Wall clock time and date at job start Tue Mar 31 2020 11:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50703 * 112.84479 * 2 1 4 4 C 1.38227 * 120.00036 * 50.33876 * 3 2 1 5 5 C 1.38235 * 119.99798 * 179.72077 * 4 3 2 6 6 C 1.38237 * 120.00292 * 0.25840 * 5 4 3 7 7 C 1.38235 * 119.99484 * 0.02562 * 6 5 4 8 8 C 1.38228 * 120.00476 * 359.97438 * 7 6 5 9 9 C 1.53780 * 113.61658 * 131.19814 * 2 1 3 10 10 C 1.53954 * 87.01814 * 89.22720 * 9 2 1 11 11 N 1.46899 * 113.74052 * 139.94658 * 10 9 2 12 12 C 1.46893 * 111.00405 * 107.39928 * 11 10 9 13 13 C 1.53039 * 109.46345 * 275.02670 * 12 11 10 14 14 C 1.53197 * 109.31441 * 178.59680 * 13 12 11 15 15 N 1.46923 * 108.75909 * 54.65797 * 14 13 12 16 16 C 1.36942 * 120.62823 * 126.36253 * 15 14 13 17 17 H 1.08001 * 120.00029 * 208.01324 * 16 15 14 18 18 C 1.38808 * 120.00092 * 28.02117 * 16 15 14 19 19 N 1.31622 * 120.00002 * 17.52009 * 18 16 15 20 20 Si 1.86796 * 120.00040 * 197.52418 * 18 16 15 21 21 H 1.48505 * 109.46941 * 94.06328 * 20 18 16 22 22 H 1.48500 * 109.47063 * 214.06078 * 20 18 16 23 23 H 1.48496 * 109.47413 * 334.06381 * 20 18 16 24 24 C 1.46933 * 118.74197 * 306.37809 * 15 14 13 25 25 C 1.53040 * 109.46034 * 154.96976 * 12 11 10 26 26 C 1.53778 * 113.61117 * 228.80744 * 2 1 3 27 27 H 1.08991 * 109.47051 * 69.66437 * 1 2 3 28 28 H 1.08998 * 109.46840 * 189.66707 * 1 2 3 29 29 H 1.08998 * 109.47044 * 309.66349 * 1 2 3 30 30 H 1.07998 * 120.00413 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.00198 * 180.27287 * 5 4 3 32 32 H 1.07997 * 120.00152 * 180.02562 * 6 5 4 33 33 H 1.08009 * 119.99633 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.00425 * 179.97438 * 8 7 6 35 35 H 1.08997 * 113.61515 * 203.75340 * 9 2 1 36 36 H 1.08998 * 113.61449 * 334.65057 * 9 2 1 37 37 H 1.09005 * 113.53747 * 270.81049 * 10 9 2 38 38 H 1.00903 * 110.99818 * 343.44472 * 11 10 9 39 39 H 1.09007 * 109.46189 * 35.00239 * 12 11 10 40 40 H 1.09000 * 109.49666 * 298.56696 * 13 12 11 41 41 H 1.09003 * 109.49238 * 58.66472 * 13 12 11 42 42 H 1.09000 * 109.59686 * 294.87360 * 14 13 12 43 43 H 1.08996 * 109.70423 * 174.50586 * 14 13 12 44 44 H 0.97002 * 120.00095 * 180.02562 * 19 18 16 45 45 H 1.08991 * 109.58515 * 293.82707 * 24 15 14 46 46 H 1.09001 * 109.69963 * 173.46760 * 24 15 14 47 47 H 1.08994 * 109.49904 * 301.33743 * 25 12 11 48 48 H 1.08999 * 109.49686 * 61.40936 * 25 12 11 49 49 H 1.08999 * 113.62020 * 25.34540 * 26 2 1 50 50 H 1.08999 * 113.61099 * 156.24804 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 6 1.6794 2.3224 0.9215 5 6 2.2202 3.5945 0.9252 6 6 3.1930 3.9347 0.0039 7 6 3.6246 3.0029 -0.9214 8 6 3.0838 1.7308 -0.9252 9 6 2.1462 -0.9281 1.0602 10 6 2.0951 -2.0419 -0.0014 11 7 3.2793 -2.9111 -0.0040 12 6 2.9622 -4.2348 0.5483 13 6 3.0776 -4.1917 2.0738 14 6 2.7122 -5.5640 2.6484 15 7 3.5543 -6.5837 2.0084 16 6 4.2942 -7.4529 2.7650 17 1 5.2088 -7.8695 2.3695 18 6 3.8687 -7.7985 4.0403 19 7 2.6199 -7.5858 4.3976 20 14 5.0684 -8.5653 5.2494 21 1 5.6627 -7.5020 6.0988 22 1 4.3501 -9.5410 6.1080 23 1 6.1462 -9.2624 4.5027 24 6 3.5878 -6.6531 0.5411 25 6 3.9430 -5.2685 -0.0099 26 6 2.1460 -0.9280 -1.0603 27 1 -0.3633 0.3571 -0.9635 28 1 -0.3633 -1.0131 0.1726 29 1 -0.3633 0.6559 0.7911 30 1 0.9193 2.0567 1.6413 31 1 1.8830 4.3227 1.6481 32 1 3.6159 4.9285 0.0071 33 1 4.3844 3.2688 -1.6416 34 1 3.4207 1.0028 -1.6484 35 1 3.1586 -0.6477 1.3506 36 1 1.4941 -1.1080 1.9149 37 1 1.1595 -2.6013 -0.0007 38 1 4.0430 -2.4833 0.4980 39 1 1.9455 -4.5109 0.2687 40 1 4.1004 -3.9401 2.3543 41 1 2.3956 -3.4388 2.4690 42 1 1.6626 -5.7774 2.4462 43 1 2.8856 -5.5698 3.7245 44 1 2.3226 -7.8270 5.2888 45 1 2.6097 -6.9553 0.1672 46 1 4.3395 -7.3762 0.2245 47 1 3.8772 -5.2821 -1.0978 48 1 4.9576 -5.0064 0.2901 49 1 1.4940 -1.1079 -1.9150 50 1 3.1585 -0.6476 -1.3507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590956318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:14 Heat of formation + Delta-G solvation = 60.131601 kcal Electronic energy + Delta-G solvation = -26252.585550 eV Core-core repulsion = 22859.136567 eV Total energy + Delta-G solvation = -3393.448983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.65460 -38.57365 -37.42644 -34.42661 -32.18469 -31.19627 -30.80474 -29.80368 -29.21201 -27.87621 -25.87335 -24.69054 -23.67531 -22.45936 -22.04130 -21.50710 -21.01081 -19.30867 -18.38813 -17.27294 -16.78363 -15.68655 -15.42535 -15.12340 -14.78155 -14.68533 -14.20962 -13.81255 -13.66396 -13.57802 -13.46127 -13.31152 -13.01031 -12.98559 -12.71054 -12.36331 -12.21901 -12.10495 -11.61197 -11.52279 -11.46467 -11.29070 -11.08489 -10.81816 -10.71347 -10.60718 -10.45324 -10.35178 -10.26667 -10.06478 -9.96270 -9.60825 -9.42528 -9.08600 -8.81335 -8.47393 -7.96229 -6.64273 -5.76891 -3.18744 1.20040 1.23598 3.38600 3.45719 3.47163 3.61052 4.27720 4.37527 4.51599 4.52835 4.70298 4.80018 4.82430 4.91751 4.96791 4.99226 5.27586 5.33897 5.37047 5.42695 5.50118 5.51613 5.61326 5.64410 5.72766 5.76573 5.77072 5.86097 5.88604 5.90357 5.99549 6.00280 6.15714 6.19410 6.22004 6.35041 6.36935 6.37530 6.51854 6.57405 6.60191 6.66813 6.71849 6.84518 6.86544 7.04591 7.36292 7.46767 7.64008 7.72185 7.82050 8.47624 9.23822 9.87761 10.44751 11.31569 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.002574 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.531756 B =10875.184122 C =11184.148367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.050 4.050 3 C -0.056 4.056 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.130 4.130 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.150 4.150 10 C 0.074 3.926 11 N -0.677 5.677 12 C 0.095 3.905 13 C -0.165 4.165 14 C 0.175 3.825 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.145 3.855 25 C -0.118 4.118 26 C -0.122 4.122 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.339 0.661 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.015 0.985 43 H 0.085 0.915 44 H 0.253 0.747 45 H 0.016 0.984 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 21.215 -10.192 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.050 4.050 3 C -0.056 4.056 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.148 4.148 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.189 4.189 10 C -0.037 4.037 11 N -0.305 5.305 12 C -0.014 4.014 13 C -0.206 4.206 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.018 3.982 25 C -0.158 4.158 26 C -0.160 4.160 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.790 20.925 -10.706 23.669 hybrid contribution 0.486 -0.018 1.772 1.837 sum -2.304 20.906 -8.934 22.852 Atomic orbital electron populations 1.21610 0.92435 1.02250 1.01961 1.20668 0.95395 0.90181 0.98804 1.19700 0.96022 0.94745 0.95147 1.21009 1.00274 0.93245 0.98929 1.21128 0.97256 0.96541 0.98927 1.21121 0.98045 0.99454 0.96197 1.21152 0.99914 0.93742 0.98934 1.21218 0.96936 0.96555 0.99032 1.23819 1.01242 0.96582 0.97302 1.22982 0.94450 0.91473 0.94766 1.60635 1.07156 1.03687 1.59023 1.21577 0.98900 0.87920 0.92996 1.22861 1.00659 1.00986 0.96058 1.20682 0.92299 0.83564 0.98614 1.44068 1.52948 1.35137 0.99392 1.19220 1.01198 1.20593 0.96942 0.91684 1.25038 0.95475 0.99545 0.99734 1.70045 1.13745 1.51608 1.19451 0.86284 0.80575 0.78623 0.81371 1.21548 1.21806 1.20374 1.20923 0.97965 0.93641 0.85696 1.21985 0.98733 0.96260 0.98791 1.23287 1.01262 0.94778 0.96648 0.92253 0.91840 0.92318 0.86244 0.86342 0.86437 0.86263 0.85509 0.89982 0.91303 0.88804 0.84221 0.91447 0.92750 0.93707 0.96655 0.89700 0.93724 0.96642 0.92780 0.92680 0.92609 0.91367 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.91 37.16 0.33 -0.80 16 2 C -0.05 -0.49 1.17 -154.84 -0.18 -0.67 16 3 C -0.06 -0.57 5.02 -104.62 -0.53 -1.10 16 4 C -0.12 -1.14 9.23 -39.59 -0.37 -1.50 16 5 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 6 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 7 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 8 C -0.12 -1.18 9.19 -39.58 -0.36 -1.54 16 9 C -0.15 -1.69 6.79 -25.83 -0.18 -1.86 16 10 C 0.07 0.89 3.63 -66.81 -0.24 0.65 16 11 N -0.68 -9.45 6.37 -98.75 -0.63 -10.08 16 12 C 0.10 1.60 2.42 -67.68 -0.16 1.43 16 13 C -0.16 -3.12 5.33 -26.61 -0.14 -3.26 16 14 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 16 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 17 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 18 C 0.00 0.01 4.90 -17.43 -0.09 -0.07 16 19 N -0.90 -26.48 11.22 55.49 0.62 -25.85 16 20 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C 0.14 3.08 6.51 -3.71 -0.02 3.06 16 25 C -0.12 -2.11 5.69 -26.61 -0.15 -2.26 16 26 C -0.12 -1.26 6.46 -25.92 -0.17 -1.43 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 29 H 0.06 0.49 6.91 -51.93 -0.36 0.13 16 30 H 0.12 1.04 7.15 -52.49 -0.38 0.67 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.13 1.14 5.80 -52.49 -0.30 0.84 16 35 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 36 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.09 1.19 6.98 -51.93 -0.36 0.83 16 38 H 0.34 4.69 7.96 -39.29 -0.31 4.38 16 39 H 0.07 1.18 7.46 -51.92 -0.39 0.79 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 2.29 6.06 -51.93 -0.31 1.98 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 50 H 0.09 0.93 6.01 -51.93 -0.31 0.62 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -29.38 382.59 -11.94 -41.31 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.54 Total: 4.23 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -3.61 Total: -16.75 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.52 Total: -51.43 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.38 -11.94 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590956318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.445 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds