Wall clock time and date at job start Tue Mar 31 2020 11:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50703 * 112.84479 * 2 1 4 4 C 1.38227 * 120.00036 * 50.33876 * 3 2 1 5 5 C 1.38235 * 119.99798 * 179.72077 * 4 3 2 6 6 C 1.38237 * 120.00292 * 0.25840 * 5 4 3 7 7 C 1.38235 * 119.99484 * 0.02562 * 6 5 4 8 8 C 1.38228 * 120.00476 * 359.97438 * 7 6 5 9 9 C 1.53780 * 113.61658 * 131.19814 * 2 1 3 10 10 C 1.53954 * 87.01814 * 89.22720 * 9 2 1 11 11 N 1.46899 * 113.74052 * 139.94658 * 10 9 2 12 12 C 1.46893 * 111.00405 * 107.39928 * 11 10 9 13 13 C 1.53039 * 109.46345 * 275.02670 * 12 11 10 14 14 C 1.53197 * 109.31441 * 178.59680 * 13 12 11 15 15 N 1.46923 * 108.75909 * 54.65797 * 14 13 12 16 16 C 1.36942 * 120.62823 * 126.36253 * 15 14 13 17 17 H 1.08001 * 120.00029 * 208.01324 * 16 15 14 18 18 C 1.38808 * 120.00092 * 28.02117 * 16 15 14 19 19 N 1.31622 * 120.00002 * 17.52009 * 18 16 15 20 20 Si 1.86796 * 120.00040 * 197.52418 * 18 16 15 21 21 H 1.48505 * 109.46941 * 94.06328 * 20 18 16 22 22 H 1.48500 * 109.47063 * 214.06078 * 20 18 16 23 23 H 1.48496 * 109.47413 * 334.06381 * 20 18 16 24 24 C 1.46933 * 118.74197 * 306.37809 * 15 14 13 25 25 C 1.53040 * 109.46034 * 154.96976 * 12 11 10 26 26 C 1.53778 * 113.61117 * 228.80744 * 2 1 3 27 27 H 1.08991 * 109.47051 * 69.66437 * 1 2 3 28 28 H 1.08998 * 109.46840 * 189.66707 * 1 2 3 29 29 H 1.08998 * 109.47044 * 309.66349 * 1 2 3 30 30 H 1.07998 * 120.00413 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.00198 * 180.27287 * 5 4 3 32 32 H 1.07997 * 120.00152 * 180.02562 * 6 5 4 33 33 H 1.08009 * 119.99633 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.00425 * 179.97438 * 8 7 6 35 35 H 1.08997 * 113.61515 * 203.75340 * 9 2 1 36 36 H 1.08998 * 113.61449 * 334.65057 * 9 2 1 37 37 H 1.09005 * 113.53747 * 270.81049 * 10 9 2 38 38 H 1.00903 * 110.99818 * 343.44472 * 11 10 9 39 39 H 1.09007 * 109.46189 * 35.00239 * 12 11 10 40 40 H 1.09000 * 109.49666 * 298.56696 * 13 12 11 41 41 H 1.09003 * 109.49238 * 58.66472 * 13 12 11 42 42 H 1.09000 * 109.59686 * 294.87360 * 14 13 12 43 43 H 1.08996 * 109.70423 * 174.50586 * 14 13 12 44 44 H 0.97002 * 120.00095 * 180.02562 * 19 18 16 45 45 H 1.08991 * 109.58515 * 293.82707 * 24 15 14 46 46 H 1.09001 * 109.69963 * 173.46760 * 24 15 14 47 47 H 1.08994 * 109.49904 * 301.33743 * 25 12 11 48 48 H 1.08999 * 109.49686 * 61.40936 * 25 12 11 49 49 H 1.08999 * 113.62020 * 25.34540 * 26 2 1 50 50 H 1.08999 * 113.61099 * 156.24804 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 6 1.6794 2.3224 0.9215 5 6 2.2202 3.5945 0.9252 6 6 3.1930 3.9347 0.0039 7 6 3.6246 3.0029 -0.9214 8 6 3.0838 1.7308 -0.9252 9 6 2.1462 -0.9281 1.0602 10 6 2.0951 -2.0419 -0.0014 11 7 3.2793 -2.9111 -0.0040 12 6 2.9622 -4.2348 0.5483 13 6 3.0776 -4.1917 2.0738 14 6 2.7122 -5.5640 2.6484 15 7 3.5543 -6.5837 2.0084 16 6 4.2942 -7.4529 2.7650 17 1 5.2088 -7.8695 2.3695 18 6 3.8687 -7.7985 4.0403 19 7 2.6199 -7.5858 4.3976 20 14 5.0684 -8.5653 5.2494 21 1 5.6627 -7.5020 6.0988 22 1 4.3501 -9.5410 6.1080 23 1 6.1462 -9.2624 4.5027 24 6 3.5878 -6.6531 0.5411 25 6 3.9430 -5.2685 -0.0099 26 6 2.1460 -0.9280 -1.0603 27 1 -0.3633 0.3571 -0.9635 28 1 -0.3633 -1.0131 0.1726 29 1 -0.3633 0.6559 0.7911 30 1 0.9193 2.0567 1.6413 31 1 1.8830 4.3227 1.6481 32 1 3.6159 4.9285 0.0071 33 1 4.3844 3.2688 -1.6416 34 1 3.4207 1.0028 -1.6484 35 1 3.1586 -0.6477 1.3506 36 1 1.4941 -1.1080 1.9149 37 1 1.1595 -2.6013 -0.0007 38 1 4.0430 -2.4833 0.4980 39 1 1.9455 -4.5109 0.2687 40 1 4.1004 -3.9401 2.3543 41 1 2.3956 -3.4388 2.4690 42 1 1.6626 -5.7774 2.4462 43 1 2.8856 -5.5698 3.7245 44 1 2.3226 -7.8270 5.2888 45 1 2.6097 -6.9553 0.1672 46 1 4.3395 -7.3762 0.2245 47 1 3.8772 -5.2821 -1.0978 48 1 4.9576 -5.0064 0.2901 49 1 1.4940 -1.1079 -1.9150 50 1 3.1585 -0.6476 -1.3507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590956318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:13 Heat of formation + Delta-G solvation = 45.796225 kcal Electronic energy + Delta-G solvation = -26253.207178 eV Core-core repulsion = 22859.136567 eV Total energy + Delta-G solvation = -3394.070612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48771 -39.66472 -38.71542 -35.97882 -33.80717 -32.11994 -31.76148 -31.49833 -30.44049 -28.95229 -26.73884 -26.50040 -24.58267 -23.73193 -23.19897 -23.07167 -21.96038 -20.82792 -19.35708 -18.70818 -17.99837 -16.97216 -16.56062 -16.38255 -15.87049 -15.64823 -15.39568 -15.30514 -15.11746 -14.81212 -14.55957 -14.35913 -14.35320 -14.22345 -13.72042 -13.66736 -13.20530 -13.06708 -13.02101 -12.92747 -12.62986 -12.55664 -12.45538 -12.24246 -12.14025 -12.03509 -11.95465 -11.77547 -11.67535 -11.38968 -11.32690 -11.06310 -10.83574 -10.56996 -9.76769 -9.54280 -9.18092 -8.68404 -7.88411 -5.33773 0.51007 0.55329 1.45239 1.46497 1.55974 2.50219 2.91841 3.18361 3.28774 3.56911 3.65381 3.69759 3.87850 3.98602 3.99647 4.07341 4.19862 4.21625 4.25407 4.33012 4.43843 4.54124 4.56333 4.66521 4.70987 4.71598 4.76232 4.82997 4.86805 4.90276 4.95275 4.97332 5.02853 5.14561 5.17229 5.19819 5.22360 5.23999 5.27133 5.35823 5.39177 5.46615 5.50111 5.63571 5.67114 5.68270 5.71279 5.81197 6.18230 6.25397 6.38328 6.53697 7.13916 7.85744 8.37479 9.17673 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.002574 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.531756 B =10875.184122 C =11184.148367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.039 4.039 3 C -0.069 4.069 4 C -0.129 4.129 5 C -0.128 4.128 6 C -0.136 4.136 7 C -0.127 4.127 8 C -0.132 4.132 9 C -0.148 4.148 10 C 0.068 3.932 11 N -0.668 5.668 12 C 0.107 3.893 13 C -0.147 4.147 14 C 0.182 3.818 15 N -0.611 5.611 16 C -0.262 4.262 17 H 0.066 0.934 18 C -0.053 4.053 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.140 3.860 25 C -0.105 4.105 26 C -0.113 4.113 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.342 0.658 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.059 0.941 42 H -0.007 1.007 43 H 0.049 0.951 44 H 0.249 0.751 45 H 0.013 0.987 46 H 0.054 0.946 47 H 0.078 0.922 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 22.938 -11.295 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.040 4.040 3 C -0.070 4.070 4 C -0.147 4.147 5 C -0.146 4.146 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.150 4.150 9 C -0.188 4.188 10 C -0.042 4.042 11 N -0.296 5.296 12 C -0.003 4.003 13 C -0.188 4.188 14 C 0.055 3.945 15 N -0.334 5.334 16 C -0.392 4.392 17 H 0.084 0.916 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.192 1.192 24 C 0.014 3.986 25 C -0.144 4.144 26 C -0.151 4.151 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.161 0.839 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.011 0.989 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.031 0.969 46 H 0.072 0.928 47 H 0.096 0.904 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.003 22.668 -11.843 25.654 hybrid contribution 0.221 -0.520 2.076 2.152 sum -1.782 22.148 -9.767 24.272 Atomic orbital electron populations 1.21622 0.91807 1.02296 1.02546 1.20571 0.95795 0.90009 0.97607 1.19769 0.96584 0.94829 0.95770 1.21181 1.00712 0.93705 0.99147 1.21412 0.97208 0.96650 0.99356 1.21439 0.97777 1.00394 0.95771 1.21437 1.00186 0.93525 0.99360 1.21379 0.97110 0.97220 0.99267 1.23758 1.01008 0.96742 0.97252 1.23071 0.93416 0.91507 0.96223 1.60617 1.08010 1.02728 1.58281 1.21345 0.98373 0.89439 0.91102 1.22645 1.00416 0.97971 0.97734 1.20484 0.91024 0.86098 0.96868 1.44338 1.52828 1.35265 1.01010 1.19542 1.01460 1.20590 0.97593 0.91631 1.25805 0.96946 1.00659 1.01363 1.70197 1.15439 1.53064 1.19522 0.85260 0.78629 0.77651 0.78988 1.21339 1.22105 1.19176 1.21079 0.97859 0.96034 0.83602 1.21808 0.98520 0.94164 0.99919 1.23224 1.01637 0.93729 0.96498 0.91624 0.92058 0.91816 0.85767 0.84641 0.84430 0.84532 0.85022 0.90490 0.91859 0.89261 0.83874 0.91876 0.93305 0.92274 0.98851 0.93255 0.94152 0.96939 0.92751 0.90372 0.93025 0.90722 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.91 71.99 0.64 -1.43 16 2 C -0.04 -0.72 1.17 -52.40 -0.06 -0.78 16 3 C -0.07 -1.31 5.02 -19.86 -0.10 -1.41 16 4 C -0.13 -2.34 9.23 22.27 0.21 -2.14 16 5 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 6 C -0.14 -2.08 10.05 22.27 0.22 -1.86 16 7 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 8 C -0.13 -2.38 9.19 22.27 0.20 -2.17 16 9 C -0.15 -3.15 6.79 31.18 0.21 -2.94 16 10 C 0.07 1.54 3.63 45.50 0.17 1.70 16 11 N -0.67 -17.42 6.37 -466.34 -2.97 -20.39 16 12 C 0.11 3.47 2.42 44.94 0.11 3.58 16 13 C -0.15 -5.52 5.33 30.67 0.16 -5.36 16 14 C 0.18 8.93 5.31 86.36 0.46 9.39 16 15 N -0.61 -31.33 2.99 -699.09 -2.09 -33.42 16 16 C -0.26 -14.69 9.58 84.03 0.81 -13.89 16 17 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 18 C -0.05 -2.99 4.90 84.86 0.42 -2.57 16 19 N -0.94 -56.36 11.22 21.65 0.24 -56.12 16 20 Si 0.97 45.56 29.59 68.60 2.03 47.59 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.14 5.93 6.51 86.36 0.56 6.49 16 25 C -0.10 -3.58 5.69 30.67 0.17 -3.40 16 26 C -0.11 -2.13 6.46 31.12 0.20 -1.93 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.03 7.34 -2.39 -0.02 1.01 16 29 H 0.06 0.98 6.91 -2.39 -0.02 0.96 16 30 H 0.12 2.02 7.15 -2.91 -0.02 2.00 16 31 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.13 2.14 5.80 -2.91 -0.02 2.12 16 35 H 0.08 1.73 7.79 -2.39 -0.02 1.71 16 36 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.09 2.14 6.98 -2.38 -0.02 2.12 16 38 H 0.34 8.81 7.96 -89.69 -0.71 8.09 16 39 H 0.06 2.14 7.46 -2.38 -0.02 2.12 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 43 H 0.05 2.76 6.06 -2.39 -0.01 2.75 16 44 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.05 2.26 7.94 -2.39 -0.02 2.24 16 47 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 50 H 0.09 1.71 6.01 -2.39 -0.01 1.69 16 Total: -1.00 -63.41 382.59 2.24 -61.18 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.20 Total: 23.56 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.83 Total: -22.39 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -4.82 Total: -109.93 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -63.41 2.24 -61.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590956318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.972 kcal (2) G-P(sol) polarization free energy of solvation -63.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds