Wall clock time and date at job start Tue Mar 31 2020 11:26:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.50703 * 112.84479 * 2 1
4 4 C 1.38227 * 120.00036 * 50.33876 * 3 2 1
5 5 C 1.38235 * 119.99798 * 179.72077 * 4 3 2
6 6 C 1.38237 * 120.00292 * 0.25840 * 5 4 3
7 7 C 1.38235 * 119.99484 * 0.02562 * 6 5 4
8 8 C 1.38228 * 120.00476 * 359.97438 * 7 6 5
9 9 C 1.53780 * 113.61658 * 131.19814 * 2 1 3
10 10 C 1.53954 * 87.01814 * 89.22720 * 9 2 1
11 11 N 1.46899 * 113.74052 * 139.94658 * 10 9 2
12 12 C 1.46893 * 111.00405 * 107.39928 * 11 10 9
13 13 C 1.53039 * 109.46345 * 275.02670 * 12 11 10
14 14 C 1.53197 * 109.31441 * 178.59680 * 13 12 11
15 15 N 1.46923 * 108.75909 * 54.65797 * 14 13 12
16 16 C 1.36942 * 120.62823 * 126.36253 * 15 14 13
17 17 H 1.08001 * 120.00029 * 208.01324 * 16 15 14
18 18 C 1.38808 * 120.00092 * 28.02117 * 16 15 14
19 19 N 1.31622 * 120.00002 * 17.52009 * 18 16 15
20 20 Si 1.86796 * 120.00040 * 197.52418 * 18 16 15
21 21 H 1.48505 * 109.46941 * 94.06328 * 20 18 16
22 22 H 1.48500 * 109.47063 * 214.06078 * 20 18 16
23 23 H 1.48496 * 109.47413 * 334.06381 * 20 18 16
24 24 C 1.46933 * 118.74197 * 306.37809 * 15 14 13
25 25 C 1.53040 * 109.46034 * 154.96976 * 12 11 10
26 26 C 1.53778 * 113.61117 * 228.80744 * 2 1 3
27 27 H 1.08991 * 109.47051 * 69.66437 * 1 2 3
28 28 H 1.08998 * 109.46840 * 189.66707 * 1 2 3
29 29 H 1.08998 * 109.47044 * 309.66349 * 1 2 3
30 30 H 1.07998 * 120.00413 * 359.97438 * 4 3 2
31 31 H 1.08005 * 120.00198 * 180.27287 * 5 4 3
32 32 H 1.07997 * 120.00152 * 180.02562 * 6 5 4
33 33 H 1.08009 * 119.99633 * 179.97438 * 7 6 5
34 34 H 1.08002 * 120.00425 * 179.97438 * 8 7 6
35 35 H 1.08997 * 113.61515 * 203.75340 * 9 2 1
36 36 H 1.08998 * 113.61449 * 334.65057 * 9 2 1
37 37 H 1.09005 * 113.53747 * 270.81049 * 10 9 2
38 38 H 1.00903 * 110.99818 * 343.44472 * 11 10 9
39 39 H 1.09007 * 109.46189 * 35.00239 * 12 11 10
40 40 H 1.09000 * 109.49666 * 298.56696 * 13 12 11
41 41 H 1.09003 * 109.49238 * 58.66472 * 13 12 11
42 42 H 1.09000 * 109.59686 * 294.87360 * 14 13 12
43 43 H 1.08996 * 109.70423 * 174.50586 * 14 13 12
44 44 H 0.97002 * 120.00095 * 180.02562 * 19 18 16
45 45 H 1.08991 * 109.58515 * 293.82707 * 24 15 14
46 46 H 1.09001 * 109.69963 * 173.46760 * 24 15 14
47 47 H 1.08994 * 109.49904 * 301.33743 * 25 12 11
48 48 H 1.08999 * 109.49686 * 61.40936 * 25 12 11
49 49 H 1.08999 * 113.62020 * 25.34540 * 26 2 1
50 50 H 1.08999 * 113.61099 * 156.24804 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.1152 1.3888 0.0000
4 6 1.6794 2.3224 0.9215
5 6 2.2202 3.5945 0.9252
6 6 3.1930 3.9347 0.0039
7 6 3.6246 3.0029 -0.9214
8 6 3.0838 1.7308 -0.9252
9 6 2.1462 -0.9281 1.0602
10 6 2.0951 -2.0419 -0.0014
11 7 3.2793 -2.9111 -0.0040
12 6 2.9622 -4.2348 0.5483
13 6 3.0776 -4.1917 2.0738
14 6 2.7122 -5.5640 2.6484
15 7 3.5543 -6.5837 2.0084
16 6 4.2942 -7.4529 2.7650
17 1 5.2088 -7.8695 2.3695
18 6 3.8687 -7.7985 4.0403
19 7 2.6199 -7.5858 4.3976
20 14 5.0684 -8.5653 5.2494
21 1 5.6627 -7.5020 6.0988
22 1 4.3501 -9.5410 6.1080
23 1 6.1462 -9.2624 4.5027
24 6 3.5878 -6.6531 0.5411
25 6 3.9430 -5.2685 -0.0099
26 6 2.1460 -0.9280 -1.0603
27 1 -0.3633 0.3571 -0.9635
28 1 -0.3633 -1.0131 0.1726
29 1 -0.3633 0.6559 0.7911
30 1 0.9193 2.0567 1.6413
31 1 1.8830 4.3227 1.6481
32 1 3.6159 4.9285 0.0071
33 1 4.3844 3.2688 -1.6416
34 1 3.4207 1.0028 -1.6484
35 1 3.1586 -0.6477 1.3506
36 1 1.4941 -1.1080 1.9149
37 1 1.1595 -2.6013 -0.0007
38 1 4.0430 -2.4833 0.4980
39 1 1.9455 -4.5109 0.2687
40 1 4.1004 -3.9401 2.3543
41 1 2.3956 -3.4388 2.4690
42 1 1.6626 -5.7774 2.4462
43 1 2.8856 -5.5698 3.7245
44 1 2.3226 -7.8270 5.2888
45 1 2.6097 -6.9553 0.1672
46 1 4.3395 -7.3762 0.2245
47 1 3.8772 -5.2821 -1.0978
48 1 4.9576 -5.0064 0.2901
49 1 1.4940 -1.1079 -1.9150
50 1 3.1585 -0.6476 -1.3507
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000590956318.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:14
Heat of formation + Delta-G solvation = 60.131601 kcal
Electronic energy + Delta-G solvation = -26252.585550 eV
Core-core repulsion = 22859.136567 eV
Total energy + Delta-G solvation = -3393.448983 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.205 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.65460 -38.57365 -37.42644 -34.42661 -32.18469 -31.19627 -30.80474 -29.80368
-29.21201 -27.87621 -25.87335 -24.69054 -23.67531 -22.45936 -22.04130 -21.50710
-21.01081 -19.30867 -18.38813 -17.27294 -16.78363 -15.68655 -15.42535 -15.12340
-14.78155 -14.68533 -14.20962 -13.81255 -13.66396 -13.57802 -13.46127 -13.31152
-13.01031 -12.98559 -12.71054 -12.36331 -12.21901 -12.10495 -11.61197 -11.52279
-11.46467 -11.29070 -11.08489 -10.81816 -10.71347 -10.60718 -10.45324 -10.35178
-10.26667 -10.06478 -9.96270 -9.60825 -9.42528 -9.08600 -8.81335 -8.47393
-7.96229 -6.64273 -5.76891 -3.18744 1.20040 1.23598 3.38600 3.45719
3.47163 3.61052 4.27720 4.37527 4.51599 4.52835 4.70298 4.80018
4.82430 4.91751 4.96791 4.99226 5.27586 5.33897 5.37047 5.42695
5.50118 5.51613 5.61326 5.64410 5.72766 5.76573 5.77072 5.86097
5.88604 5.90357 5.99549 6.00280 6.15714 6.19410 6.22004 6.35041
6.36935 6.37530 6.51854 6.57405 6.60191 6.66813 6.71849 6.84518
6.86544 7.04591 7.36292 7.46767 7.64008 7.72185 7.82050 8.47624
9.23822 9.87761 10.44751 11.31569
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.022155 B = 0.002574 C = 0.002503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1263.531756 B =10875.184122 C =11184.148367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.050 4.050
3 C -0.056 4.056
4 C -0.117 4.117
5 C -0.120 4.120
6 C -0.130 4.130
7 C -0.119 4.119
8 C -0.120 4.120
9 C -0.150 4.150
10 C 0.074 3.926
11 N -0.677 5.677
12 C 0.095 3.905
13 C -0.165 4.165
14 C 0.175 3.825
15 N -0.593 5.593
16 C -0.250 4.250
17 H 0.065 0.935
18 C 0.000 4.000
19 N -0.904 5.904
20 Si 0.901 3.099
21 H -0.288 1.288
22 H -0.292 1.292
23 H -0.278 1.278
24 C 0.145 3.855
25 C -0.118 4.118
26 C -0.122 4.122
27 H 0.058 0.942
28 H 0.063 0.937
29 H 0.058 0.942
30 H 0.120 0.880
31 H 0.119 0.881
32 H 0.118 0.882
33 H 0.119 0.881
34 H 0.127 0.873
35 H 0.082 0.918
36 H 0.068 0.932
37 H 0.094 0.906
38 H 0.339 0.661
39 H 0.067 0.933
40 H 0.054 0.946
41 H 0.044 0.956
42 H 0.015 0.985
43 H 0.085 0.915
44 H 0.253 0.747
45 H 0.016 0.984
46 H 0.054 0.946
47 H 0.055 0.945
48 H 0.055 0.945
49 H 0.068 0.932
50 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.639 21.215 -10.192 23.684
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.050 4.050
3 C -0.056 4.056
4 C -0.135 4.135
5 C -0.139 4.139
6 C -0.148 4.148
7 C -0.137 4.137
8 C -0.137 4.137
9 C -0.189 4.189
10 C -0.037 4.037
11 N -0.305 5.305
12 C -0.014 4.014
13 C -0.206 4.206
14 C 0.048 3.952
15 N -0.315 5.315
16 C -0.380 4.380
17 H 0.083 0.917
18 C -0.198 4.198
19 N -0.548 5.548
20 Si 0.731 3.269
21 H -0.215 1.215
22 H -0.218 1.218
23 H -0.204 1.204
24 C 0.018 3.982
25 C -0.158 4.158
26 C -0.160 4.160
27 H 0.077 0.923
28 H 0.082 0.918
29 H 0.077 0.923
30 H 0.138 0.862
31 H 0.137 0.863
32 H 0.136 0.864
33 H 0.137 0.863
34 H 0.145 0.855
35 H 0.100 0.900
36 H 0.087 0.913
37 H 0.112 0.888
38 H 0.158 0.842
39 H 0.086 0.914
40 H 0.073 0.927
41 H 0.063 0.937
42 H 0.033 0.967
43 H 0.103 0.897
44 H 0.063 0.937
45 H 0.034 0.966
46 H 0.072 0.928
47 H 0.073 0.927
48 H 0.074 0.926
49 H 0.086 0.914
50 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -2.790 20.925 -10.706 23.669
hybrid contribution 0.486 -0.018 1.772 1.837
sum -2.304 20.906 -8.934 22.852
Atomic orbital electron populations
1.21610 0.92435 1.02250 1.01961 1.20668 0.95395 0.90181 0.98804
1.19700 0.96022 0.94745 0.95147 1.21009 1.00274 0.93245 0.98929
1.21128 0.97256 0.96541 0.98927 1.21121 0.98045 0.99454 0.96197
1.21152 0.99914 0.93742 0.98934 1.21218 0.96936 0.96555 0.99032
1.23819 1.01242 0.96582 0.97302 1.22982 0.94450 0.91473 0.94766
1.60635 1.07156 1.03687 1.59023 1.21577 0.98900 0.87920 0.92996
1.22861 1.00659 1.00986 0.96058 1.20682 0.92299 0.83564 0.98614
1.44068 1.52948 1.35137 0.99392 1.19220 1.01198 1.20593 0.96942
0.91684 1.25038 0.95475 0.99545 0.99734 1.70045 1.13745 1.51608
1.19451 0.86284 0.80575 0.78623 0.81371 1.21548 1.21806 1.20374
1.20923 0.97965 0.93641 0.85696 1.21985 0.98733 0.96260 0.98791
1.23287 1.01262 0.94778 0.96648 0.92253 0.91840 0.92318 0.86244
0.86342 0.86437 0.86263 0.85509 0.89982 0.91303 0.88804 0.84221
0.91447 0.92750 0.93707 0.96655 0.89700 0.93724 0.96642 0.92780
0.92680 0.92609 0.91367 0.89294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.13 8.91 37.16 0.33 -0.80 16
2 C -0.05 -0.49 1.17 -154.84 -0.18 -0.67 16
3 C -0.06 -0.57 5.02 -104.62 -0.53 -1.10 16
4 C -0.12 -1.14 9.23 -39.59 -0.37 -1.50 16
5 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16
6 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16
7 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16
8 C -0.12 -1.18 9.19 -39.58 -0.36 -1.54 16
9 C -0.15 -1.69 6.79 -25.83 -0.18 -1.86 16
10 C 0.07 0.89 3.63 -66.81 -0.24 0.65 16
11 N -0.68 -9.45 6.37 -98.75 -0.63 -10.08 16
12 C 0.10 1.60 2.42 -67.68 -0.16 1.43 16
13 C -0.16 -3.12 5.33 -26.61 -0.14 -3.26 16
14 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16
15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16
16 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16
17 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16
18 C 0.00 0.01 4.90 -17.43 -0.09 -0.07 16
19 N -0.90 -26.48 11.22 55.49 0.62 -25.85 16
20 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16
21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16
24 C 0.14 3.08 6.51 -3.71 -0.02 3.06 16
25 C -0.12 -2.11 5.69 -26.61 -0.15 -2.26 16
26 C -0.12 -1.26 6.46 -25.92 -0.17 -1.43 16
27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16
29 H 0.06 0.49 6.91 -51.93 -0.36 0.13 16
30 H 0.12 1.04 7.15 -52.49 -0.38 0.67 16
31 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16
32 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16
33 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16
34 H 0.13 1.14 5.80 -52.49 -0.30 0.84 16
35 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16
36 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16
37 H 0.09 1.19 6.98 -51.93 -0.36 0.83 16
38 H 0.34 4.69 7.96 -39.29 -0.31 4.38 16
39 H 0.07 1.18 7.46 -51.92 -0.39 0.79 16
40 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16
41 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16
42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16
43 H 0.08 2.29 6.06 -51.93 -0.31 1.98 16
44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16
46 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16
47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
49 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16
50 H 0.09 0.93 6.01 -51.93 -0.31 0.62 16
LS Contribution 382.59 15.07 5.77 5.77
Total: -1.00 -29.38 382.59 -11.94 -41.31
By element:
Atomic # 1 Polarization: 12.77 SS G_CDS: -8.54 Total: 4.23 kcal
Atomic # 6 Polarization: -13.13 SS G_CDS: -3.61 Total: -16.75 kcal
Atomic # 7 Polarization: -50.91 SS G_CDS: -0.52 Total: -51.43 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -29.38 -11.94 -41.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590956318.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.445 kcal
(2) G-P(sol) polarization free energy of solvation -29.378 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.067 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.132 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds