Wall clock time and date at job start Tue Mar 31 2020 10:37:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42902 * 113.99977 * 2 1
4 4 C 1.53002 * 109.46774 * 179.97438 * 3 2 1
5 5 C 1.53004 * 109.47193 * 304.99699 * 4 3 2
6 6 O 1.42909 * 109.47009 * 55.00009 * 5 4 3
7 7 C 1.42901 * 113.99838 * 179.97438 * 6 5 4
8 8 N 1.46498 * 109.47036 * 64.99893 * 4 3 2
9 9 C 1.34782 * 119.99675 * 155.00134 * 8 4 3
10 10 O 1.21589 * 120.00280 * 4.97313 * 9 8 4
11 11 N 1.34781 * 119.99792 * 184.97534 * 9 8 4
12 12 C 1.46918 * 120.62801 * 174.76948 * 11 9 8
13 13 C 1.53193 * 108.89312 * 126.34282 * 12 11 9
14 14 C 1.53348 * 109.15088 * 54.57568 * 13 12 11
15 15 C 1.53001 * 109.42172 * 178.67453 * 14 13 12
16 16 C 1.50693 * 109.47212 * 295.12992 * 15 14 13
17 17 H 1.08004 * 119.99793 * 359.97438 * 16 15 14
18 18 C 1.37872 * 120.00152 * 179.97438 * 16 15 14
19 19 N 1.31519 * 120.00148 * 179.97438 * 18 16 15
20 20 Si 1.86797 * 120.00194 * 0.02562 * 18 16 15
21 21 H 1.48499 * 109.47496 * 89.99446 * 20 18 16
22 22 H 1.48500 * 109.47625 * 210.00232 * 20 18 16
23 23 H 1.48508 * 109.46973 * 329.99972 * 20 18 16
24 24 C 1.53043 * 109.60761 * 298.71643 * 14 13 12
25 25 C 1.46922 * 120.62963 * 354.78907 * 11 9 8
26 26 H 1.08995 * 109.47621 * 300.00679 * 1 2 3
27 27 H 1.09010 * 109.46954 * 60.00152 * 1 2 3
28 28 H 1.09001 * 109.47396 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.46936 * 59.99533 * 3 2 1
30 30 H 1.08999 * 109.46846 * 299.99266 * 3 2 1
31 31 H 1.09004 * 109.46848 * 184.99970 * 4 3 2
32 32 H 1.09001 * 109.47311 * 175.00068 * 5 4 3
33 33 H 1.09001 * 109.46806 * 295.00504 * 5 4 3
34 34 H 1.08998 * 109.46981 * 180.02562 * 7 6 5
35 35 H 1.09002 * 109.47053 * 300.00156 * 7 6 5
36 36 H 1.09002 * 109.46869 * 60.00499 * 7 6 5
37 37 H 0.96993 * 120.00686 * 334.99671 * 8 4 3
38 38 H 1.08999 * 109.58659 * 246.20018 * 12 11 9
39 39 H 1.09008 * 109.59089 * 6.48440 * 12 11 9
40 40 H 1.09001 * 109.50216 * 174.65854 * 13 12 11
41 41 H 1.09003 * 109.49743 * 294.75139 * 13 12 11
42 42 H 1.09004 * 109.42096 * 58.75241 * 14 13 12
43 43 H 1.08998 * 109.46795 * 55.12719 * 15 14 13
44 44 H 1.08999 * 109.47130 * 175.12729 * 15 14 13
45 45 H 0.97002 * 120.00000 * 180.02562 * 19 18 16
46 46 H 1.09004 * 109.49252 * 301.42118 * 24 14 13
47 47 H 1.08999 * 109.52684 * 181.34161 * 24 14 13
48 48 H 1.09005 * 109.59094 * 353.37917 * 25 11 9
49 49 H 1.09000 * 109.58660 * 113.65528 * 25 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1846 0.0006
5 6 3.9780 0.3197 1.1827
6 8 3.3065 -0.9406 1.1285
7 6 3.6513 -1.8290 2.1934
8 7 3.9766 0.5639 -1.2508
9 6 5.2209 0.7938 -1.7151
10 8 6.0072 1.4418 -1.0517
11 7 5.5935 0.3054 -2.9147
12 6 6.9048 0.6422 -3.4855
13 6 7.6374 -0.6545 -3.8443
14 6 6.7462 -1.4980 -4.7640
15 6 7.4854 -2.7798 -5.1530
16 6 8.6972 -2.4303 -5.9777
17 1 8.9178 -1.3971 -6.2023
18 6 9.5242 -3.4293 -6.4455
19 7 10.5816 -3.1242 -7.1658
20 14 9.1423 -5.2162 -6.0577
21 1 8.2729 -5.7789 -7.1220
22 1 10.4080 -5.9900 -5.9917
23 1 8.4420 -5.3003 -4.7508
24 6 5.4502 -1.8582 -4.0339
25 6 4.6960 -0.5736 -3.6766
26 1 -0.3634 0.5139 0.8899
27 1 -0.3633 0.5139 -0.8901
28 1 -0.3634 -1.0277 -0.0005
29 1 1.6885 1.8464 0.8899
30 1 1.6887 1.8463 -0.8901
31 1 3.9785 2.1765 0.0902
32 1 5.0551 0.1600 1.1329
33 1 3.7283 0.8247 2.1158
34 1 3.1003 -2.7627 2.0803
35 1 4.7216 -2.0332 2.1641
36 1 3.3951 -1.3689 3.1478
37 1 3.3734 -0.0126 -1.7454
38 1 6.7685 1.2453 -4.3831
39 1 7.4888 1.2016 -2.7546
40 1 8.5703 -0.4159 -4.3551
41 1 7.8533 -1.2142 -2.9342
42 1 6.5103 -0.9279 -5.6626
43 1 7.7989 -3.3062 -4.2515
44 1 6.8219 -3.4194 -5.7350
45 1 11.1632 -3.8272 -7.4952
46 1 5.6868 -2.4068 -3.1222
47 1 4.8281 -2.4776 -4.6801
48 1 3.8235 -0.8186 -3.0710
49 1 4.3776 -0.0687 -4.5886
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592014206.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:37:26
Heat of formation + Delta-G solvation = -120.977331 kcal
Electronic energy + Delta-G solvation = -27742.153551 eV
Core-core repulsion = 23897.709081 eV
Total energy + Delta-G solvation = -3844.444470 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 314.204 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.39708 -38.73233 -37.43689 -37.26646 -34.81977 -34.02280 -32.14826 -31.10985
-30.14447 -28.30765 -27.59474 -26.44606 -25.20365 -24.62427 -22.96182 -21.94621
-21.06546 -19.91236 -19.25874 -17.97323 -17.12268 -16.74402 -16.58683 -16.18930
-15.78928 -15.60144 -15.29280 -14.91286 -14.66305 -14.31587 -14.06926 -13.88723
-13.55043 -13.31931 -13.15741 -12.90333 -12.75287 -12.56508 -12.30632 -12.15269
-11.94038 -11.88853 -11.48804 -11.42454 -11.13305 -11.06188 -10.80531 -10.61681
-10.30801 -10.02706 -9.87308 -9.76535 -9.64067 -9.60400 -9.44089 -9.11322
-9.02504 -8.50616 -8.23256 -6.01474 -3.98573 2.73663 3.29735 3.32195
3.40111 3.44084 3.49919 3.79836 3.98033 4.47806 4.52556 4.75300
4.96811 5.04884 5.06618 5.12866 5.14978 5.19758 5.27003 5.30187
5.31602 5.32632 5.38139 5.43858 5.45952 5.59514 5.60368 5.65225
5.69995 5.82752 5.96588 6.10825 6.30279 6.37230 6.46560 6.49706
6.63133 6.88182 6.91392 6.93130 7.03318 7.14620 7.18781 7.28175
7.48503 7.83025 8.08140 8.57010 8.72473 9.03682 9.61731 11.11850
Molecular weight = 314.20amu
Principal moments of inertia in cm(-1)
A = 0.018920 B = 0.002968 C = 0.002855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.536313 B = 9430.435081 C = 9803.872658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.357 6.357
3 C 0.055 3.945
4 C 0.173 3.827
5 C 0.049 3.951
6 O -0.357 6.357
7 C 0.031 3.969
8 N -0.735 5.735
9 C 0.707 3.293
10 O -0.600 6.600
11 N -0.622 5.622
12 C 0.127 3.873
13 C -0.119 4.119
14 C -0.071 4.071
15 C -0.009 4.009
16 C -0.514 4.514
17 H 0.074 0.926
18 C 0.065 3.935
19 N -0.905 5.905
20 Si 0.878 3.122
21 H -0.278 1.278
22 H -0.289 1.289
23 H -0.266 1.266
24 C -0.132 4.132
25 C 0.114 3.886
26 H 0.036 0.964
27 H 0.036 0.964
28 H 0.084 0.916
29 H 0.061 0.939
30 H 0.055 0.945
31 H 0.112 0.888
32 H 0.057 0.943
33 H 0.050 0.950
34 H 0.082 0.918
35 H 0.035 0.965
36 H 0.033 0.967
37 H 0.403 0.597
38 H 0.062 0.938
39 H 0.087 0.913
40 H 0.088 0.912
41 H 0.056 0.944
42 H 0.064 0.936
43 H 0.015 0.985
44 H 0.010 0.990
45 H 0.262 0.738
46 H 0.061 0.939
47 H 0.070 0.930
48 H 0.069 0.931
49 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.380 7.928 16.339 28.052
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.275 6.275
3 C -0.023 4.023
4 C 0.066 3.934
5 C -0.029 4.029
6 O -0.275 6.275
7 C -0.066 4.066
8 N -0.394 5.394
9 C 0.409 3.591
10 O -0.480 6.480
11 N -0.358 5.358
12 C 0.004 3.996
13 C -0.157 4.157
14 C -0.090 4.090
15 C -0.046 4.046
16 C -0.552 4.552
17 H 0.092 0.908
18 C -0.136 4.136
19 N -0.544 5.544
20 Si 0.706 3.294
21 H -0.204 1.204
22 H -0.215 1.215
23 H -0.191 1.191
24 C -0.170 4.170
25 C -0.009 4.009
26 H 0.055 0.945
27 H 0.055 0.945
28 H 0.103 0.897
29 H 0.079 0.921
30 H 0.073 0.927
31 H 0.129 0.871
32 H 0.075 0.925
33 H 0.068 0.932
34 H 0.100 0.900
35 H 0.054 0.946
36 H 0.052 0.948
37 H 0.240 0.760
38 H 0.080 0.920
39 H 0.105 0.895
40 H 0.107 0.893
41 H 0.075 0.925
42 H 0.082 0.918
43 H 0.033 0.967
44 H 0.029 0.971
45 H 0.072 0.928
46 H 0.080 0.920
47 H 0.088 0.912
48 H 0.088 0.912
49 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -20.676 8.128 16.567 27.714
hybrid contribution -0.392 -1.147 0.137 1.220
sum -21.068 6.981 16.704 27.778
Atomic orbital electron populations
1.22724 0.81953 1.02622 0.99399 1.88179 1.18459 1.25758 1.95139
1.22755 0.92485 0.86259 1.00794 1.20961 0.92255 0.96876 0.83259
1.22922 0.97018 0.85845 0.97135 1.88106 1.66328 1.25187 1.47908
1.22684 0.99682 0.94138 0.90079 1.45172 1.14426 1.54037 1.25728
1.15858 0.82090 0.79923 0.81219 1.90875 1.51995 1.46813 1.58308
1.47335 1.19029 1.50988 1.18468 1.21647 0.82094 0.97957 0.97880
1.21964 0.99446 0.94608 0.99704 1.21044 0.92831 0.98408 0.96690
1.19615 0.95776 0.92943 0.96308 1.21145 1.07302 0.95311 1.31485
0.90814 1.25030 0.94890 0.98936 0.94710 1.69917 1.15067 1.33046
1.36375 0.86809 0.77678 0.85569 0.79379 1.20418 1.21527 1.19085
1.22048 0.98114 0.95845 1.01008 1.21658 0.92015 0.91534 0.95720
0.94531 0.94524 0.89736 0.92116 0.92720 0.87066 0.92493 0.93200
0.89984 0.94598 0.94791 0.75989 0.92001 0.89507 0.89314 0.92479
0.91788 0.96719 0.97128 0.92838 0.92002 0.91183 0.91240 0.91525
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.20 11.01 101.05 1.11 1.31 16
2 O -0.36 -3.36 8.00 -58.58 -0.47 -3.83 16
3 C 0.05 0.44 5.68 37.16 0.21 0.65 16
4 C 0.17 1.77 2.82 -67.93 -0.19 1.58 16
5 C 0.05 0.54 5.74 37.16 0.21 0.75 16
6 O -0.36 -4.18 8.21 -58.58 -0.48 -4.66 16
7 C 0.03 0.30 11.01 101.05 1.11 1.41 16
8 N -0.74 -8.91 4.92 -58.67 -0.29 -9.20 16
9 C 0.71 10.91 8.26 -86.91 -0.72 10.19 16
10 O -0.60 -11.09 15.42 5.29 0.08 -11.01 16
11 N -0.62 -9.31 2.97 -178.50 -0.53 -9.84 16
12 C 0.13 2.04 6.43 -3.71 -0.02 2.02 16
13 C -0.12 -2.20 5.21 -26.45 -0.14 -2.34 16
14 C -0.07 -1.34 2.10 -90.42 -0.19 -1.53 16
15 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16
16 C -0.51 -14.29 8.94 -34.45 -0.31 -14.60 16
17 H 0.07 2.18 7.30 -52.48 -0.38 1.80 16
18 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16
19 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16
20 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16
21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
23 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16
24 C -0.13 -2.02 5.36 -26.61 -0.14 -2.16 16
25 C 0.11 1.47 6.39 -3.72 -0.02 1.44 16
26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16
27 H 0.04 0.21 8.14 -51.92 -0.42 -0.22 16
28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.11 1.13 7.65 -51.93 -0.40 0.74 16
32 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16
33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16
37 H 0.40 4.50 5.87 -40.82 -0.24 4.26 16
38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
39 H 0.09 1.47 6.99 -51.92 -0.36 1.11 16
40 H 0.09 1.80 6.93 -51.93 -0.36 1.44 16
41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
43 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16
44 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16
45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
48 H 0.07 0.75 5.65 -51.93 -0.29 0.46 16
49 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
LS Contribution 383.33 15.07 5.78 5.78
Total: -1.00 -33.48 383.33 -7.82 -41.30
By element:
Atomic # 1 Polarization: 9.92 SS G_CDS: -8.73 Total: 1.18 kcal
Atomic # 6 Polarization: -0.53 SS G_CDS: 0.72 Total: 0.19 kcal
Atomic # 7 Polarization: -46.05 SS G_CDS: -0.05 Total: -46.09 kcal
Atomic # 8 Polarization: -18.63 SS G_CDS: -0.87 Total: -19.50 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -33.48 -7.82 -41.30 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592014206.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.679 kcal
(2) G-P(sol) polarization free energy of solvation -33.479 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.158 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.977 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds