 1.08999 * 109.47015 * 90.00132 * 4 3 2 32 32 H 1.09000 * 109.46646 * 209.99285 * 4 3 2 33 33 H 1.09000 * 109.47248 * 330.00002 * 4 3 2 34 34 H 1.09000 * 109.47363 * 89.99989 * 6 5 3 35 35 H 1.08999 * 109.47395 * 210.00543 * 6 5 3 36 36 H 1.09006 * 109.46991 * 329.99845 * 6 5 3 37 37 H 1.08999 * 109.47794 * 30.20936 * 8 7 5 38 38 H 1.09005 * 109.47204 * 150.20861 * 8 7 5 39 39 H 1.00896 * 110.99925 * 303.95976 * 9 8 7 40 40 H 1.09003 * 109.47404 * 300.00459 * 10 9 8 41 41 H 1.09009 * 109.46833 * 60.00171 * 10 9 8 42 42 H 1.08992 * 109.46911 * 294.99995 * 15 11 10 43 43 H 1.08997 * 109.46948 * 55.00684 * 15 11 10 44 44 H 0.96998 * 120.00329 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47223 * 270.02638 * 25 24 7 46 46 H 1.09006 * 109.46956 * 30.02662 * 25 24 7 47 47 H 1.08998 * 109.47245 * 150.01956 * 25 24 7 48 48 H 1.09003 * 109.46962 * 90.00454 * 27 26 2 49 49 H 1.09005 * 109.47023 * 210.00322 * 27 26 2 50 50 H 1.08999 * 109.47784 * 330.00294 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 1.4446 2.5023 -0.0006 5 6 3.5805 1.1972 -0.0054 6 6 4.3340 2.5022 -0.0115 7 6 4.2717 0.0000 -0.0010 8 6 5.7787 0.0001 -0.0020 9 7 6.2675 -0.0005 -1.3873 10 6 7.7359 0.0002 -1.4275 11 6 8.2063 0.0002 -2.8833 12 1 7.7575 -0.8417 -3.4103 13 6 7.7986 1.2578 -3.5307 14 7 7.4847 2.2271 -4.0309 15 6 9.7306 -0.1249 -2.9268 16 6 10.1838 -0.2483 -4.3588 17 1 9.4573 -0.2381 -5.1579 18 6 11.5259 -0.3732 -4.6488 19 7 12.4106 -0.3852 -3.6757 20 14 12.0878 -0.5255 -6.4238 21 1 10.9062 -0.4847 -7.3222 22 1 12.9985 0.6002 -6.7530 23 1 12.8054 -1.8127 -6.6071 24 6 3.5806 -1.1971 -0.0001 25 6 4.3340 -2.5022 -0.0003 26 6 2.1982 -1.1972 0.0005 27 6 1.4447 -2.5022 0.0017 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.2626 2.8171 1.0269 32 1 2.0340 3.2618 -0.5143 33 1 0.4924 2.3718 -0.5147 34 1 4.5197 2.8195 1.0146 35 1 5.2844 2.3707 -0.5288 36 1 3.7429 3.2606 -0.5250 37 1 6.1424 0.8902 0.5112 38 1 6.1424 -0.8898 0.5119 39 1 5.8916 -0.7820 -1.9031 40 1 8.1128 0.8905 -0.9242 41 1 8.1136 -0.8895 -0.9233 42 1 10.1807 0.7606 -2.4784 43 1 10.0385 -1.0104 -2.3708 44 1 13.3548 -0.4727 -3.8797 45 1 4.5154 -2.8170 -1.0279 46 1 5.2867 -2.3718 0.5133 47 1 3.7452 -3.2618 0.5139 48 1 1.2627 -2.8176 -1.0257 49 1 2.0340 -3.2615 0.5159 50 1 0.4924 -2.3716 0.5157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584448085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:33 Heat of formation + Delta-G solvation = 17.768337 kcal Electronic energy + Delta-G solvation = -25816.410747 eV Core-core repulsion = 22421.124755 eV Total energy + Delta-G solvation = -3395.285992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44194 -37.40910 -35.75067 -35.07749 -34.10726 -33.17472 -31.35890 -29.83004 -29.34469 -28.29654 -27.10112 -25.69244 -24.27165 -23.69945 -22.43922 -21.72922 -19.58191 -19.53570 -17.29010 -16.83545 -16.40849 -15.29014 -15.20679 -14.73409 -14.64770 -14.34134 -14.16403 -13.92611 -13.66984 -13.43998 -13.40636 -13.16117 -12.87754 -12.77099 -12.73088 -12.61447 -12.55675 -12.27803 -12.08177 -12.04602 -11.94401 -11.72311 -11.61391 -11.32272 -11.15525 -11.05141 -10.94278 -10.72570 -10.68907 -10.66311 -10.47430 -10.23175 -9.55237 -9.21644 -8.46943 -8.41791 -8.27816 -8.17972 -6.09861 -4.12772 1.28078 1.33754 3.28345 3.36671 3.41511 3.52630 3.77921 3.87231 4.37598 4.47691 4.59983 4.64736 4.78010 4.82796 4.91777 4.93984 4.95559 5.23491 5.24294 5.28443 5.29931 5.35607 5.39964 5.41659 5.43912 5.50354 5.52831 5.54700 5.60916 5.65569 5.69024 5.72397 5.77662 5.81692 5.85938 5.91492 6.02815 6.06485 6.24867 6.36567 6.39882 6.49640 6.54023 6.56275 6.74090 7.02818 7.13004 7.42363 7.50215 7.54157 7.85843 8.23325 8.61498 8.92372 9.52785 11.01094 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.002644 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.384736 B =10585.562927 C =11129.587892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.116 4.116 5 C -0.058 4.058 6 C -0.122 4.122 7 C -0.079 4.079 8 C 0.095 3.905 9 N -0.685 5.685 10 C 0.066 3.934 11 C 0.010 3.990 12 H 0.098 0.902 13 C 0.256 3.744 14 N -0.479 5.479 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.077 4.077 25 C -0.122 4.122 26 C -0.094 4.094 27 C -0.117 4.117 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.341 0.659 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.026 0.974 43 H 0.037 0.963 44 H 0.262 0.738 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.417 -3.221 13.022 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.172 4.172 5 C -0.059 4.059 6 C -0.178 4.178 7 C -0.080 4.080 8 C -0.033 4.033 9 N -0.316 5.316 10 C -0.064 4.064 11 C -0.012 4.012 12 H 0.116 0.884 13 C -0.061 4.061 14 N -0.156 5.156 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.078 4.078 25 C -0.178 4.178 26 C -0.094 4.094 27 C -0.173 4.173 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.159 0.841 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.741 -1.084 12.232 25.845 hybrid contribution 0.809 -1.367 -0.589 1.694 sum -21.932 -2.450 11.644 24.952 Atomic orbital electron populations 1.20859 0.91735 1.02533 1.02119 1.19487 0.95489 0.92091 1.01281 1.19520 0.93062 0.94659 1.02168 1.20852 0.99825 0.94617 1.01948 1.19523 0.92613 0.95014 0.98747 1.20922 1.01179 0.93922 1.01795 1.19427 0.94987 0.91964 1.01599 1.20894 0.90374 1.01348 0.90671 1.60541 1.08416 1.50373 1.12285 1.22095 0.86355 1.01783 0.96179 1.19205 1.01231 0.88509 0.92283 0.88413 1.28798 0.90802 0.94247 0.92292 1.80935 1.11684 1.12520 1.10424 1.19167 0.84660 0.98631 0.98241 1.21187 0.92301 1.50711 0.92106 0.92458 1.24957 0.96810 0.94989 0.97257 1.69947 1.01651 1.50065 1.31406 0.86540 0.78832 0.77676 0.85075 1.19664 1.20967 1.20863 1.19530 0.92924 0.94762 1.00584 1.20938 1.00044 0.94302 1.02549 1.19441 0.92918 0.94644 1.02393 1.20879 0.99774 0.94453 1.02181 0.91384 0.91420 0.91628 0.91527 0.91151 0.91723 0.91708 0.89966 0.91568 0.90204 0.93978 0.84053 0.90477 0.93268 0.95554 0.94471 0.92862 0.90998 0.91261 0.91373 0.91372 0.91400 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.79 36.01 0.32 -0.60 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.09 -1.06 5.88 -104.62 -0.62 -1.68 16 4 C -0.12 -1.04 8.79 36.01 0.32 -0.72 16 5 C -0.06 -0.71 5.88 -104.63 -0.62 -1.33 16 6 C -0.12 -1.40 8.78 36.00 0.32 -1.08 16 7 C -0.08 -0.96 5.39 -104.63 -0.56 -1.52 16 8 C 0.10 1.11 4.59 -4.98 -0.02 1.09 16 9 N -0.68 -9.07 6.14 -115.06 -0.71 -9.77 16 10 C 0.07 0.95 5.05 -3.83 -0.02 0.94 16 11 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 13 C 0.26 5.38 13.66 -20.79 -0.28 5.10 16 14 N -0.48 -10.99 18.53 42.12 0.78 -10.21 16 15 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 16 C -0.52 -13.99 8.60 -34.44 -0.30 -14.29 16 17 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.08 -0.86 5.88 -104.63 -0.62 -1.48 16 25 C -0.12 -1.10 9.20 36.00 0.33 -0.77 16 26 C -0.09 -1.00 5.88 -104.63 -0.62 -1.61 16 27 C -0.12 -0.93 9.20 36.00 0.33 -0.59 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.46 5.95 -51.93 -0.31 0.15 16 30 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.63 5.94 -51.93 -0.31 0.32 16 33 H 0.06 0.51 6.70 -51.93 -0.35 0.16 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.08 6.67 -51.93 -0.35 0.74 16 36 H 0.07 0.71 5.94 -51.93 -0.31 0.41 16 37 H 0.08 0.94 6.72 -51.93 -0.35 0.59 16 38 H 0.04 0.45 5.95 -51.93 -0.31 0.14 16 39 H 0.34 4.31 8.72 -39.29 -0.34 3.96 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.61 5.95 -51.93 -0.31 0.30 16 47 H 0.07 0.53 5.95 -51.93 -0.31 0.22 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 50 H 0.07 0.45 5.95 -51.93 -0.31 0.14 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -30.88 392.90 -9.35 -40.23 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.96 Total: 0.17 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.09 Total: -17.88 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.81 Total: -44.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.88 -9.35 -40.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584448085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.995 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds