Wall clock time and date at job start Tue Mar 31 2020 10:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99977 * 2 1 4 4 C 1.53002 * 109.46774 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47193 * 304.99699 * 4 3 2 6 6 O 1.42909 * 109.47009 * 55.00009 * 5 4 3 7 7 C 1.42901 * 113.99838 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47036 * 64.99893 * 4 3 2 9 9 C 1.34782 * 119.99675 * 155.00134 * 8 4 3 10 10 O 1.21589 * 120.00280 * 4.97313 * 9 8 4 11 11 N 1.34781 * 119.99792 * 184.97534 * 9 8 4 12 12 C 1.46918 * 120.62801 * 174.76948 * 11 9 8 13 13 C 1.53193 * 108.89312 * 126.34282 * 12 11 9 14 14 C 1.53348 * 109.15088 * 54.57568 * 13 12 11 15 15 C 1.53001 * 109.42172 * 178.67453 * 14 13 12 16 16 C 1.50693 * 109.47212 * 295.12992 * 15 14 13 17 17 H 1.08004 * 119.99793 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00152 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00148 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00194 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47496 * 89.99446 * 20 18 16 22 22 H 1.48500 * 109.47625 * 210.00232 * 20 18 16 23 23 H 1.48508 * 109.46973 * 329.99972 * 20 18 16 24 24 C 1.53043 * 109.60761 * 298.71643 * 14 13 12 25 25 C 1.46922 * 120.62963 * 354.78907 * 11 9 8 26 26 H 1.08995 * 109.47621 * 300.00679 * 1 2 3 27 27 H 1.09010 * 109.46954 * 60.00152 * 1 2 3 28 28 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46936 * 59.99533 * 3 2 1 30 30 H 1.08999 * 109.46846 * 299.99266 * 3 2 1 31 31 H 1.09004 * 109.46848 * 184.99970 * 4 3 2 32 32 H 1.09001 * 109.47311 * 175.00068 * 5 4 3 33 33 H 1.09001 * 109.46806 * 295.00504 * 5 4 3 34 34 H 1.08998 * 109.46981 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47053 * 300.00156 * 7 6 5 36 36 H 1.09002 * 109.46869 * 60.00499 * 7 6 5 37 37 H 0.96993 * 120.00686 * 334.99671 * 8 4 3 38 38 H 1.08999 * 109.58659 * 246.20018 * 12 11 9 39 39 H 1.09008 * 109.59089 * 6.48440 * 12 11 9 40 40 H 1.09001 * 109.50216 * 174.65854 * 13 12 11 41 41 H 1.09003 * 109.49743 * 294.75139 * 13 12 11 42 42 H 1.09004 * 109.42096 * 58.75241 * 14 13 12 43 43 H 1.08998 * 109.46795 * 55.12719 * 15 14 13 44 44 H 1.08999 * 109.47130 * 175.12729 * 15 14 13 45 45 H 0.97002 * 120.00000 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.49252 * 301.42118 * 24 14 13 47 47 H 1.08999 * 109.52684 * 181.34161 * 24 14 13 48 48 H 1.09005 * 109.59094 * 353.37917 * 25 11 9 49 49 H 1.09000 * 109.58660 * 113.65528 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9780 0.3197 1.1827 6 8 3.3065 -0.9406 1.1285 7 6 3.6513 -1.8290 2.1934 8 7 3.9766 0.5639 -1.2508 9 6 5.2209 0.7938 -1.7151 10 8 6.0072 1.4418 -1.0517 11 7 5.5935 0.3054 -2.9147 12 6 6.9048 0.6422 -3.4855 13 6 7.6374 -0.6545 -3.8443 14 6 6.7462 -1.4980 -4.7640 15 6 7.4854 -2.7798 -5.1530 16 6 8.6972 -2.4303 -5.9777 17 1 8.9178 -1.3971 -6.2023 18 6 9.5242 -3.4293 -6.4455 19 7 10.5816 -3.1242 -7.1658 20 14 9.1423 -5.2162 -6.0577 21 1 8.2729 -5.7789 -7.1220 22 1 10.4080 -5.9900 -5.9917 23 1 8.4420 -5.3003 -4.7508 24 6 5.4502 -1.8582 -4.0339 25 6 4.6960 -0.5736 -3.6766 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.9785 2.1765 0.0902 32 1 5.0551 0.1600 1.1329 33 1 3.7283 0.8247 2.1158 34 1 3.1003 -2.7627 2.0803 35 1 4.7216 -2.0332 2.1641 36 1 3.3951 -1.3689 3.1478 37 1 3.3734 -0.0126 -1.7454 38 1 6.7685 1.2453 -4.3831 39 1 7.4888 1.2016 -2.7546 40 1 8.5703 -0.4159 -4.3551 41 1 7.8533 -1.2142 -2.9342 42 1 6.5103 -0.9279 -5.6626 43 1 7.7989 -3.3062 -4.2515 44 1 6.8219 -3.4194 -5.7350 45 1 11.1632 -3.8272 -7.4952 46 1 5.6868 -2.4068 -3.1222 47 1 4.8281 -2.4776 -4.6801 48 1 3.8235 -0.8186 -3.0710 49 1 4.3776 -0.0687 -4.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592014206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:26 Heat of formation + Delta-G solvation = -120.977331 kcal Electronic energy + Delta-G solvation = -27742.153551 eV Core-core repulsion = 23897.709081 eV Total energy + Delta-G solvation = -3844.444470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39708 -38.73233 -37.43689 -37.26646 -34.81977 -34.02280 -32.14826 -31.10985 -30.14447 -28.30765 -27.59474 -26.44606 -25.20365 -24.62427 -22.96182 -21.94621 -21.06546 -19.91236 -19.25874 -17.97323 -17.12268 -16.74402 -16.58683 -16.18930 -15.78928 -15.60144 -15.29280 -14.91286 -14.66305 -14.31587 -14.06926 -13.88723 -13.55043 -13.31931 -13.15741 -12.90333 -12.75287 -12.56508 -12.30632 -12.15269 -11.94038 -11.88853 -11.48804 -11.42454 -11.13305 -11.06188 -10.80531 -10.61681 -10.30801 -10.02706 -9.87308 -9.76535 -9.64067 -9.60400 -9.44089 -9.11322 -9.02504 -8.50616 -8.23256 -6.01474 -3.98573 2.73663 3.29735 3.32195 3.40111 3.44084 3.49919 3.79836 3.98033 4.47806 4.52556 4.75300 4.96811 5.04884 5.06618 5.12866 5.14978 5.19758 5.27003 5.30187 5.31602 5.32632 5.38139 5.43858 5.45952 5.59514 5.60368 5.65225 5.69995 5.82752 5.96588 6.10825 6.30279 6.37230 6.46560 6.49706 6.63133 6.88182 6.91392 6.93130 7.03318 7.14620 7.18781 7.28175 7.48503 7.83025 8.08140 8.57010 8.72473 9.03682 9.61731 11.11850 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002968 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.536313 B = 9430.435081 C = 9803.872658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.055 3.945 4 C 0.173 3.827 5 C 0.049 3.951 6 O -0.357 6.357 7 C 0.031 3.969 8 N -0.735 5.735 9 C 0.707 3.293 10 O -0.600 6.600 11 N -0.622 5.622 12 C 0.127 3.873 13 C -0.119 4.119 14 C -0.071 4.071 15 C -0.009 4.009 16 C -0.514 4.514 17 H 0.074 0.926 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.132 4.132 25 C 0.114 3.886 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.403 0.597 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.015 0.985 44 H 0.010 0.990 45 H 0.262 0.738 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.380 7.928 16.339 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.023 4.023 4 C 0.066 3.934 5 C -0.029 4.029 6 O -0.275 6.275 7 C -0.066 4.066 8 N -0.394 5.394 9 C 0.409 3.591 10 O -0.480 6.480 11 N -0.358 5.358 12 C 0.004 3.996 13 C -0.157 4.157 14 C -0.090 4.090 15 C -0.046 4.046 16 C -0.552 4.552 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.170 4.170 25 C -0.009 4.009 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.240 0.760 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.676 8.128 16.567 27.714 hybrid contribution -0.392 -1.147 0.137 1.220 sum -21.068 6.981 16.704 27.778 Atomic orbital electron populations 1.22724 0.81953 1.02622 0.99399 1.88179 1.18459 1.25758 1.95139 1.22755 0.92485 0.86259 1.00794 1.20961 0.92255 0.96876 0.83259 1.22922 0.97018 0.85845 0.97135 1.88106 1.66328 1.25187 1.47908 1.22684 0.99682 0.94138 0.90079 1.45172 1.14426 1.54037 1.25728 1.15858 0.82090 0.79923 0.81219 1.90875 1.51995 1.46813 1.58308 1.47335 1.19029 1.50988 1.18468 1.21647 0.82094 0.97957 0.97880 1.21964 0.99446 0.94608 0.99704 1.21044 0.92831 0.98408 0.96690 1.19615 0.95776 0.92943 0.96308 1.21145 1.07302 0.95311 1.31485 0.90814 1.25030 0.94890 0.98936 0.94710 1.69917 1.15067 1.33046 1.36375 0.86809 0.77678 0.85569 0.79379 1.20418 1.21527 1.19085 1.22048 0.98114 0.95845 1.01008 1.21658 0.92015 0.91534 0.95720 0.94531 0.94524 0.89736 0.92116 0.92720 0.87066 0.92493 0.93200 0.89984 0.94598 0.94791 0.75989 0.92001 0.89507 0.89314 0.92479 0.91788 0.96719 0.97128 0.92838 0.92002 0.91183 0.91240 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.36 -3.36 8.00 -58.58 -0.47 -3.83 16 3 C 0.05 0.44 5.68 37.16 0.21 0.65 16 4 C 0.17 1.77 2.82 -67.93 -0.19 1.58 16 5 C 0.05 0.54 5.74 37.16 0.21 0.75 16 6 O -0.36 -4.18 8.21 -58.58 -0.48 -4.66 16 7 C 0.03 0.30 11.01 101.05 1.11 1.41 16 8 N -0.74 -8.91 4.92 -58.67 -0.29 -9.20 16 9 C 0.71 10.91 8.26 -86.91 -0.72 10.19 16 10 O -0.60 -11.09 15.42 5.29 0.08 -11.01 16 11 N -0.62 -9.31 2.97 -178.50 -0.53 -9.84 16 12 C 0.13 2.04 6.43 -3.71 -0.02 2.02 16 13 C -0.12 -2.20 5.21 -26.45 -0.14 -2.34 16 14 C -0.07 -1.34 2.10 -90.42 -0.19 -1.53 16 15 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 16 C -0.51 -14.29 8.94 -34.45 -0.31 -14.60 16 17 H 0.07 2.18 7.30 -52.48 -0.38 1.80 16 18 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 20 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 24 C -0.13 -2.02 5.36 -26.61 -0.14 -2.16 16 25 C 0.11 1.47 6.39 -3.72 -0.02 1.44 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.21 8.14 -51.92 -0.42 -0.22 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 1.13 7.65 -51.93 -0.40 0.74 16 32 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.40 4.50 5.87 -40.82 -0.24 4.26 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.47 6.99 -51.92 -0.36 1.11 16 40 H 0.09 1.80 6.93 -51.93 -0.36 1.44 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 44 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.07 0.75 5.65 -51.93 -0.29 0.46 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -33.48 383.33 -7.82 -41.30 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.73 Total: 1.18 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 0.72 Total: 0.19 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.05 Total: -46.09 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.87 Total: -19.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.48 -7.82 -41.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592014206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.679 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds