Wall clock time and date at job start Tue Mar 31 2020 10:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99977 * 2 1 4 4 C 1.53002 * 109.46774 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47193 * 304.99699 * 4 3 2 6 6 O 1.42909 * 109.47009 * 55.00009 * 5 4 3 7 7 C 1.42901 * 113.99838 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47036 * 64.99893 * 4 3 2 9 9 C 1.34782 * 119.99675 * 155.00134 * 8 4 3 10 10 O 1.21589 * 120.00280 * 4.97313 * 9 8 4 11 11 N 1.34781 * 119.99792 * 184.97534 * 9 8 4 12 12 C 1.46918 * 120.62801 * 174.76948 * 11 9 8 13 13 C 1.53193 * 108.89312 * 126.34282 * 12 11 9 14 14 C 1.53348 * 109.15088 * 54.57568 * 13 12 11 15 15 C 1.53001 * 109.42172 * 178.67453 * 14 13 12 16 16 C 1.50693 * 109.47212 * 295.12992 * 15 14 13 17 17 H 1.08004 * 119.99793 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00152 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00148 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00194 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47496 * 89.99446 * 20 18 16 22 22 H 1.48500 * 109.47625 * 210.00232 * 20 18 16 23 23 H 1.48508 * 109.46973 * 329.99972 * 20 18 16 24 24 C 1.53043 * 109.60761 * 298.71643 * 14 13 12 25 25 C 1.46922 * 120.62963 * 354.78907 * 11 9 8 26 26 H 1.08995 * 109.47621 * 300.00679 * 1 2 3 27 27 H 1.09010 * 109.46954 * 60.00152 * 1 2 3 28 28 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46936 * 59.99533 * 3 2 1 30 30 H 1.08999 * 109.46846 * 299.99266 * 3 2 1 31 31 H 1.09004 * 109.46848 * 184.99970 * 4 3 2 32 32 H 1.09001 * 109.47311 * 175.00068 * 5 4 3 33 33 H 1.09001 * 109.46806 * 295.00504 * 5 4 3 34 34 H 1.08998 * 109.46981 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47053 * 300.00156 * 7 6 5 36 36 H 1.09002 * 109.46869 * 60.00499 * 7 6 5 37 37 H 0.96993 * 120.00686 * 334.99671 * 8 4 3 38 38 H 1.08999 * 109.58659 * 246.20018 * 12 11 9 39 39 H 1.09008 * 109.59089 * 6.48440 * 12 11 9 40 40 H 1.09001 * 109.50216 * 174.65854 * 13 12 11 41 41 H 1.09003 * 109.49743 * 294.75139 * 13 12 11 42 42 H 1.09004 * 109.42096 * 58.75241 * 14 13 12 43 43 H 1.08998 * 109.46795 * 55.12719 * 15 14 13 44 44 H 1.08999 * 109.47130 * 175.12729 * 15 14 13 45 45 H 0.97002 * 120.00000 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.49252 * 301.42118 * 24 14 13 47 47 H 1.08999 * 109.52684 * 181.34161 * 24 14 13 48 48 H 1.09005 * 109.59094 * 353.37917 * 25 11 9 49 49 H 1.09000 * 109.58660 * 113.65528 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9780 0.3197 1.1827 6 8 3.3065 -0.9406 1.1285 7 6 3.6513 -1.8290 2.1934 8 7 3.9766 0.5639 -1.2508 9 6 5.2209 0.7938 -1.7151 10 8 6.0072 1.4418 -1.0517 11 7 5.5935 0.3054 -2.9147 12 6 6.9048 0.6422 -3.4855 13 6 7.6374 -0.6545 -3.8443 14 6 6.7462 -1.4980 -4.7640 15 6 7.4854 -2.7798 -5.1530 16 6 8.6972 -2.4303 -5.9777 17 1 8.9178 -1.3971 -6.2023 18 6 9.5242 -3.4293 -6.4455 19 7 10.5816 -3.1242 -7.1658 20 14 9.1423 -5.2162 -6.0577 21 1 8.2729 -5.7789 -7.1220 22 1 10.4080 -5.9900 -5.9917 23 1 8.4420 -5.3003 -4.7508 24 6 5.4502 -1.8582 -4.0339 25 6 4.6960 -0.5736 -3.6766 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 3.9785 2.1765 0.0902 32 1 5.0551 0.1600 1.1329 33 1 3.7283 0.8247 2.1158 34 1 3.1003 -2.7627 2.0803 35 1 4.7216 -2.0332 2.1641 36 1 3.3951 -1.3689 3.1478 37 1 3.3734 -0.0126 -1.7454 38 1 6.7685 1.2453 -4.3831 39 1 7.4888 1.2016 -2.7546 40 1 8.5703 -0.4159 -4.3551 41 1 7.8533 -1.2142 -2.9342 42 1 6.5103 -0.9279 -5.6626 43 1 7.7989 -3.3062 -4.2515 44 1 6.8219 -3.4194 -5.7350 45 1 11.1632 -3.8272 -7.4952 46 1 5.6868 -2.4068 -3.1222 47 1 4.8281 -2.4776 -4.6801 48 1 3.8235 -0.8186 -3.0710 49 1 4.3776 -0.0687 -4.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592014206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:25 Heat of formation + Delta-G solvation = -143.240590 kcal Electronic energy + Delta-G solvation = -27743.118958 eV Core-core repulsion = 23897.709081 eV Total energy + Delta-G solvation = -3845.409877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53744 -39.62762 -38.59698 -38.06516 -35.81340 -35.65613 -34.06302 -32.27953 -31.31304 -29.96055 -28.24039 -27.10000 -26.22325 -25.88238 -24.25475 -23.41664 -22.18786 -21.21259 -20.55583 -19.24689 -18.71748 -17.94788 -17.42932 -16.97389 -16.65059 -16.58898 -16.34944 -16.17900 -15.70935 -15.55663 -15.34238 -15.08930 -14.99627 -14.53325 -14.45228 -14.28427 -14.10354 -13.59007 -13.47012 -13.21336 -13.10803 -12.91546 -12.77949 -12.56211 -12.38160 -12.15603 -12.06721 -12.00276 -11.82793 -11.70207 -11.39927 -11.24003 -11.09460 -10.87233 -10.70355 -10.51825 -10.36513 -10.18315 -9.42929 -8.24844 -6.26560 1.35531 1.38168 1.49302 1.65484 2.13437 2.38399 2.79385 3.02078 3.05769 3.10718 3.80865 3.91209 3.99673 4.04751 4.09386 4.22860 4.37830 4.41952 4.43420 4.46277 4.51816 4.57779 4.59406 4.64102 4.67246 4.68500 4.73363 4.81277 4.83066 4.87888 4.90003 4.97099 5.01780 5.08277 5.20331 5.25391 5.32863 5.43984 5.54015 5.62269 5.73549 5.75988 6.02088 6.31537 6.35445 6.43035 6.81280 6.99873 7.37197 7.56725 8.91720 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002968 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.536313 B = 9430.435081 C = 9803.872658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.381 6.381 3 C 0.061 3.939 4 C 0.167 3.833 5 C 0.052 3.948 6 O -0.370 6.370 7 C 0.028 3.972 8 N -0.721 5.721 9 C 0.703 3.297 10 O -0.636 6.636 11 N -0.624 5.624 12 C 0.137 3.863 13 C -0.112 4.112 14 C -0.068 4.068 15 C -0.007 4.007 16 C -0.517 4.517 17 H 0.039 0.961 18 C 0.001 3.999 19 N -0.954 5.954 20 Si 0.946 3.054 21 H -0.265 1.265 22 H -0.289 1.289 23 H -0.251 1.251 24 C -0.124 4.124 25 C 0.118 3.882 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.409 0.591 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.009 0.991 44 H 0.020 0.980 45 H 0.263 0.737 46 H 0.052 0.948 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.838 7.311 17.368 31.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.299 6.299 3 C -0.016 4.016 4 C 0.061 3.939 5 C -0.027 4.027 6 O -0.289 6.289 7 C -0.069 4.069 8 N -0.379 5.379 9 C 0.405 3.595 10 O -0.518 6.518 11 N -0.361 5.361 12 C 0.014 3.986 13 C -0.150 4.150 14 C -0.086 4.086 15 C -0.044 4.044 16 C -0.555 4.555 17 H 0.057 0.943 18 C -0.195 4.195 19 N -0.595 5.595 20 Si 0.770 3.230 21 H -0.190 1.190 22 H -0.215 1.215 23 H -0.175 1.175 24 C -0.163 4.163 25 C -0.004 4.004 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.027 0.973 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.109 0.891 48 H 0.115 0.885 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.196 7.504 17.606 30.850 hybrid contribution 0.708 -0.898 -0.163 1.155 sum -23.488 6.606 17.443 29.993 Atomic orbital electron populations 1.22829 0.80597 1.03121 1.00357 1.88136 1.19968 1.26457 1.95375 1.22724 0.90360 0.86178 1.02347 1.21162 0.94186 0.96438 0.82073 1.22888 0.95175 0.86098 0.98491 1.88080 1.66324 1.25572 1.48889 1.22794 0.99278 0.94451 0.90382 1.45113 1.13133 1.53544 1.26133 1.16021 0.82750 0.79709 0.81011 1.90851 1.53257 1.48447 1.59274 1.47340 1.18699 1.51364 1.18658 1.21395 0.82707 0.96345 0.98137 1.21814 0.98717 0.95875 0.98627 1.20962 0.94295 0.96225 0.97154 1.19581 0.94450 0.95223 0.95163 1.21491 1.08844 0.93802 1.31350 0.94316 1.25977 0.94738 1.04050 0.94735 1.70074 1.16575 1.34633 1.38241 0.85723 0.77727 0.79502 0.80057 1.18980 1.21507 1.17512 1.21960 0.96467 0.97414 1.00413 1.21783 0.91852 0.89969 0.96845 0.93563 0.93543 0.89549 0.90124 0.91527 0.87183 0.95557 0.91084 0.88981 0.95554 0.93215 0.75204 0.90640 0.90678 0.92274 0.93893 0.91910 0.97306 0.96133 0.92775 0.92870 0.89135 0.88524 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.38 -6.06 8.00 -126.65 -1.01 -7.07 16 3 C 0.06 0.79 5.68 71.98 0.41 1.20 16 4 C 0.17 3.12 2.82 44.99 0.13 3.25 16 5 C 0.05 1.07 5.74 71.98 0.41 1.48 16 6 O -0.37 -8.02 8.21 -126.65 -1.04 -9.06 16 7 C 0.03 0.48 11.01 113.37 1.25 1.73 16 8 N -0.72 -16.08 4.92 -457.79 -2.25 -18.33 16 9 C 0.70 20.93 8.26 179.05 1.48 22.41 16 10 O -0.64 -23.54 15.42 -4.00 -0.06 -23.60 16 11 N -0.62 -17.79 2.97 -836.91 -2.49 -20.28 16 12 C 0.14 4.42 6.43 86.36 0.56 4.98 16 13 C -0.11 -4.23 5.21 30.78 0.16 -4.07 16 14 C -0.07 -2.51 2.10 -10.66 -0.02 -2.53 16 15 C -0.01 -0.31 3.52 29.85 0.10 -0.21 16 16 C -0.52 -29.39 8.94 25.60 0.23 -29.16 16 17 H 0.04 2.41 7.30 -2.91 -0.02 2.38 16 18 C 0.00 0.06 5.47 84.65 0.46 0.52 16 19 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 20 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 24 C -0.12 -3.49 5.36 30.67 0.16 -3.33 16 25 C 0.12 2.66 6.39 86.36 0.55 3.22 16 26 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 2.10 7.65 -2.38 -0.02 2.08 16 32 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.41 7.94 5.87 -92.71 -0.54 7.40 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 2.61 6.99 -2.38 -0.02 2.59 16 40 H 0.06 2.55 6.93 -2.39 -0.02 2.54 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 44 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 45 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.10 1.71 5.65 -2.38 -0.01 1.69 16 49 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -74.35 383.33 2.78 -71.57 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.32 Total: 19.06 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 7.13 Total: 1.02 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -4.44 Total: -98.67 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -2.11 Total: -39.74 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -74.35 2.78 -71.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592014206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.670 kcal (2) G-P(sol) polarization free energy of solvation -74.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds